EDIT

 * The contents of this file are subject to the Mozilla Public License Version 1.1

 * See LICENSE.TXT at the top of this package for the full license terms.

 */

package eu.etaxonomy.cdm.app.abcdImport;

import java.io.File;

import java.net.URI;

    final static String xmlSource = "/home/pkelbert/Documents/Proibiosphere/Presentations/Demo/ABCD/calvum.xml";

    static final ICdmDataSource cdmDestination = CdmDestinations.localH2();

//    static final ICdmDataSource cdmDestination = CdmDestinations.makeDestination(DatabaseTypeEnum.H2, "localhost", "abcd_import_test", 8082, "root", "root");

    static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK;

    public static void main(String[] args) {

        URI source;

        try {

            URI uri = new File(xmlSource).toURI();

            System.out.println("Start import from  ABCD Specimen data("+ source.toString() + ") ...");

            ICdmDataSource destination = cdmDestination;

////            specimenImportConfigurator.setClassificationName(specimenImportConfigurator.getSourceReferenceTitle());

            specimenImportConfigurator.setSourceSecId("specimen");

        } catch (Exception e) {

            e.printStackTrace();

        }

    }

 * The contents of this file are subject to the Mozilla Public License Version 1.1

 * See LICENSE.TXT at the top of this package for the full license terms.

 */

package eu.etaxonomy.cdm.app.abcdImport;

import java.io.File;

import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;

import eu.etaxonomy.cdm.io.specimen.excel.in.SpecimenSynthesysExcelImportConfigurator;

/**

 * @author PK

 * @since 19.09.2008

 */

public class SynthesysCacheActivator {

    @SuppressWarnings("unused")

    private static Logger logger = Logger.getLogger(SynthesysCacheActivator.class);

//    final static String xmlSource = "/home/pkelbert/workspace/proibiosphere/cdmlib-io/target/test-classes/eu/etaxonomy/cdm/io/specimen/excel/in/ExcelImportConfiguratorTest-input.xls";

    final static String xmlSource = "/home/pkelbert/Documents/Proibiosphere/ChenopodiumQuentin/GBIF data etc.xls";

//  static final ICdmDataSource cdmDestination = CdmDestinations.mon_cdm();

//    static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;

    static final ICdmDataSource cdmDestination = CdmDestinations.cdm_local_proibiosphere_chenopodium();

    static DbSchemaValidation hbm2dll = DbSchemaValidation.VALIDATE;

    static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK;

    public static void main(String[] args) {

        URI source;

        try {

            e.printStackTrace();

        }

    }

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.app.caryophyllales;

import java.io.File;

 * @since May 2014

 */

public class TcsSources {

	public static URI normalExplicit(){

		try {

			e.printStackTrace();

			throw new RuntimeException(e);

		}

	}

	public static String arecaceae(){

		} catch (MalformedURLException e) {

			throw new RuntimeException(e);

		}

	}

	public static String tcsXml_localPath(){

		File file = new File("C:\\localCopy\\Data\\tdwg\\Cichorium_tcs.xml");

		String sourceUrl;

			throw new RuntimeException(e);

		}

		return sourceUrl;

	}

	public static String tcsXmlTest_local2(){

		URL resourceUrl = new TcsSources().getClass().getResource(sourceUrl);

		logger.debug("TcsRdfSource " +  resourceUrl.toString());

		return resourceUrl.toString();

	}

 * The contents of this file are subject to the Mozilla Public License Version 1.1

 * See LICENSE.TXT at the top of this package for the full license terms.

 */

package eu.etaxonomy.cdm.app.jaxb;

import java.io.File;

//		String username = "edit";

//		sourceParam = CdmDataSource.NewMySqlInstance(server, database, username, AccountStore.readOrStorePassword(server, database, username, null));

		JaxbExportConfigurator jaxbExportConfigurator;

		if (file !=null && sourceParam != null){

			jaxbExportConfigurator = JaxbExportConfigurator.NewInstance(sourceParam, file);

			jaxbExportConfigurator = JaxbExportConfigurator.NewInstance(cdmSource, new File(exportFileName));

		}

		CdmDefaultExport<JaxbExportConfigurator> jaxbExport =

			new CdmDefaultExport<JaxbExportConfigurator>();

		// invoke export

		logger.debug("Invoking Jaxb export");

		jaxbExport.invoke(jaxbExportConfigurator);

		return null;

	}

	private CdmApplicationController initDb(ICdmDataSource db) {

		// Init source DB

		CdmApplicationController appCtrInit = TestDatabase.initDb(db, DbSchemaValidation.VALIDATE, false);

		return appCtrInit;

	}

	// Load test data to DB

	private void loadTestData(CdmApplicationController appCtrInit) {

		TestDatabase.loadTestData("", appCtrInit);

	}

	public static void main(String[] args) {

		JaxbExportActivator sc = new JaxbExportActivator();

			// TODO Auto-generated catch block

			e.printStackTrace();

		}

	}

/**

 * Copyright (C) 2008 EDIT

 * http://www.e-taxonomy.eu

 * The contents of this file are subject to the Mozilla Public License Version 1.1

 * See LICENSE.TXT at the top of this package for the full license terms.

 */

package eu.etaxonomy.cdm.app.jaxb;

import java.io.File;

/**

 * @author a.babadshanjan

 * @since 25.09.2008

 * cdmlib-persistence\target\test-classes\eu\etaxonomy\cdm\h2\LocalH2

 */

public class JaxbImportActivator {

//	private static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql_test();

	//if you run from IDE it may run into {cdmlib-folder}\cdmlib-persistence\target\test-classes\eu\etaxonomy\cdm\h2\LocalH2\

	private static final ICdmDataSource cdmDestination = CdmDestinations.localH2Armeria();

	// Import:

		//"C:\\workspace\\cdmlib_2.2\\cdmlib-io\\src\\test\\resources\\eu\\etaxonomy\\cdm\\io\\jaxb\\export_test_app_import.xml";

//		"file:/C:/export_test_app_import.xml";

//	"file:/C:/opt/data/rl/201406041541-jaxb_export-Regenwuermer.xml";

//	"//PESIIMPORT3/redlist/standardliste/standardliste_jaxb.xml";

	"//PESIIMPORT3/redlist/201411261506-jaxb_export-armeria_demo_local.xml";

	/** NUMBER_ROWS_TO_RETRIEVE = 0 is the default case to retrieve all rows.

	 *  Only root taxa and no synonyms and relationships are retrieved. */

	private static final int NUMBER_ROWS_TO_RETRIEVE = 0;

			if (importFileParamString !=null && destination != null){

				URI importFileParam = new URI(importFileParamString);

				jaxbImportConfigurator = JaxbImportConfigurator.NewInstance(importFileParam, destination);

				URI importFileName = new URI(importFileNameString);

				jaxbImportConfigurator = JaxbImportConfigurator.NewInstance(importFileName, destination);

			} else if (importFileParamString !=null ){

				URI importFileName = new URI(importFileNameString);

				jaxbImportConfigurator = JaxbImportConfigurator.NewInstance(importFileName, cdmDestination);

			}

				new CdmDefaultImport<JaxbImportConfigurator>();

			// invoke import

			logger.debug("Invoking Jaxb import");

			jaxbImport.invoke(jaxbImportConfigurator, destination, true);

		} catch (URISyntaxException e) {

			e.printStackTrace();

		}else {

			jaxbImportConfigurator = JaxbImportConfigurator.NewInstance(importUri, cdmDestination);

		}

		// invoke import

		logger.debug("Invoking Jaxb import");

		jaxbImport.invoke(jaxbImportConfigurator, destination, true);

	}

	private CdmApplicationController initDb(ICdmDataSource db) {

		// Init source DB

		CdmApplicationController appCtrInit = null;

		appCtrInit = TestDatabase.initDb(db, DbSchemaValidation.CREATE, false);

		return appCtrInit;

	}

	// Load test data to DB

	private void loadTestData(CdmApplicationController appCtrInit) {

		TestDatabase.loadTestData("", appCtrInit);

	}

	public static String chooseFile(String[] args) {

		for (String dest: args){

			if (dest.endsWith(".xml")){

				return args[0];

		return null;

	}

	public static void main(String[] args) {

		JaxbImportActivator jia = new JaxbImportActivator();

		}

		jia.invokeImport(uri, destination);

	}

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.app.phycobank;

import java.io.File;

import eu.etaxonomy.cdm.model.reference.Reference;

import eu.etaxonomy.cdm.model.reference.ReferenceFactory;

/**

 * @author a.kohlbecker

 * @since Jul 26, 2016

 */

public class IAPTActivator {

    private static final Logger logger = Logger.getLogger(IAPTActivator.class);

        doSingleSource(fileURI(), config, myImport);

        System.exit(0);

    }

    private void doSingleSource(URI source, IAPTImportConfigurator config, CdmDefaultImport<IAPTImportConfigurator> myImport) {

        config.setSource(source);

        String fileName = source.toString();

        return f.toURI();

    }

    public static void main(String[] args) {

        if(args.length == 0){

            logger.warn("Missing argument, valid values are: 'import' , 'createRegistrations'");

        IAPTActivator me = new IAPTActivator();

        me.doImport(cdmDestination);

    }

 * The contents of this file are subject to the Mozilla Public License Version 1.1

 * See LICENSE.TXT at the top of this package for the full license terms.

 */

package eu.etaxonomy.cdm.app.proibiosphere;

import java.io.File;

import java.net.URI;

    //	final static String xmlSource = "C:\\localCopy\\eclipse\\cdmlib\\app-import\\src\\main\\resources\\specimenABCD\\CDMtabular9c04a474e2_23_09_08.xls";

    static final ICdmDataSource cdmDestination = CdmDestinations.cdm_local_proibiosphere_chenopodium();

    //check - import

    static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK;

    public static void main(String[] args) {

        URI source;

        try {

        } catch (URISyntaxException e) {

            e.printStackTrace();

        }

    }

                }

                documentMap.put(docId, uritmp);

            }

        return documentMap;

    }

	private static void checkTreatmentAvailable(Map<String, List<String>> documents, Map<String, List<String>> docs)

 * The contents of this file are subject to the Mozilla Public License Version 1.1

 * See LICENSE.TXT at the top of this package for the full license terms.

 */

package eu.etaxonomy.cdm.app.sdd;

import java.net.URI;

 * @author h.fradin

 * @author l.morris

 * @since 24.10.2008

 */

public class SDDImportActivator {

	@SuppressWarnings("unused")

       //return loadedDataSource;

       return dataSource;

   }

	public static void main(String[] args) {

		//String sddSource = SDDSources.SDDImport_local(args[0]+args[1]);

		//System.out.println("Start import from SDD("+ sddSource.toString() + ") ...");

		} catch (URISyntaxException e) {

			e.printStackTrace();

		}

	}

/**

* Copyright (C) 2007 EDIT

* http://www.e-taxonomy.eu

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

public class SDDSources {

	@SuppressWarnings("unused")

	private static final Logger logger = Logger.getLogger(SDDSources.class);

	public static URI tdwg_expert(){

//			// TODO Auto-generated catch block

//			e.printStackTrace();

//		}

//		URL url = new SDDSources().getClass().getResource("/sdd/SDD-Test-Simple.xml");

		String sourceUrl = "C:\\localCopy\\tdwg2010\\data\\descriptions\\sdd\\Xper-Cichorium_spinosum.sdd.xml";

//		String sourceUrl = url.toString();

		URI uri = new File(sourceUrl).toURI();

		return uri;

	}

	public static String viola_local(){

		//		SDD XML example from the SDD v1.1 package

		URL url = new SDDSources().getClass().getResource("/sdd/SDD-Test-Simple.xml");

		String sourceUrl = url.toString();

		return sourceUrl;

	}

	public static String SDDImport_local(String filePath){

		//		any SDD XML file

		String sourceUrl = "file:" + filePath;

		return sourceUrl;

	}

	public static String LIAS_local(){

		//		SDD XML example from http://wiki.tdwg.org/twiki/bin/view/SDD/RealWorldExamples_SDD1dot1

		//String sourceUrl = "file:C:/Documents and Settings/lis/Mes documents/SDD/SDD bis/SDD1.1/SDD1.1/examples/LIAS_Main.sdd11/LIAS_Main.sdd11.xml";

		URL url = new SDDSources().getClass().getResource("/sdd/LIAS_Main.sdd11.xml");

		String sourceUrl = url.toString();

		return sourceUrl;

	}

	public static String Erythroneura_local(){

		//		SDD XML example from http://wiki.tdwg.org/twiki/bin/view/SDD/RealWorldExamples_SDD1dot1

		//String sourceUrl = "file:C:/Documents and Settings/lis/Mes documents/SDD/SDD bis/SDD1.1/SDD1.1/examples/Erythroneura.sdd11/Erythroneura.sdd11.xml";

		URL url = new SDDSources().getClass().getResource("/sdd/Erythroneura.sdd11.xml");

		String sourceUrl = url.toString();

		return sourceUrl;

	}

	public static String Cicad_local(){

		//		SDD XML example from http://wiki.tdwg.org/twiki/bin/view/SDD/RealWorldExamples_SDD1dot1

		//String sourceUrl = "file:C:/Documents and Settings/lis/Mes documents/SDD/SDD bis/SDD1.1/SDD1.1/examples/Cicad.sdd11/Cicad.sdd11.xml";

		URL url = new SDDSources().getClass().getResource("/sdd/Cicad.sdd11.xml");

		String sourceUrl = url.toString();

		return sourceUrl;

	}

	public static String ValRosandraFRIDAKey_local(){

		//		SDD XML example from http://wiki.tdwg.org/twiki/bin/view/SDD/RealWorldExamples_SDD1dot1

		//String sourceUrl = "file:C:/Documents and Settings/lis/Mes documents/SDD/SDD bis/SDD1.1/SDD1.1/examples/Val-Rosandra-FRIDA-Key.sdd11/Val-Rosandra-FRIDA-Key.sdd11.xml";

		URL url = new SDDSources().getClass().getResource("/sdd/Val-Rosandra-FRIDA-Key.sdd11.xml");

		String sourceUrl = url.toString();

		return sourceUrl;

	}

	public static String FreshwaterAquaticInsects_local(){

		//		SDD export from an Xper2 application

		String sourceUrl = "file:C:/Documents and Settings/lis/Mes documents/SDD/SDD bis/SDD1.1/SDD1.1/examples/Freshwater aquatic insects/test v2.sdd.xml";

		return sourceUrl;

	}

	public static String cichorieae_Xper2_local(){

		URL url = new SDDSources().getClass().getResource("/sdd/cichorieae-Xper2.xml");

		String sourceUrl = url.toString();

	}

	public static String Cichorieae_DA_export_sdd(){

		String locationString = "/sdd/Xper2-import-export.sdd.xml";

		//String locationString = "/sdd/Cichorieae-DA-export-sdd.xml";

		URL url = new SDDSources().getClass().getResource(locationString);

		String sourceUrl = url.toString();

	}

}

/**

* Copyright (C) 2007 EDIT

* http://www.e-taxonomy.eu

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.app.tcs;

import java.io.File;

/**

 * @author a.mueller

 * @since 20.06.2008

 */

public class TcsSources {

	public static URI normalExplicit(){

		try {

//			URL url = new File(("C:\\localCopy\\eclipse\\cdmlib\\trunk\\app-import\\src\\main\\resources\\excel\\NormalExplicit.xls")).toURL();

			// FIXME what is this????

			URL url = new File("D:\\NormalExplicit.xls").toURI().toURL();

//			URL url = new TcsSources().getClass().getResource("excel/NormalExplicit.xls");

			boolean exists = new File(url.getFile()).exists();

			if (! exists) throw new RuntimeException("File not found: " + url);

			e.printStackTrace();

			throw new RuntimeException(e);

		}

	}

	public static String arecaceae(){

		//	Monocots rdf

		String sourceUrl = "http://dev.e-taxonomy.eu/trac/attachment/wiki/SampleDataConversion/Monocotyledonae/arecaceae.rdf?format=raw";

		logger.debug("TcsSource " +  sourceUrl);

		return sourceUrl;

	}

	public static String taxonX_local(){

		//		Monocots rdf

		//String sourceUrl = "file:C:/localCopy/eclipse/cdmlib/app-import/src/main/resources/palm_tn_29336.xml";

		File sourceDir = new File("target/classes/taxonX/"); //palm_tc_14495.xml

		return sourceDir;

	}

	public static String arecaceae_local(){

		//		Monocots rdf

		//String sourceUrl = "file:C:/localCopy/eclipse/cdmlib/app-import/src/main/resources/arecaceae.rdf";

		URL url = new SDDSources().getClass().getResource("/arecaceae.rdf");

		String sourceUrl = url.toString();

		return sourceUrl;

	}

	public static String tcsXml_cichorium(){

		//		tcsXmlTest.xml

		URL url = new TcsSources().getClass().getResource("/tcs/Cichorium_tcs.xml");

		String sourceUrl = url.toString();

	}

	public static String tcsXml_nyctaginaceae(){

		} catch (MalformedURLException e) {

			throw new RuntimeException(e);

		}

	}

	public static String tcsXml_localPath(){

		File file = new File("C:\\localCopy\\Data\\tdwg\\Cichorium_tcs.xml");

		String sourceUrl;

			throw new RuntimeException(e);

		}

		return sourceUrl;

	public static String tcsXmlTest_local2(){

		//		tcsXmlTest.xml

		URL url = new TcsSources().getClass().getResource("/TcsXmlImportConfiguratorTest-input.xml");

		String sourceUrl = url.toString();

	}

	public static String tcsRdf_globis(){

		//		globis.rdf.xml

		//String sourceUrl = "file:C:/Dokumente und Einstellungen/a.kohlbecker.BGBM/Desktop/globis.rdf.xml";

		URL resourceUrl = new TcsSources().getClass().getResource(sourceUrl);

		logger.debug("TcsRdfSource " +  resourceUrl.toString());

		return resourceUrl.toString();

	public static String tcsRdf_test(){

		//		globis.rdf.xml

		//String sourceUrl = "file:C:/Dokumente und Einstellungen/a.kohlbecker.BGBM/Desktop/globis.rdf.xml";

		URL resourceUrl = new TcsSources().getClass().getResource(sourceUrl);

		logger.debug("TcsRdfSource " +  resourceUrl.toString());

		return resourceUrl.toString();

        System.out.println(result.createReport());

    }

    private URI fileName(){

        return URI.create("file:////BGBM-PESIHPC/Uzbekistan/" + fileName);

    }

import eu.etaxonomy.cdm.model.reference.ReferenceFactory;

/**

 * Import for Flora of Uzbekistan habitats.

 *

 * https://dev.e-taxonomy.eu/redmine/issues/9049

        System.out.println(result.createReport());

    }

    private URI fileName(){

        return URI.create("file:////BGBM-PESIHPC/Uzbekistan/" + fileName);

    }

import eu.etaxonomy.cdm.model.reference.ReferenceFactory;

/**

 * Import for Flora of Uzbekistan phenology.

 *

 * https://dev.e-taxonomy.eu/redmine/issues/9126

        System.out.println(result.createReport());

    }

    private URI fileName(){

        return URI.create("file:////BGBM-PESIHPC/Uzbekistan/" + fileName);

    }

        me.doImport(cdmDestination);

        System.exit(0);

    }

import eu.etaxonomy.cdm.strategy.parser.TimePeriodParser;

/**

 * Import for Flora of Uzbekistan taxa.

 *

 * https://dev.e-taxonomy.eu/redmine/issues/8996

        System.out.println(result.createReport());

    }

    private URI uzbekistanChecklist(){

        return URI.create("file:////BGBM-PESIHPC/Uzbekistan/" + fileName);

    }

        me.doImport(cdmDestination);

        System.exit(0);

    }

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.app.wp6.cichorieae;

import java.io.File;

import eu.etaxonomy.cdm.io.common.ImportResult;

import eu.etaxonomy.cdm.io.wp6.CommonNameImportConfigurator;

/**

 * TODO add the following to a wiki page:

 * HINT: If you are about to import into a mysql data base running under windows and if you wish to dump and restore the resulting data bas under another operation systen

 * you must set the mysql system variable lower_case_table_names = 0 in order to create data base with table compatible names.

 *

 * @author a.mueller

 */

public class CichorieaeCommonNameActivator {

	private static final Logger logger = Logger.getLogger(CichorieaeCommonNameActivator.class);

		return success;

	}

	public static void main(String[] args) {

		ICdmDataSource destination = CdmDestinations.chooseDestination(args) != null ? CdmDestinations.chooseDestination(args) : cdmDestination;

		System.out.println("Start updating caches for "+ destination.getDatabase() + "...");

		CichorieaeCommonNameActivator me = new CichorieaeCommonNameActivator();

		me.doInvoke(destination);

	}

 * The contents of this file are subject to the Mozilla Public License Version 1.1

 * See LICENSE.TXT at the top of this package for the full license terms.

 */

package eu.etaxonomy.cdm.app.wp6.palmae;

import java.io.File;

 *

 * @author a.mueller

 * @since 18.07.2011

 */

public class UseSummaryActivator {

	private static final Logger logger = Logger.getLogger(UseSummaryActivator.class);

//		} catch (URISyntaxException e) {

//			e.printStackTrace();

//		}

    }

		return result;

	}

	@Override

    protected void invokeImageImport (ImageImportState state){

		if (artist.contains(",")){

			String [] artistSplits = artist.split(",");

			artist = artistSplits[0];

		}

		try{

	protected void doCount(int count, int modCount, String pluralString){

		if ((count % modCount ) == 0 && count!= 0 ){ logger.info(pluralString + " handled: " + (count));}

	}

}

/**

* Copyright (C) 2017 EDIT

* European Distributed Institute of Taxonomy

/**

 * @author a.mueller

 * @since 21.04.2017

 */

public class BogotaChecklistImportConfigurator extends ExcelImportConfiguratorBase{

    private static final long serialVersionUID = 5988430626932820343L;

    private Reference secReference;

/**

* Copyright (C) 2017 EDIT

* European Distributed Institute of Taxonomy

/**

 * @author a.mueller

 * @since 21.04.2017

 */

public class BogotaSpecimenImportConfigurator extends ExcelImportConfiguratorBase{

    private Reference secReference;

    private boolean onlyNonCdmTaxa;

    public static BogotaSpecimenImportConfigurator NewInstance(URI source, ICdmDataSource destination) {

        return new BogotaSpecimenImportConfigurator(source, destination);

    }

    private BogotaSpecimenImportConfigurator(URI uri, ICdmDataSource destination) {

        super(uri, destination);

    }

    @Override

    public ImportStateBase getNewState() {

        return new SimpleExcelSpecimenImportState<>(this);

    }

    @Override

    protected void makeIoClassList() {

        ioClassList = new Class[]{

    public void setOnlyNonCdmTaxa(boolean onlyNonCdmTaxa) {

        this.onlyNonCdmTaxa = onlyNonCdmTaxa;

    }

/**

 * @author a.mueller

 * @since 20.06.2008

 */

public class CentralAfricaEricaceaeActivator {

	private static final Logger logger = Logger.getLogger(CentralAfricaEricaceaeActivator.class);

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.app.eflora;

import java.net.URI;

import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;

import eu.etaxonomy.cdm.io.common.events.LoggingIoObserver;

import eu.etaxonomy.cdm.io.dwca.in.DwcaDataImportConfiguratorBase.DatasetUse;

import eu.etaxonomy.cdm.io.dwca.in.DwcaImportConfigurator;

import eu.etaxonomy.cdm.model.name.NomenclaturalCode;

import eu.etaxonomy.cdm.model.reference.Reference;

import eu.etaxonomy.cdm.model.reference.ReferenceFactory;

/**

 * @author a.mueller

 * @since 03.04.2012

 */

public class CentralAfricaFernsFdacImportActivator {

	@SuppressWarnings("unused")

	private static final Logger logger = Logger.getLogger(CentralAfricaFernsFdacImportActivator.class);

	//validate

	static boolean validateRankConsistency = true;

	//taxa

	static final boolean doTaxa = true;

	static final MappingType mappingType = MappingType.InMemoryMapping;

	private void doImport(ICdmDataSource cdmDestination){

		config.setSourceReferenceTitle(sourceReferenceTitle);

		config.setUseSourceReferenceAsSec(useSourceReferenceAsSec);

		//...

		if (true){

			myImport.invoke(config);

			System.out.println("End import from ("+ source.toString() + ")...");

		}

	}

	private Reference getSourceReference(String string) {

		Reference result = ReferenceFactory.newGeneric();

		return result;

	}

	//Scratchpads test

	public static URI dwca_ferns() {

		URI sourceUrl = URI.create("file:////PESIIMPORT3/fdac/dwca/ferns.zip");

		return sourceUrl;

	}

	public static void main(String[] args) {

		CentralAfricaFernsFdacImportActivator me = new CentralAfricaFernsFdacImportActivator();

		me.doImport(cdmDestination);

	}

/**

package eu.etaxonomy.cdm.app.eflora;

import java.net.URI;

/**

 * @author a.mueller

 */

public class EfloraActivatorBase {

	private static final Logger logger = Logger.getLogger(EfloraActivatorBase.class);

	protected MarkupImportConfigurator config;

	protected CdmDefaultImport<MarkupImportConfigurator> myImport;

	protected IIoObserver observer = new LoggingIoObserver();

	protected MarkupImportConfigurator doImport(URI source, ICdmDataSource cdmDestination, CHECK check, boolean h2ForCheck){

		observerList.add(observer);

		}

		//save tree

		System.out.println("End creating automated Feature Tree");

	}

	private Map<UUID,Feature> makeUuidMap(Collection<UUID> uuids, ITermService termService){

		uuidSet.addAll(uuids);

		List<Feature> featureSet = (List)termService.find(uuidSet);

		for (Feature feature : featureSet){

			result.put(feature.getUuid(), feature);

		}

		return result;

	}

	protected void executeVolume(URI source, boolean include) {

		if (include){

			System.out.println("\nStart import from ("+ source.toString() + ") ...");

			System.out.println("End import from ("+ source.toString() + ")...");

		}

	}

/**

 * @author a.mueller

 * @since 09.06.2010

 */

public class EfloraSources {

	@SuppressWarnings("unused")

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.app.eflora;

import java.net.URI;

	static final URI fotg29 = EfloraSources.fotg_29();

	static final URI fotg30 = EfloraSources.fotg_30();

	private boolean inverseInclude = false;

	private boolean includeFotg1 = false;

	static final boolean reuseState = true;

	private boolean replaceStandardKeyTitles = true;

	private boolean useFotGCollectionTypeOnly = true;

		return lastChild;

	}

	public static void main(String[] args) {

		FloraGuianasActivator me = new FloraGuianasActivator();

		me.doImport(cdmDestination);

	}

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.app.eflora;

import java.net.URI;

	//database validation status (create, update, validate ...)

	static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;

//	static final ICdmDataSource cdmDestination = CdmDestinations.cdm_flora_malesiana_preview();

//	static final ICdmDataSource cdmDestination = CdmDestinations.cdm_flora_malesiana_production();

	static final ICdmDataSource cdmDestination = CdmDestinations.localH2();

		"Chromosomes",

	};

	private static String [] habitatEcologyList = new String[]{

		"Habitat",

		"Habitat & Ecology"

	};

	private static String [] generellDescriptionsUpToAnatomyList = new String[]{

		"Fossils",

		"Morphology and anatomy",

		"Vegetative morphology and anatomy",

	};

	private static String [] anatomySubfeatureList = new String[]{

		"Leaf anatomy",

		"Wood anatomy"

		"Phytochemistry and Chemotaxonomy",

	};

	private static String [] phytoChemoSubFeaturesList = new String[]{

		"Alkaloids",

		"Iridoid glucosides",

		"Chemotaxonomy",

	};

	private static String [] generellDescriptionsFromPhytoChemoList = new String[]{

		"Phytochemistry",

		"Taxonomy",

		"Notes"

	};

	private static String [] descriptionFeatureList = new String[]{

		"lifeform",

		"Bark",

		"figure",

		"fig",

		"figs",

	};

	public TermNode<Feature> addFeatureNodesByStringList(String[] featureStringList,

		return lastChild;

	}

	public static void main(String[] args) {

		FloraMalesianaActivator me = new FloraMalesianaActivator();

		me.doImport(cdmDestination);

		System.exit(0);

	}

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.app.eflora;

import java.net.URI;

/**

 * @author a.mueller

 * @since 20.06.2008

 */

public class FloraMalesianaActivator_OLD {

	private static final Logger logger = Logger.getLogger(FloraMalesianaActivator_OLD.class);

	static final URI fmSource13_1 = EfloraSources.fm_13_1_local();

	static final URI fmSource13_2 = EfloraSources.fm_13_2_local();

//	static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_andreasM3();

//	static final ICdmDataSource cdmDestination = CdmDestinations.cdm_flora_malesiana_preview();

//	static final ICdmDataSource cdmDestination = CdmDestinations.cdm_flora_malesiana_production();

	static final ICdmDataSource cdmDestination = CdmDestinations.localH2();

//	static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql();

	//feature tree uuid

	public static final UUID featureTreeUuid = UUID.fromString("168df0c6-6429-484c-b26f-ded1f7e44bd9");

		"figure",

		"fig",

		"figs",

	};

	public void addFeatureNodesByStringList(String[] featureStringList, TermNode<Feature> root, IInputTransformer transformer, ITermService termService){

		try {

			for (String featureString : featureStringList){

		} catch (UndefinedTransformerMethodException e) {

			logger.error("getFeatureUuid is not implemented in transformer. Features could not be added");

		}

	}

	public static void main(String[] args) {

		FloraMalesianaActivator_OLD me = new FloraMalesianaActivator_OLD();

		me.doImport(cdmDestination);

	}