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/**
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* Copyright (C) 2015 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.app.euromed;
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import java.util.HashSet;
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import java.util.Set;
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import java.util.UUID;
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import org.apache.log4j.Logger;
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import eu.etaxonomy.cdm.api.application.CdmApplicationController;
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import eu.etaxonomy.cdm.api.application.ICdmRepository;
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import eu.etaxonomy.cdm.api.service.UpdateResult;
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import eu.etaxonomy.cdm.api.service.description.AggregationMode;
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import eu.etaxonomy.cdm.api.service.description.DistributionAggregation;
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import eu.etaxonomy.cdm.api.service.description.DistributionAggregationConfiguration;
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import eu.etaxonomy.cdm.app.common.CdmDestinations;
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import eu.etaxonomy.cdm.common.JvmLimitsException;
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import eu.etaxonomy.cdm.common.monitor.DefaultProgressMonitor;
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import eu.etaxonomy.cdm.database.DbSchemaValidation;
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import eu.etaxonomy.cdm.database.ICdmDataSource;
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import eu.etaxonomy.cdm.filter.TaxonNodeFilter;
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import eu.etaxonomy.cdm.model.name.Rank;
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/**
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* @author a.mueller
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* @since 18.10.2019
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*/
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public class EuroMedDistributionAggregationActivator {
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private static final Logger logger = Logger.getLogger(EuroMedDistributionAggregationActivator.class);
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//database validation status (create, update, validate ...)
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static DbSchemaValidation dbSchemaValidation = DbSchemaValidation.VALIDATE;
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// static final ICdmDataSource cdmDestination = CdmDestinations.cdm_local_mysql_pesi_euromed();
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// static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_euroMed();
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static final ICdmDataSource cdmDestination = CdmDestinations.cdm_production_euromed();
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//Actinolema
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// static final UUID subtreeUuid = UUID.fromString("108745e9-c740-4c88-a2bb-2304a797c827");
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//Apiaceae
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// static final UUID subtreeUuid = UUID.fromString("236f19ad-0eba-4cdd-a839-41348c0a7b38");
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//Asteranae
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// static final UUID subtreeUuid = UUID.fromString("7255db07-bbe0-43f6-921b-5c68c65e343f");
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//Magnoliopsida
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static final UUID subtreeUuid = UUID.fromString("342959e1-eb51-4992-bc60-80dd650727c9");
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private void doImport(ICdmDataSource cdmDestination){
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logger.info("start");
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ICdmRepository app = CdmApplicationController.NewInstance(cdmDestination, dbSchemaValidation);
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DistributionAggregation distributionAggregation = new DistributionAggregation();
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Set<UUID> subtreeUuids = new HashSet<>();
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subtreeUuids.add(subtreeUuid);
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TaxonNodeFilter filter = TaxonNodeFilter.NewInstance(null, subtreeUuids, null, null, null,
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null, Rank.uuidGenus);
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DistributionAggregationConfiguration aggregationConfig =
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DistributionAggregationConfiguration.NewInstance(
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AggregationMode.byToParent(),
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null,
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filter,
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DefaultProgressMonitor.NewInstance());
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try {
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UpdateResult result = distributionAggregation.invoke(aggregationConfig, app);
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System.out.println("Status: " + result.getStatus());
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System.out.println("Exceptions: " + result.getExceptions());
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for (Exception ex: result.getExceptions()){
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ex.printStackTrace();
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}
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System.out.println("Size: " + result.getUpdatedCdmIds().size());
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} catch (JvmLimitsException e) {
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e.printStackTrace();
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}
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}
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public static void main(String[] args) {
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EuroMedDistributionAggregationActivator me = new EuroMedDistributionAggregationActivator();
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me.doImport(cdmDestination);
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System.exit(0);
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}
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}
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