1
|
/**
|
2
|
* Copyright (C) 2017 EDIT
|
3
|
* European Distributed Institute of Taxonomy
|
4
|
* http://www.e-taxonomy.eu
|
5
|
*
|
6
|
* The contents of this file are subject to the Mozilla Public License Version 1.1
|
7
|
* See LICENSE.TXT at the top of this package for the full license terms.
|
8
|
*/
|
9
|
package eu.etaxonomy.cdm.app.salvador;
|
10
|
|
11
|
import java.io.IOException;
|
12
|
import java.net.URI;
|
13
|
|
14
|
import org.apache.log4j.Logger;
|
15
|
|
16
|
import eu.etaxonomy.cdm.app.common.CdmDestinations;
|
17
|
import eu.etaxonomy.cdm.database.DbSchemaValidation;
|
18
|
import eu.etaxonomy.cdm.database.ICdmDataSource;
|
19
|
import eu.etaxonomy.cdm.database.update.CdmUpdater;
|
20
|
import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
|
21
|
import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;
|
22
|
import eu.etaxonomy.cdm.io.common.ImportResult;
|
23
|
import eu.etaxonomy.cdm.io.salvador.SalvadorSpecimenImportConfigurator;
|
24
|
import eu.etaxonomy.cdm.model.reference.Reference;
|
25
|
import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
|
26
|
|
27
|
/**
|
28
|
* @author a.mueller
|
29
|
* @date 08.07.2017
|
30
|
*
|
31
|
*/
|
32
|
public class SalvadorSpecimenActivator {
|
33
|
private static final Logger logger = Logger.getLogger(SalvadorSpecimenActivator.class);
|
34
|
|
35
|
//database validation status (create, update, validate ...)
|
36
|
static DbSchemaValidation hbm2dll = DbSchemaValidation.VALIDATE;
|
37
|
|
38
|
// static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql_test();
|
39
|
static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_salvador();
|
40
|
// static final ICdmDataSource cdmDestination = CdmDestinations.cdm_salvador_production();
|
41
|
|
42
|
//check - import
|
43
|
static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK;
|
44
|
|
45
|
protected void doImport(ICdmDataSource cdmDestination){
|
46
|
|
47
|
URI source = salvadorSpecimen();
|
48
|
|
49
|
//make Source
|
50
|
SalvadorSpecimenImportConfigurator config;
|
51
|
try {
|
52
|
config = SalvadorSpecimenImportConfigurator.NewInstance(source, cdmDestination);
|
53
|
} catch (IOException e) {
|
54
|
String message = "IO Exception when configuring import: " + e.getMessage();
|
55
|
logger.warn(message);
|
56
|
return;
|
57
|
}
|
58
|
config.setCheck(check);
|
59
|
config.setDbSchemaValidation(hbm2dll);
|
60
|
config.setTransactionLineCount(100);
|
61
|
|
62
|
String fileName = source.toString();
|
63
|
fileName = fileName.substring(fileName.lastIndexOf("/") + 1 );
|
64
|
|
65
|
String message = "Start import from ("+ fileName + ") ...";
|
66
|
System.out.println(message);
|
67
|
logger.warn(message);
|
68
|
|
69
|
config.setSourceReference(getSourceReference());
|
70
|
|
71
|
CdmDefaultImport<SalvadorSpecimenImportConfigurator> myImport
|
72
|
= new CdmDefaultImport<>();
|
73
|
|
74
|
ImportResult result = myImport.invoke(config);
|
75
|
String report = result.createReport().toString();
|
76
|
System.out.println(report);
|
77
|
System.out.println("End import from ("+ source.toString() + ")...");
|
78
|
|
79
|
}
|
80
|
|
81
|
|
82
|
//SalvadorSpecimen
|
83
|
public static URI salvadorSpecimen() {
|
84
|
return URI.create("file:////BGBM-PESIHPC/Salvador/Specimen3.csv");
|
85
|
}
|
86
|
|
87
|
|
88
|
private Reference getSourceReference() {
|
89
|
Reference result = ReferenceFactory.newDatabase();
|
90
|
result.setTitle("Specimen3.csv");
|
91
|
return result;
|
92
|
}
|
93
|
|
94
|
public void doUpdate(ICdmDataSource cdmDestination){
|
95
|
CdmUpdater updater = CdmUpdater.NewInstance();
|
96
|
updater.updateToCurrentVersion(cdmDestination, null);
|
97
|
}
|
98
|
|
99
|
/**
|
100
|
* @param args
|
101
|
*/
|
102
|
public static void main(String[] args) {
|
103
|
SalvadorSpecimenActivator me = new SalvadorSpecimenActivator();
|
104
|
me.doImport(cdmDestination);
|
105
|
// me.doUpdate(cdmDestination);
|
106
|
System.exit(0);
|
107
|
}
|
108
|
}
|