Revision bb38665e
Added by Andreas Müller over 10 years ago
| app-import/src/main/java/eu/etaxonomy/cdm/app/util/TestDatabase.java | ||
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import eu.etaxonomy.cdm.model.description.TaxonInteraction; |
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import eu.etaxonomy.cdm.model.description.TaxonNameDescription; |
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import eu.etaxonomy.cdm.model.location.NamedAreaType; |
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import eu.etaxonomy.cdm.model.location.WaterbodyOrCountry;
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import eu.etaxonomy.cdm.model.location.Country; |
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import eu.etaxonomy.cdm.model.name.BotanicalName; |
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import eu.etaxonomy.cdm.model.name.NomenclaturalCode; |
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import eu.etaxonomy.cdm.model.name.Rank; |
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import eu.etaxonomy.cdm.model.name.TaxonNameBase; |
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import eu.etaxonomy.cdm.model.occurrence.Specimen;
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import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
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import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase; |
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import eu.etaxonomy.cdm.model.reference.Reference; |
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import eu.etaxonomy.cdm.model.reference.ReferenceFactory; |
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import eu.etaxonomy.cdm.model.taxon.Classification; |
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import eu.etaxonomy.cdm.model.taxon.Synonym; |
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import eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType; |
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import eu.etaxonomy.cdm.model.taxon.Taxon; |
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import eu.etaxonomy.cdm.model.taxon.TaxonBase; |
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import eu.etaxonomy.cdm.model.taxon.TaxonNode; |
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import eu.etaxonomy.cdm.model.taxon.Classification; |
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/** |
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* @author a.babadshanjan |
| ... | ... | |
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logger.info("Setting DB " + dbname);
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String password = AccountStore.readOrStorePassword(dbname, server, username, null); |
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ICdmDataSource datasource = CdmDataSource.NewMySqlInstance(server, dbname, username, password, NomenclaturalCode.ICBN);
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ICdmDataSource datasource = CdmDataSource.NewMySqlInstance(server, dbname, username, password, NomenclaturalCode.ICNAFP);
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return datasource; |
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} |
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|
| ... | ... | |
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Feature feature1 = Feature.BIOLOGY_ECOLOGY(); |
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TaxonNameDescription taxNameDescription = TaxonNameDescription.NewInstance(); |
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taxNameDescription.addFeature(feature1);
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// taxNameDescription.addFeature(feature1); //no longer supported since v3.3
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QuantitativeData element = QuantitativeData.NewInstance(); |
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StatisticalMeasurementValue statisticalValue = StatisticalMeasurementValue.NewInstance(); |
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statisticalValue.setType(StatisticalMeasure.MAX()); |
| ... | ... | |
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element.addStatisticalValue(statisticalValue); |
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taxNameDescription.addElement(element); |
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SpecimenOrObservationBase<?> specimen = Specimen.NewInstance();
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SpecimenOrObservationBase<?> specimen = DerivedUnit.NewPreservedSpecimenInstance();
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specimen.setIndividualCount(12); |
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Feature featureIndAss = Feature.INDIVIDUALS_ASSOCIATION(); |
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TaxonNameDescription newTaxNameDesc = TaxonNameDescription.NewInstance(); |
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newTaxNameDesc.addFeature(featureIndAss);
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// newTaxNameDesc.addFeature(featureIndAss); //no longer supported since v3.3
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IndividualsAssociation indAss = IndividualsAssociation.NewInstance(); |
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indAss.setAssociatedSpecimenOrObservation(specimen); |
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|
| ... | ... | |
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//locationFeature. |
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WaterbodyOrCountry area = WaterbodyOrCountry.NewInstance("", "locationTest", null);
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Country area = Country.NewInstance("", "locationTest", null);
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area.setType(NamedAreaType.NATURAL_AREA()); |
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//WaterbodyOrCountry woC= WaterbodyOrCountry.NewInstance();
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area.addWaterbodyOrCountry(WaterbodyOrCountry.AFGHANISTAN());
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//Country woC= Country.NewInstance();
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area.addCountry(Country.AFGHANISTAN());
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taxDesc.addGeoScope(area); |
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taxDesc.addFeature(locationFeature);
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// taxDesc.addFeature(locationFeature); //no longer supported since v3.3
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root1T.addDescription(taxDesc); |
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|
| ... | ... | |
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//TODO: Adapt to classification |
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taxTree = Classification.NewInstance("TestTree");
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root1TNode = taxTree.addChildTaxon(root1T, sec, null, null);
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child1Node = root1TNode.addChildTaxon(child1, null, null, null);
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child2Node = root1TNode.addChildTaxon(child2, null, null, null);
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child21Node = child2Node.addChildTaxon(child21, null, null, null);
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root1TNode = taxTree.addChildTaxon(root1T, sec, null); |
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child1Node = root1TNode.addChildTaxon(child1, null, null); |
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child2Node = root1TNode.addChildTaxon(child2, null, null); |
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child21Node = child2Node.addChildTaxon(child21, null, null); |
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taxTree2 = Classification.NewInstance("TestTree2");
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root2TNode = taxTree2.addChildTaxon(root2T, sec, null, null);
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root2TNode.addChildTaxon(child1, sec, "p.1010", syn11);
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root2TNode.addChildTaxon(child2, null, null, null);
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root2TNode = taxTree2.addChildTaxon(root2T, sec, null); |
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root2TNode.addChildTaxon(child1, sec, "p.1010").setSynonymToBeUsed(syn11);
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root2TNode.addChildTaxon(child2, null, null); |
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/* |
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root1T.addTaxonomicChild(child1, sec, "p.1010"); |
Also available in: Unified diff
reintegrate cdmlib-app-3.3 branch into trunk