EDIT

/**

 * Copyright (C) 2007 EDIT

 * European Distributed Institute of Taxonomy

 * http://www.e-taxonomy.eu

 *

 * The contents of this file are subject to the Mozilla Public License Version 1.1

 * See LICENSE.TXT at the top of this package for the full license terms.

 */

package eu.etaxonomy.cdm.io.redlist.gefaesspflanzen;

import java.sql.ResultSet;

import java.sql.SQLException;

import java.util.HashMap;

import java.util.HashSet;

import java.util.Map;

import java.util.Set;

import org.apache.log4j.Logger;

import org.springframework.stereotype.Component;

import eu.etaxonomy.cdm.common.CdmUtils;

import eu.etaxonomy.cdm.io.common.DbImportBase;

import eu.etaxonomy.cdm.io.common.IPartitionedIO;

import eu.etaxonomy.cdm.io.common.ImportHelper;

import eu.etaxonomy.cdm.io.common.ResultSetPartitioner;

import eu.etaxonomy.cdm.io.common.mapping.UndefinedTransformerMethodException;

import eu.etaxonomy.cdm.model.agent.AgentBase;

import eu.etaxonomy.cdm.model.common.CdmBase;

import eu.etaxonomy.cdm.model.name.BotanicalName;

import eu.etaxonomy.cdm.model.name.Rank;

import eu.etaxonomy.cdm.model.name.TaxonNameBase;

/**

 *

 * @author pplitzner

 * @date Mar 1, 2016

 *

 */

@Component

@SuppressWarnings("serial")

public class RedListGefaesspflanzenImportNames extends DbImportBase<RedListGefaesspflanzenImportState, RedListGefaesspflanzenImportConfigurator> {

    private static final Logger logger = Logger.getLogger(RedListGefaesspflanzenImportNames.class);

    private static final String tableName = "Rote Liste Gefäßpflanzen";

    private static final String pluralString = "names";

    private static final String TAXON_NAMESPACE = "name";

    private static final String AUTHOR_KOMB_NAMESPACE = "author_komb";

    private static final String AUTHOR_BASI_NAMESPACE = "author_basi";

    public RedListGefaesspflanzenImportNames() {

        super(tableName, pluralString);

    }

    @Override

    protected String getIdQuery(RedListGefaesspflanzenImportState state) {

        return "SELECT NAMNR "

                + "FROM V_TAXATLAS_D20_EXPORT t "

                + " ORDER BY NAMNR";

    }

    @Override

    protected String getRecordQuery(RedListGefaesspflanzenImportConfigurator config) {

        String result = " SELECT * "

                + " FROM V_TAXATLAS_D20_EXPORT t "

                + " WHERE t.NAMNR IN (@IDSET)";

        result = result.replace("@IDSET", IPartitionedIO.ID_LIST_TOKEN);

        return result;

    }

    @Override

    protected void doInvoke(RedListGefaesspflanzenImportState state) {

        super.doInvoke(state);

    }

    @Override

    public boolean doPartition(ResultSetPartitioner partitioner, RedListGefaesspflanzenImportState state) {

        ResultSet rs = partitioner.getResultSet();

        Set<TaxonNameBase> taxaToSave = new HashSet<TaxonNameBase>();

        try {

            while (rs.next()){

                makeSingleName(state, rs, taxaToSave);

            }

        } catch (SQLException e) {

            e.printStackTrace();

        }

        getNameService().saveOrUpdate(taxaToSave);

        return true;

    }

    private void makeSingleName(RedListGefaesspflanzenImportState state, ResultSet rs, Set<TaxonNameBase> namesToSave)

            throws SQLException {

        long id = rs.getLong("NAMNR");

        String taxNameString = rs.getString("TAXNAME");

        String rangString = rs.getString("RANG");

        String ep1String = rs.getString("EPI1");

        String ep2String = rs.getString("EPI2");

        String ep3String = rs.getString("EPI3");

        String nomZusatzString = rs.getString("NOM_ZUSATZ");

        String zusatzString = rs.getString("ZUSATZ");

        if(CdmUtils.isBlank(taxNameString) && CdmUtils.isBlank(ep1String)){

            logger.error("NAMNR: "+id+" No name found!");

        }

        Rank rank = makeRank(state, rangString);

        BotanicalName name = BotanicalName.NewInstance(rank);

        //ep1 should always be present

        name.setGenusOrUninomial(ep1String);

        if(rank==Rank.SPECIES()){

            name.setGenusOrUninomial(ep1String);

        }

        //add author

        AgentBase authorKomb = getAgentService().load(state.getAuthorKombMap().get(id));

//        name.setCombinationAuthorship(authorKomb);

        //id

        ImportHelper.setOriginalSource(name, state.getTransactionalSourceReference(), id, TAXON_NAMESPACE);

    }

    private Rank makeRank(RedListGefaesspflanzenImportState state, String rankStr) {

        Rank rank = null;

        try {

            rank = state.getTransformer().getRankByKey(rankStr);

        } catch (UndefinedTransformerMethodException e) {

            e.printStackTrace();

        }

        if(rank==null){

            logger.error(rankStr+" could not be associated to a known rank.");

        }

        return rank;

    }

    @Override

    public Map<Object, Map<String, ? extends CdmBase>> getRelatedObjectsForPartition(ResultSet rs,

            RedListGefaesspflanzenImportState state) {

        Map<Object, Map<String, ? extends CdmBase>> result = new HashMap<>();

//        Map<Long, AgentBase<?>> authorKombMap = new HashMap<>();

//        Map<Long, AgentBase<?>> authorBasiMap = new HashMap<>();

//

//        //load authors

//        for(Entry<Long, UUID> entry:state.getAuthorKombMap().entrySet()){

//            authorKombMap.put(entry.getKey(), getAgentService().load(entry.getValue()));

//        }

//        for(Entry<Long, UUID> entry:state.getAuthorBasiMap().entrySet()){

//            authorBasiMap.put(entry.getKey(), getAgentService().load(entry.getValue()));

//        }

//        try {

//            while (rs.next()){

//                long id = rs.getLong("NAMNR");

//            }

//        } catch (SQLException e) {

//            e.printStackTrace();

//        }

//

//        //Authors

//        Set<UUID> uuidSet = new HashSet<>();

//        for (String authorStr : authorKombSet){

//            UUID uuid = state.getAuthorUuid(authorStr);

//            uuidSet.add(uuid);

//        }

//        List<TeamOrPersonBase<?>> authors = (List)getAgentService().find(uuidSet);

//        Map<UUID, TeamOrPersonBase<?>> authorUuidMap = new HashMap<>();

//        for (TeamOrPersonBase<?> author : authors){

//            authorUuidMap.put(author.getUuid(), author);

//        }

//

//        for (String authorStr : authorKombSet){

//            UUID uuid = state.getAuthorUuid(authorStr);

//            TeamOrPersonBase<?> author = authorUuidMap.get(uuid);

//            authorMap.put(authorStr, author);

//        }

//        result.put(AUTHOR_NAMESPACE, authorMap);

//

//        //reference map

//        String nameSpace = REFERENCE_NAMESPACE;

//        Class<?> cdmClass = Reference.class;

//        Set<String> idSet = referenceIdSet;

//        Map<String, Reference<?>> referenceMap = (Map<String, Reference<?>>)getCommonService().getSourcedObjectsByIdInSource(cdmClass, idSet, nameSpace);

//        result.put(nameSpace, referenceMap);

//

//        //secundum

//        UUID secUuid = state.getConfig().getSecUuid();

//        Reference<?> secRef = getReferenceService().find(secUuid);

//        referenceMap.put(secUuid.toString(), secRef);

        return result;

    }

    @Override

    protected boolean doCheck(RedListGefaesspflanzenImportState state) {

        return false;

    }

    @Override

    protected boolean isIgnore(RedListGefaesspflanzenImportState state) {

        return false;

    }

}