EDIT

/**

* Copyright (C) 2007 EDIT

* European Distributed Institute of Taxonomy

* http://www.e-taxonomy.eu

*

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.app.pesi;

import java.util.UUID;

import org.apache.log4j.Logger;

import eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration;

import eu.etaxonomy.cdm.app.common.CdmDestinations;

import eu.etaxonomy.cdm.database.DbSchemaValidation;

import eu.etaxonomy.cdm.database.ICdmDataSource;

import eu.etaxonomy.cdm.io.common.CdmDefaultImport;

import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;

import eu.etaxonomy.cdm.io.common.IImportConfigurator.DO_REFERENCES;

import eu.etaxonomy.cdm.io.common.Source;

import eu.etaxonomy.cdm.io.pesi.faunaEuropaea.FaunaEuropaeaImportConfigurator;

import eu.etaxonomy.cdm.io.pesi.out.PesiTransformer;

import eu.etaxonomy.cdm.model.description.Feature;

import eu.etaxonomy.cdm.model.description.FeatureNode;

import eu.etaxonomy.cdm.model.description.FeatureTree;

import eu.etaxonomy.cdm.model.name.NomenclaturalCode;

/**

 * @author a.babadshanjan

 * @created 12.05.2009

 */

public class FaunaEuropaeaActivator {

	@SuppressWarnings("unused")

	private static final Logger logger = Logger.getLogger(FaunaEuropaeaActivator.class);

	static final Source faunaEuropaeaSource = PesiSources.mfn_faunEu_pesi3();

	static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_faunaEu_mysql();

	//static final ICdmDataSource cdmDestination = CdmDestinations.cdm_pesi_fauna_europaea();

	static final int limitSave = 5000;

//	static final CHECK check = CHECK.CHECK_AND_IMPORT;

	static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK;

	static DbSchemaValidation dbSchemaValidation = DbSchemaValidation.CREATE;

//	static DbSchemaValidation dbSchemaValidation = DbSchemaValidation.UPDATE;

//	static DbSchemaValidation dbSchemaValidation = DbSchemaValidation.VALIDATE;

	static final NomenclaturalCode nomenclaturalCode  = NomenclaturalCode.ICZN;

// ****************** ALL *****************************************

	// Fauna Europaea to CDM import

	static final boolean doAuthors = true;

	static final boolean doTaxa =true;

	static final boolean doBasionyms = true;

	static final boolean doTaxonomicallyIncluded = true;

	static final boolean doMisappliedNames = true;

	static final boolean doHeterotypicSynonyms = true;

	static final DO_REFERENCES doReferences =  DO_REFERENCES.ALL;

	static final boolean doDistributions = true;

	static final boolean makeFeatureTree = true;

	static final boolean doVernacularNames = true;

	static final boolean doAssociatedSpecialists = true;

	static final boolean addCommonNameFeature = true;

	static final boolean doInferredSynonyms = true;

    // CDM to CDM import

	static final boolean doHeterotypicSynonymsForBasionyms = true;

// ************************ NONE **************************************** //

	// Fauna Europaea to CDM import

//	static final boolean doAuthors = false;

//	static final boolean doTaxa = false;

//	static final boolean doBasionyms = false;

//	static final boolean doTaxonomicallyIncluded = false;

//	static final boolean doMisappliedNames = false;

//	static final boolean doHeterotypicSynonyms = false;

//	static final DO_REFERENCES doReferences =  DO_REFERENCES.NONE;

//	static final boolean doDistributions = false;

//	static final boolean makeFeatureTree = false;

//    // CDM to CDM import

//	static final boolean doHeterotypicSynonymsForBasionyms = false;

	/**

	 * @param args

	 */

	public static void main(String[] args) {

		ICdmDataSource destination = cdmDestination;

		System.out.println("Starting import from Fauna Europaea (" + faunaEuropaeaSource.getDatabase() + ") to CDM (" + destination.getDatabase() + ")...");

				// invoke Fauna Europaea to CDM import

		FaunaEuropaeaImportConfigurator fauEuImportConfigurator =

			FaunaEuropaeaImportConfigurator.NewInstance(faunaEuropaeaSource,  destination);

		fauEuImportConfigurator.setDbSchemaValidation(dbSchemaValidation);

		fauEuImportConfigurator.setNomenclaturalCode(nomenclaturalCode);

		fauEuImportConfigurator.setCheck(check);

		fauEuImportConfigurator.setDoAuthors(doAuthors);

		fauEuImportConfigurator.setDoTaxa(doTaxa);

		fauEuImportConfigurator.setDoReferences(doReferences);

		fauEuImportConfigurator.setDoOccurrence(doDistributions);

		fauEuImportConfigurator.setDoTaxonomicallyIncluded(doTaxonomicallyIncluded);

		fauEuImportConfigurator.setDoBasionyms(doBasionyms);

		fauEuImportConfigurator.setDoMisappliedNames(doMisappliedNames);

		fauEuImportConfigurator.setDoHeterotypicSynonyms(doHeterotypicSynonyms);

		fauEuImportConfigurator.setDoHeterotypicSynonymsForBasionyms(doHeterotypicSynonymsForBasionyms);

		fauEuImportConfigurator.setSourceRefUuid(PesiTransformer.uuidSourceRefFaunaEuropaea);

		fauEuImportConfigurator.setDoAssociatedSpecialists(doAssociatedSpecialists);

		fauEuImportConfigurator.setDoVernacularNames(doVernacularNames);

		fauEuImportConfigurator.setDoInferredSynonyms(doInferredSynonyms);

		CdmDefaultImport<FaunaEuropaeaImportConfigurator> fauEuImport =

			new CdmDefaultImport<FaunaEuropaeaImportConfigurator>();

		try {

			fauEuImport.invoke(fauEuImportConfigurator);

		} catch (Exception e) {

			System.out.println("ERROR in Fauna Europaea to CDM import");

			e.printStackTrace();

		}

		// invoke CDM to CDM import

//		System.out.println("Starting import from CDM to CDM (" + destination.getDatabase() + ")...");

//

//		CdmImportConfigurator cdmImportConfigurator =

//			CdmImportConfigurator.NewInstance(destination, destination);

//

//		cdmImportConfigurator.setDbSchemaValidation(DbSchemaValidation.VALIDATE);

//		cdmImportConfigurator.setNomenclaturalCode(nomenclaturalCode);

//		cdmImportConfigurator.setCheck(check);

//

//		cdmImportConfigurator.setDoHeterotypicSynonymsForBasionyms(doHeterotypicSynonymsForBasionyms);

//		cdmImportConfigurator.setDoAuthors(false);

//		cdmImportConfigurator.setDoTaxa(false);

//		cdmImportConfigurator.setDoReferences(DO_REFERENCES.NONE);

//		cdmImportConfigurator.setDoOccurrence(false);

//		cdmImportConfigurator.setLimitSave(limitSave);

//

//		CdmDefaultImport<CdmImportConfigurator> cdmImport =

//			new CdmDefaultImport<CdmImportConfigurator>();

//		try {

//			cdmImport.invoke(cdmImportConfigurator);

//		} catch (Exception e) {

//			System.out.println("ERROR in CDM to CDM import");

//			e.printStackTrace();

//		}

		//make feature tree

		if (makeFeatureTree) {

			FeatureTree featureTree = FeatureTree.NewInstance(UUID.fromString("ff59b9ad-1fb8-4aa4-a8ba-79d62123d0fb"));

			FeatureNode root = featureTree.getRoot();

			ICdmApplicationConfiguration app = fauEuImport.getCdmAppController();

			Feature citationFeature = (Feature)app.getTermService().find(UUID.fromString("99b2842f-9aa7-42fa-bd5f-7285311e0101"));

			FeatureNode citationNode = FeatureNode.NewInstance(citationFeature);

			root.addChild(citationNode);

			Feature distributionFeature = (Feature)app.getTermService().find(UUID.fromString("9fc9d10c-ba50-49ee-b174-ce83fc3f80c6"));

			FeatureNode distributionNode = FeatureNode.NewInstance(distributionFeature);

			root.addChild(distributionNode);

			Feature commonNameFeature = (Feature)app.getTermService().find(UUID.fromString("fc810911-51f0-4a46-ab97-6562fe263ae5"));

			FeatureNode commonNameFeatureNode = FeatureNode.NewInstance(commonNameFeature);

			root.addChild(commonNameFeatureNode);

			app.getFeatureTreeService().saveOrUpdate(featureTree);

		}

		System.out.println("End importing Fauna Europaea data");

	}

}