Revision b9cdcc88
Added by Andreas Müller about 8 years ago
| app-import/src/main/java/eu/etaxonomy/cdm/app/cuba/CubaActivator.java | ||
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import org.apache.log4j.Logger; |
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import eu.etaxonomy.cdm.api.application.CdmApplicationController; |
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import eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration; |
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import eu.etaxonomy.cdm.api.service.ITermService; |
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import eu.etaxonomy.cdm.app.common.CdmDestinations; |
| ... | ... | |
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import eu.etaxonomy.cdm.io.cuba.CubaImportConfigurator; |
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import eu.etaxonomy.cdm.io.cuba.CubaTransformer; |
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import eu.etaxonomy.cdm.model.agent.Person; |
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import eu.etaxonomy.cdm.model.agent.Team; |
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import eu.etaxonomy.cdm.model.description.Feature; |
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import eu.etaxonomy.cdm.model.description.FeatureNode; |
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import eu.etaxonomy.cdm.model.description.FeatureTree; |
| ... | ... | |
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static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE; |
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// static final ICdmDataSource cdmDestination = CdmDestinations.localH2(); |
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// static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql_test();
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static final ICdmDataSource cdmDestination = CdmDestinations.cdm_cuba_production(); |
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static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql_test(); |
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// static final ICdmDataSource cdmDestination = CdmDestinations.cdm_cuba_production();
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static boolean invers = false; |
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|
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static boolean include = !invers; |
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//feature tree uuid |
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public static final UUID featureTreeUuid = UUID.fromString("dad6b9b5-693f-4367-a7aa-076cc9c99476");
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//classification |
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static final UUID classificationUuid = UUID.fromString("5de394de-9c76-4b97-b04d-71be31c7f44b");
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private static final String classificationName = "Flora of Cuba";
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private static final String classificationName = "Cuba Checklist";
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static final String sourceReferenceTitle = "Cuba import";
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static final String sourceReferenceTitle = "Cuba Checklist Word Documents";
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//check - import |
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static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK; |
| ... | ... | |
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//... |
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if (doAsteraceae){
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doSource(asteraceae(), config, myImport, doVocabularies); |
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doSingleSource(asteraceae(), config, myImport, doVocabularies);
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} |
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if (doConvolvulaceae){
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doSource(convolvulaceae(), config, myImport, doVocabularies); |
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doSingleSource(convolvulaceae(), config, myImport, doVocabularies);
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} |
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if (doCyperaceae){
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doSource(cyperaceae(), config, myImport, doVocabularies); |
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doSingleSource(cyperaceae(), config, myImport, doVocabularies);
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} |
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if (doDicotA_C){
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doSource(dicotA_C(), config, myImport, doVocabularies); |
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doSingleSource(dicotA_C(), config, myImport, doVocabularies);
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} |
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if (doDicotD_M){
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doSource(dicotD_M(), config, myImport, doVocabularies); |
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doSingleSource(dicotD_M(), config, myImport, doVocabularies);
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} |
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if (doDicotN_Z){
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doSource(dicotN_Z(), config, myImport, doVocabularies); |
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doSingleSource(dicotN_Z(), config, myImport, doVocabularies);
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} |
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if (doEuphorbiaceae){
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doSource(euphorbiaceae(), config, myImport, doVocabularies); |
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doSingleSource(euphorbiaceae(), config, myImport, doVocabularies);
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} |
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if (doFabaceae){
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doSource(fabaceae(), config, myImport, doVocabularies); |
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doSingleSource(fabaceae(), config, myImport, doVocabularies);
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} |
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if (doGymnospermae){
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doSource(gymnospermae(), config, myImport, doVocabularies); |
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doSingleSource(gymnospermae(), config, myImport, doVocabularies);
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} |
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if (doLamVerbenaceae){
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doSource(lamVerbenaceae(), config, myImport, doVocabularies); |
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doSingleSource(lamVerbenaceae(), config, myImport, doVocabularies);
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} |
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if (doMalpighiaceae){
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doSource(malpighiaceae(), config, myImport, doVocabularies); |
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doSingleSource(malpighiaceae(), config, myImport, doVocabularies);
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} |
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if (doMelastomataceae){
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doSource(melastomataceae(), config, myImport, doVocabularies); |
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doSingleSource(melastomataceae(), config, myImport, doVocabularies);
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} |
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if (doMonocots){
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doSource(monocots(), config, myImport, doVocabularies); |
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doSingleSource(monocots(), config, myImport, doVocabularies);
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} |
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if (doMyrtaceae){
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doSource(myrtaceae(), config, myImport, doVocabularies); |
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doSingleSource(myrtaceae(), config, myImport, doVocabularies);
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} |
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if (doOrchidaceae){
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doSource(orchidaceae(), config, myImport, doVocabularies); |
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doSingleSource(orchidaceae(), config, myImport, doVocabularies);
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} |
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if (doRubiaceae){
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doSource(rubiaceae(), config, myImport, doVocabularies); |
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doSingleSource(rubiaceae(), config, myImport, doVocabularies);
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} |
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if (doUrticaceae){
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doSource(urticaceae(), config, myImport, doVocabularies); |
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doSingleSource(urticaceae(), config, myImport, doVocabularies);
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} |
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//deduplicate |
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if (doDeduplicate){
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ICdmApplicationConfiguration app = myImport.getCdmAppController(); |
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logger.warn("Start deduplication ...");
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ICdmApplicationConfiguration app = myImport.getCdmAppController(); |
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if (app == null){
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app = CdmApplicationController.NewInstance(cdmDestination, hbm2dll, false); |
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} |
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int count = app.getAgentService().deduplicate(Person.class, null, null); |
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logger.warn("Deduplicated " + count + " persons.");
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// count = app.getAgentService().deduplicate(Team.class, null, null);
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// logger.warn("Deduplicated " + count + " teams.");
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count = app.getAgentService().deduplicate(Team.class, null, null); |
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logger.warn("Deduplicated " + count + " teams.");
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count = app.getReferenceService().deduplicate(Reference.class, null, null); |
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logger.warn("Deduplicated " + count + " references.");
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} |
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System.exit(0); |
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} |
| ... | ... | |
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* @param config |
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* @param myImport |
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*/ |
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private void doSource(URI source, CubaImportConfigurator config, |
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private void doSingleSource(URI source, CubaImportConfigurator config,
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CdmDefaultImport<CubaImportConfigurator> myImport, boolean doVocabularies) {
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config.setSource(source); |
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String message = "Start import from ("+ source.toString() + ") ...";
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String fileName = source.toString(); |
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fileName = fileName.substring(fileName.lastIndexOf("/") + 1 );
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String message = "Start import from ("+ fileName + ") ...";
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System.out.println(message); |
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logger.warn(message); |
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config.setSourceReference(getSourceReference(sourceReferenceTitle));
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config.setSourceReference(getSourceReference(fileName));
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config.setDoVocabularies(doVocabularies); |
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myImport.invoke(config); |
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|
| ... | ... | |
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System.out.println("End import from ("+ source.toString() + ")...");
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} |
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private final Reference<?> inRef = ReferenceFactory.newGeneric(); |
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private Reference<?> getSourceReference(String string) {
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Reference<?> result = ReferenceFactory.newGeneric(); |
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result.setTitleCache(string, true); |
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result.setInReference(inRef); |
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inRef.setTitleCache(sourceReferenceTitle, true); |
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return result; |
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} |
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Also available in: Unified diff
Latest changes to Cuba import