Revision c2877394
Added by Andreas Müller almost 7 years ago
| app-import/src/main/java/eu/etaxonomy/cdm/app/caryophyllales/TaxonExcelCaryophyllales.java | ||
|---|---|---|
| 1 | 1 |
package eu.etaxonomy.cdm.app.caryophyllales; |
| 2 | 2 |
|
| 3 | 3 |
import eu.etaxonomy.cdm.io.excel.taxa.NormalExplicitRow; |
| 4 |
import eu.etaxonomy.cdm.io.excel.taxa.TaxonExcelImportBase; |
|
| 4 | 5 |
import eu.etaxonomy.cdm.io.excel.taxa.TaxonExcelImportState; |
| 5 |
import eu.etaxonomy.cdm.io.excel.taxa.TaxonExcelImporterBase; |
|
| 6 | 6 |
|
| 7 |
public class TaxonExcelCaryophyllales extends TaxonExcelImporterBase {
|
|
| 7 |
public class TaxonExcelCaryophyllales extends TaxonExcelImportBase {
|
|
| 8 | 8 |
private static final long serialVersionUID = 7516628978483172010L; |
| 9 | 9 |
protected static final String AUTHOR_COLUMN = "Authorship"; |
| 10 | 10 |
protected static final String SPECIES_HYBRID_MARKER = "Species hybrid marker"; |
| app-import/src/main/java/eu/etaxonomy/cdm/io/cuba/CubaExcelImport.java | ||
|---|---|---|
| 25 | 25 |
|
| 26 | 26 |
import eu.etaxonomy.cdm.common.CdmUtils; |
| 27 | 27 |
import eu.etaxonomy.cdm.io.common.mapping.UndefinedTransformerMethodException; |
| 28 |
import eu.etaxonomy.cdm.io.excel.common.ExcelImporterBase; |
|
| 28 |
import eu.etaxonomy.cdm.io.excel.common.ExcelImportBase; |
|
| 29 |
import eu.etaxonomy.cdm.io.excel.common.ExcelRowBase; |
|
| 29 | 30 |
import eu.etaxonomy.cdm.model.agent.Person; |
| 30 | 31 |
import eu.etaxonomy.cdm.model.agent.Team; |
| 31 | 32 |
import eu.etaxonomy.cdm.model.agent.TeamOrPersonBase; |
| ... | ... | |
| 74 | 75 |
*/ |
| 75 | 76 |
|
| 76 | 77 |
@Component |
| 77 |
public class CubaExcelImport extends ExcelImporterBase<CubaImportState> {
|
|
| 78 |
public class CubaExcelImport |
|
| 79 |
extends ExcelImportBase<CubaImportState, CubaImportConfigurator, ExcelRowBase> {
|
|
| 78 | 80 |
private static final long serialVersionUID = -747486709409732371L; |
| 79 | 81 |
private static final Logger logger = Logger.getLogger(CubaExcelImport.class); |
| 80 | 82 |
|
| app-import/src/main/java/eu/etaxonomy/cdm/io/cyprus/CyprusDistributionImport.java | ||
|---|---|---|
| 26 | 26 |
import eu.etaxonomy.cdm.common.CdmUtils; |
| 27 | 27 |
import eu.etaxonomy.cdm.io.common.mapping.IInputTransformer; |
| 28 | 28 |
import eu.etaxonomy.cdm.io.common.mapping.UndefinedTransformerMethodException; |
| 29 |
import eu.etaxonomy.cdm.io.excel.common.ExcelImporterBase; |
|
| 29 |
import eu.etaxonomy.cdm.io.excel.common.ExcelImportBase; |
|
| 30 |
import eu.etaxonomy.cdm.io.excel.common.ExcelRowBase; |
|
| 30 | 31 |
import eu.etaxonomy.cdm.model.common.CdmBase; |
| 31 | 32 |
import eu.etaxonomy.cdm.model.common.OriginalSourceType; |
| 32 | 33 |
import eu.etaxonomy.cdm.model.common.TermType; |
| ... | ... | |
| 51 | 52 |
*/ |
| 52 | 53 |
|
| 53 | 54 |
@Component |
| 54 |
public class CyprusDistributionImport extends ExcelImporterBase<CyprusImportState> {
|
|
| 55 |
public class CyprusDistributionImport |
|
| 56 |
extends ExcelImportBase<CyprusImportState, CyprusImportConfigurator, ExcelRowBase> {
|
|
| 55 | 57 |
private static final long serialVersionUID = -8527569026580975181L; |
| 56 | 58 |
private static final Logger logger = Logger.getLogger(CyprusDistributionImport.class); |
| 57 | 59 |
|
| app-import/src/main/java/eu/etaxonomy/cdm/io/cyprus/CyprusExcelImport.java | ||
|---|---|---|
| 24 | 24 |
import eu.etaxonomy.cdm.io.common.TdwgAreaProvider; |
| 25 | 25 |
import eu.etaxonomy.cdm.io.common.mapping.IInputTransformer; |
| 26 | 26 |
import eu.etaxonomy.cdm.io.common.mapping.UndefinedTransformerMethodException; |
| 27 |
import eu.etaxonomy.cdm.io.excel.common.ExcelImporterBase; |
|
| 27 |
import eu.etaxonomy.cdm.io.excel.common.ExcelImportBase; |
|
| 28 |
import eu.etaxonomy.cdm.io.excel.common.ExcelRowBase; |
|
| 28 | 29 |
import eu.etaxonomy.cdm.model.common.Language; |
| 29 | 30 |
import eu.etaxonomy.cdm.model.description.Distribution; |
| 30 | 31 |
import eu.etaxonomy.cdm.model.description.Feature; |
| ... | ... | |
| 50 | 51 |
*/ |
| 51 | 52 |
|
| 52 | 53 |
@Component |
| 53 |
public class CyprusExcelImport extends ExcelImporterBase<CyprusImportState> {
|
|
| 54 |
private static final Logger logger = Logger.getLogger(CyprusExcelImport.class); |
|
| 54 |
public class CyprusExcelImport |
|
| 55 |
extends ExcelImportBase<CyprusImportState, CyprusImportConfigurator, ExcelRowBase> {
|
|
| 56 |
|
|
| 57 |
private static final long serialVersionUID = 4449832452730987788L; |
|
| 58 |
|
|
| 59 |
private static final Logger logger = Logger.getLogger(CyprusExcelImport.class); |
|
| 55 | 60 |
|
| 56 | 61 |
public static Set<String> validMarkers = new HashSet<String>(Arrays.asList(new String[]{"", "valid", "accepted", "a", "v", "t"}));
|
| 57 | 62 |
public static Set<String> synonymMarkers = new HashSet<String>(Arrays.asList(new String[]{"", "invalid", "synonym", "s", "i"}));
|
| ... | ... | |
| 127 | 132 |
state.setCyprusRow(cyprusRow); |
| 128 | 133 |
|
| 129 | 134 |
for (String originalKey: keys) {
|
| 130 |
Integer index = 0; |
|
| 131 | 135 |
String indexedKey = CdmUtils.removeDuplicateWhitespace(originalKey.trim()).toString(); |
| 132 | 136 |
String[] split = indexedKey.split("_");
|
| 133 | 137 |
String key = split[0]; |
| 134 | 138 |
if (split.length > 1){
|
| 135 | 139 |
String indexString = split[1]; |
| 136 | 140 |
try {
|
| 137 |
index = Integer.valueOf(indexString);
|
|
| 141 |
Integer.valueOf(indexString); |
|
| 138 | 142 |
} catch (NumberFormatException e) {
|
| 139 | 143 |
String message = "Index must be integer"; |
| 140 | 144 |
logger.error(message); |
| ... | ... | |
| 193 | 197 |
return; |
| 194 | 198 |
} |
| 195 | 199 |
|
| 196 |
private static INonViralNameParser nameParser = NonViralNameParserImpl.NewInstance(); |
|
| 200 |
private static INonViralNameParser<INonViralName> nameParser = NonViralNameParserImpl.NewInstance();
|
|
| 197 | 201 |
private static NomenclaturalCode nc = NomenclaturalCode.ICNAFP; |
| 198 | 202 |
private Feature redBookCategory; |
| 199 | 203 |
private Feature endemism; |
| ... | ... | |
| 513 | 517 |
* @param nc |
| 514 | 518 |
* @return |
| 515 | 519 |
*/ |
| 516 |
private TaxonBase createTaxon(CyprusImportState state, Rank rank, String taxonNameStr, |
|
| 517 |
Class statusClass, NomenclaturalCode nc) {
|
|
| 518 |
TaxonBase taxonBase; |
|
| 520 |
private TaxonBase<?> createTaxon(CyprusImportState state, Rank rank, String taxonNameStr,
|
|
| 521 |
Class<?> statusClass, NomenclaturalCode nc) {
|
|
| 522 |
TaxonBase<?> taxonBase;
|
|
| 519 | 523 |
INonViralName taxonNameBase = null; |
| 520 | 524 |
if (nc == NomenclaturalCode.ICVCN){
|
| 521 | 525 |
logger.warn("ICVCN not yet supported");
|
| ... | ... | |
| 552 | 556 |
Classification tree = state.getTree(sec); |
| 553 | 557 |
if (tree == null){
|
| 554 | 558 |
tree = makeTree(state, sec); |
| 555 |
tree.setTitleCache(state.getConfig().getSourceReferenceTitle()); |
|
| 559 |
tree.setTitleCache(state.getConfig().getSourceReferenceTitle(), true);
|
|
| 556 | 560 |
} |
| 557 | 561 |
if (sec.equals(childTaxon.getSec())){
|
| 558 | 562 |
success &= (null != tree.addParentChild(parentTaxon, childTaxon, citation, microCitation)); |
| app-import/src/main/java/eu/etaxonomy/cdm/io/mexico/SimpleExcelTaxonImport.java | ||
|---|---|---|
| 15 | 15 |
|
| 16 | 16 |
import org.apache.log4j.Logger; |
| 17 | 17 |
|
| 18 |
import eu.etaxonomy.cdm.io.excel.common.ExcelImportBase; |
|
| 18 | 19 |
import eu.etaxonomy.cdm.io.excel.common.ExcelImportConfiguratorBase; |
| 19 |
import eu.etaxonomy.cdm.io.excel.common.ExcelImporterBase;
|
|
| 20 |
import eu.etaxonomy.cdm.io.excel.common.ExcelRowBase;
|
|
| 20 | 21 |
import eu.etaxonomy.cdm.model.agent.Person; |
| 21 | 22 |
import eu.etaxonomy.cdm.model.agent.Team; |
| 22 | 23 |
import eu.etaxonomy.cdm.model.agent.TeamOrPersonBase; |
| ... | ... | |
| 38 | 39 |
* @date 16.06.2016 |
| 39 | 40 |
*/ |
| 40 | 41 |
public abstract class SimpleExcelTaxonImport<CONFIG extends ExcelImportConfiguratorBase> |
| 41 |
extends ExcelImporterBase<SimpleExcelTaxonImportState<CONFIG>>{
|
|
| 42 |
extends ExcelImportBase<SimpleExcelTaxonImportState<CONFIG>, CONFIG, ExcelRowBase>{
|
|
| 42 | 43 |
|
| 43 | 44 |
private static final long serialVersionUID = -4345647703312616421L; |
| 44 | 45 |
|
| app-import/src/main/java/eu/etaxonomy/cdm/io/wp6/CommonNameExcelImport.java | ||
|---|---|---|
| 22 | 22 |
|
| 23 | 23 |
import eu.etaxonomy.cdm.common.CdmUtils; |
| 24 | 24 |
import eu.etaxonomy.cdm.io.common.mapping.UndefinedTransformerMethodException; |
| 25 |
import eu.etaxonomy.cdm.io.excel.common.ExcelImporterBase; |
|
| 25 |
import eu.etaxonomy.cdm.io.excel.common.ExcelImportBase; |
|
| 26 |
import eu.etaxonomy.cdm.io.excel.common.ExcelRowBase; |
|
| 26 | 27 |
import eu.etaxonomy.cdm.model.common.DefinedTermBase; |
| 27 | 28 |
import eu.etaxonomy.cdm.model.common.Language; |
| 28 | 29 |
import eu.etaxonomy.cdm.model.common.OriginalSourceType; |
| ... | ... | |
| 43 | 44 |
*/ |
| 44 | 45 |
|
| 45 | 46 |
@Component |
| 46 |
public class CommonNameExcelImport extends ExcelImporterBase<CichorieaeCommonNameImportState> {
|
|
| 47 |
public class CommonNameExcelImport |
|
| 48 |
extends ExcelImportBase<CichorieaeCommonNameImportState, CommonNameImportConfigurator, ExcelRowBase> {
|
|
| 47 | 49 |
|
| 48 | 50 |
private static final long serialVersionUID = 747044451715401750L; |
| 49 | 51 |
private static final Logger logger = Logger.getLogger(CommonNameExcelImport.class); |
| app-import/src/main/java/eu/etaxonomy/cdm/io/wp6/CommonNameRow.java | ||
|---|---|---|
| 27 | 27 |
/** |
| 28 | 28 |
* @author a.babadshanjan |
| 29 | 29 |
* @created 13.01.2009 |
| 30 |
* @version 1.0 |
|
| 31 | 30 |
*/ |
| 32 | 31 |
public class CommonNameRow {
|
| 32 |
|
|
| 33 | 33 |
private static final Logger logger = Logger.getLogger(CommonNameRow.class); |
| 34 | 34 |
|
| 35 | 35 |
|
Also available in: Unified diff
fix #6790 IO class hierarchy creates problems in eclipse in cdmlib-apps