EDIT

/**

 * Copyright (C) 2007 EDIT

 * European Distributed Institute of Taxonomy

 * http://www.e-taxonomy.eu

 *

 * The contents of this file are subject to the Mozilla Public License Version 1.1

 * See LICENSE.TXT at the top of this package for the full license terms.

 */

package eu.etaxonomy.cdm.app.proibiosphere;

import java.io.File;

import java.net.URI;

import java.net.URISyntaxException;

import org.apache.log4j.Logger;

import eu.etaxonomy.cdm.app.common.CdmDestinations;

import eu.etaxonomy.cdm.database.DbSchemaValidation;

import eu.etaxonomy.cdm.database.ICdmDataSource;

import eu.etaxonomy.cdm.io.common.CdmDefaultImport;

import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;

import eu.etaxonomy.cdm.io.specimen.excel.in.SpecimenSynthesysExcelImportConfigurator;

import eu.etaxonomy.cdm.model.agent.Person;

import eu.etaxonomy.cdm.model.reference.Reference;

import eu.etaxonomy.cdm.model.reference.ReferenceFactory;

/**

 * @author PK

 * @created 19.09.2008

 */

public class SynthesysCacheActivator {

    @SuppressWarnings("unused")

    private static Logger logger = Logger.getLogger(SynthesysCacheActivator.class);

    //database validation status (create, update, validate ...)

    //    final static String xmlSource = "/home/pkelbert/workspace/proibiosphere/cdmlib-io/target/test-classes/eu/etaxonomy/cdm/io/specimen/excel/in/ExcelImportConfiguratorTest-input.xls";

    final static String xmlSource = "/home/pkelbert/Documents/Proibiosphere/ChenopodiumQuentin/dca UK records.xls";

    static final ICdmDataSource cdmDestination = CdmDestinations.proibiosphere_spiders_local();

    static DbSchemaValidation hbm2dll = DbSchemaValidation.VALIDATE;

    //    static final ICdmDataSource cdmDestination = CdmDestinations.proibiosphere_local();

    //    static DbSchemaValidation hbm2dll = DbSchemaValidation.VALIDATE;

    static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK;

    /**

     * @param args

     */

    public static void main(String[] args) {

        URI source;

        try {

            URI uri = new File(xmlSource).toURI();

            source = new URI(uri.toString());

            System.out.println(source.toString());

            System.out.println("Start import from  Excel Specimen data("+ source.toString() + ") ...");

            ICdmDataSource destination = cdmDestination;

            SpecimenSynthesysExcelImportConfigurator specimenImportConfigurator = SpecimenSynthesysExcelImportConfigurator.NewInstance(source,  destination);

            specimenImportConfigurator.setSourceSecId("specimen");

            specimenImportConfigurator.setCheck(check);

            specimenImportConfigurator.setDbSchemaValidation(hbm2dll);

            specimenImportConfigurator.setDoAutomaticParsing(true);

            specimenImportConfigurator.setReUseExistingMetadata(true);

            specimenImportConfigurator.setAskForDate(true);

            specimenImportConfigurator.setDefaultAuthor("L.");

            //  specimenImportConfigurator.setClassificationName("Chenopodium");

            specimenImportConfigurator.setReUseTaxon(true);

            Reference reference = ReferenceFactory.newGeneric();

            reference.setTitleCache("Chenopodium vulvaria observations from the Botanical Society of the British Isles", true);

            Person p = Person.NewInstance();

            p.setFirstname("Quentin");

            p.setLastname("Groom");

            p.addEmailAddress("qgroom@bsbi.co.uk");

            reference.setAuthorship(p);

            reference.setOrganization("Botanical Society of the British Isles");

            specimenImportConfigurator.setSourceReference(reference);

            specimenImportConfigurator.setTaxonReference(null);

            // invoke import

            CdmDefaultImport<SpecimenSynthesysExcelImportConfigurator> specimenImport = new CdmDefaultImport<>();

            //new Test().invoke(tcsImportConfigurator);

            specimenImport.invoke(specimenImportConfigurator);

            System.out.println("End import from SpecimenData ("+ source.toString() + ")...");

        } catch (URISyntaxException e) {

            e.printStackTrace();

        }

    }

}