Revision c385a1b7
Added by Andreas Müller almost 6 years ago
| app-import/src/main/java/eu/etaxonomy/cdm/io/redlist/germanSL/GermanSLTaxonImport.java | ||
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import eu.etaxonomy.cdm.common.CdmUtils; |
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import eu.etaxonomy.cdm.io.common.mapping.UndefinedTransformerMethodException; |
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import eu.etaxonomy.cdm.io.mexico.SimpleExcelTaxonImport; |
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import eu.etaxonomy.cdm.io.mexico.SimpleExcelTaxonImportState; |
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import eu.etaxonomy.cdm.model.common.CdmBase; |
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import eu.etaxonomy.cdm.model.common.DefinedTerm; |
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* |
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*/ |
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@Component |
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public class GermanSLTaxonImport<CONFIG extends GermanSLImportConfigurator>
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extends SimpleExcelTaxonImport<CONFIG> {
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public class GermanSLTaxonImport |
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extends GermanSLImporBase {
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private static final long serialVersionUID = 236093186271666895L; |
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@Override |
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protected void firstPass(SimpleExcelTaxonImportState<CONFIG> state) {
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protected void firstPass(SimpleExcelTaxonImportState<GermanSLImportConfigurator> state) {
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String line = state.getCurrentLine() + ": "; |
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HashMap<String, String> record = state.getOriginalRecord(); |
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|
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//status |
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String statusStr = getValue(record, SYNONYM); |
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TaxonBase<?> taxonBase; |
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if (isAccepted(statusStr)){
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if (isAccepted(statusStr, nameResult)){
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taxonBase = Taxon.NewInstance(taxonName, sec); |
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if (nameResult.proParte){
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logger.warn(line + "accepted taxon can not be pro parte");
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} |
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// if (nameResult.proParte){
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// logger.warn(line + "accepted taxon can not be pro parte in GermanSL");
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// }
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}else{
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Synonym syn = Synonym.NewInstance(taxonName, sec); |
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if (nameResult.proParte){
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syn.setProParte(true); |
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} |
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// if (nameResult.proParte){
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// syn.setProParte(true);
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// }
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taxonBase = syn; |
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} |
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if (!isBlank(nameResult.sensu)){
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* @param secRefStr |
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* @return |
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*/ |
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private Reference getSecRef(SimpleExcelTaxonImportState<CONFIG> state, String secRefStr, String line) {
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private Reference getSecRef(SimpleExcelTaxonImportState<GermanSLImportConfigurator> state, String secRefStr, String line) {
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Reference result = state.getReference(secRefStr); |
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if (result == null && secRefStr != null){
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result = ReferenceFactory.newGeneric(); |
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} |
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private class NameResult{
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IBotanicalName name; |
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boolean proParte = false; |
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String sensu = null; |
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String auct = null; |
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} |
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/** |
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* @param record |
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* @param state |
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* @return |
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*/ |
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private NameResult makeName(String line, HashMap<String, String> record, SimpleExcelTaxonImportState<CONFIG> state) {
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public NameResult makeName(String line, HashMap<String, String> record, SimpleExcelTaxonImportState<GermanSLImportConfigurator> state) {
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String specieNrStr = getValue(record, SPECIES_NR); |
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String nameStr = getValue(record, ABBREVIAT); |
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* @param rankStr |
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* @return |
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*/ |
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private Rank makeRank(String line, SimpleExcelTaxonImportState<CONFIG> state, String rankStr) {
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private Rank makeRank(String line, SimpleExcelTaxonImportState<GermanSLImportConfigurator> state, String rankStr) {
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Rank rank = null; |
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try {
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rank = state.getTransformer().getRankByKey(rankStr); |
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* @param fullName |
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* @return |
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*/ |
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private IBotanicalName getExistingName(SimpleExcelTaxonImportState<CONFIG> state, IBotanicalName fullName) {
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private IBotanicalName getExistingName(SimpleExcelTaxonImportState<GermanSLImportConfigurator> state, IBotanicalName fullName) {
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initExistinNames(state); |
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return (IBotanicalName)state.getName(fullName.getTitleCache()); |
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} |
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* @param state |
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*/ |
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@SuppressWarnings("rawtypes")
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private void initExistinNames(SimpleExcelTaxonImportState<CONFIG> state) {
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private void initExistinNames(SimpleExcelTaxonImportState<GermanSLImportConfigurator> state) {
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if (!nameMapIsInitialized){
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List<String> propertyPaths = Arrays.asList("");
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List<TaxonName> existingNames = this.getNameService().list(null, null, null, null, propertyPaths); |
| ... | ... | |
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} |
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private boolean isAccepted(String statusStr){
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if ("FALSE()".equals(statusStr) || "0".equals(statusStr) || "false".equalsIgnoreCase(statusStr)){
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return true; |
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} else if ("TRUE()".equals(statusStr) || "1".equals(statusStr)|| "true".equalsIgnoreCase(statusStr)){
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return false; |
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}else{
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logger.warn("Unhandled taxon status: " + statusStr);
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return false; |
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} |
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} |
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/** |
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* @param next |
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* @return |
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@Override |
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protected boolean isIgnore(SimpleExcelTaxonImportState<CONFIG> state) {
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protected boolean isIgnore(SimpleExcelTaxonImportState<GermanSLImportConfigurator> state) {
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return ! state.getConfig().isDoTaxa(); |
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} |
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} |
Also available in: Unified diff
latest changes to BgbmInstancesUpdater, E+M Import, GermanSL Import, etct