Revision bb38665e
Added by Andreas Müller over 10 years ago
| app-import/src/main/java/eu/etaxonomy/cdm/app/wp6/diptera/DipteraCollectionImport.java | ||
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| 18 | 18 |
import java.util.List; |
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import java.util.Map; |
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import org.apache.commons.lang.StringUtils; |
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import org.apache.log4j.Logger; |
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import org.springframework.transaction.TransactionStatus; |
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|
| ... | ... | |
| 29 | 30 |
import eu.etaxonomy.cdm.database.ICdmDataSource; |
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import eu.etaxonomy.cdm.model.agent.Institution; |
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import eu.etaxonomy.cdm.model.occurrence.Collection; |
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import eu.etaxonomy.cdm.model.occurrence.Specimen;
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import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
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import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase; |
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|
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/** |
| ... | ... | |
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* @param colletionMap |
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*/ |
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private void addCollectionsToSpecimen(CdmApplicationController cdmApp, Map<String, Collection> colletionMap) {
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List<SpecimenOrObservationBase> specimens = (cdmApp.getOccurrenceService().list(Specimen.class, null, null, null, null));
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for (SpecimenOrObservationBase specOrObservBase : specimens){
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if (specOrObservBase instanceof Specimen){
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handleSingleSpecimen((Specimen)specOrObservBase, colletionMap);
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List<SpecimenOrObservationBase> specimens = (cdmApp.getOccurrenceService().list(DerivedUnit.class, null, null, null, null));
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for (SpecimenOrObservationBase<?> specOrObservBase : specimens){
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if (specOrObservBase.getRecordBasis().isPreservedSpecimen()){
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handleSingleSpecimen((DerivedUnit)specOrObservBase, colletionMap);
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}else{
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logger.warn("There are specimenOrObservationBase objects which are not of class Specimen. This is probably an error.");
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} |
| ... | ... | |
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* @param specimen |
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* @param colletionMap |
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*/ |
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private void handleSingleSpecimen(Specimen specimen, Map<String, Collection> collectionMap) {
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private void handleSingleSpecimen(DerivedUnit specimen, Map<String, Collection> collectionMap) {
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String titleCache = specimen.getTitleCache(); |
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String collectionCode = getCollectionCode(titleCache); |
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if (CdmUtils.isEmpty(collectionCode)){
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if (StringUtils.isBlank(collectionCode)){
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logger.warn("Collection code is empty for: " + titleCache);
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}else{
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Collection collection = collectionMap.get(collectionCode); |
| ... | ... | |
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institution.setName(instituteName); |
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if (CdmUtils.isNotEmpty(lowerInstitutionName)){
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if (StringUtils.isNotBlank(lowerInstitutionName)){
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Institution lowerInstitution = Institution.NewInstance(); |
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lowerInstitution.setName(lowerInstitutionName); |
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lowerInstitution.setIsPartOf(institution); |
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} |
| 223 | 224 |
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if (CdmUtils.isNotEmpty(higherInstitutionName)){
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if (StringUtils.isNotBlank(higherInstitutionName)){
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Institution higherInstitution = Institution.NewInstance(); |
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higherInstitution.setName(higherInstitutionName); |
| 227 | 228 |
institution.setIsPartOf(higherInstitution); |
Also available in: Unified diff
reintegrate cdmlib-app-3.3 branch into trunk