Revision b2956a5e
Added by Andreas Müller about 4 years ago
| cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/out/PesiTransformer.java | ||
|---|---|---|
| 237 | 237 |
public static int Animalia_Class = 60; |
| 238 | 238 |
public static int Animalia_Subclass = 70; |
| 239 | 239 |
public static int Animalia_Infraclass = 80; |
| 240 |
public static int Animalia_Subterclass = 85; |
|
| 241 |
|
|
| 240 | 242 |
public static int Animalia_Superorder = 90; |
| 241 | 243 |
public static int Animalia_Order = 100; |
| 242 | 244 |
public static int Animalia_Suborder = 110; |
| 243 | 245 |
public static int Animalia_Infraorder = 120; |
| 244 |
public static int Animalia_Section = 121; |
|
| 245 |
public static int Animalia_Subsection = 122; |
|
| 246 |
public static int Animalia_Parvorder = 122; |
|
| 247 |
public static int Animalia_Section = 125; |
|
| 248 |
public static int Animalia_Subsection = 127; |
|
| 246 | 249 |
public static int Animalia_Superfamily = 130; |
| 247 | 250 |
public static int Animalia_Family = 140; |
| 248 | 251 |
public static int Animalia_Subfamily = 150; |
| ... | ... | |
| 260 | 263 |
// Plantae Ranks |
| 261 | 264 |
public static int Plantae_Kingdom = 10; |
| 262 | 265 |
public static int Plantae_Subkingdom = 20; |
| 263 |
public static int Plantae_Phylum = 20;
|
|
| 264 |
public static int Plantae_Subphylum = 20;
|
|
| 266 |
public static int Plantae_Infrakingdom = 25;
|
|
| 267 |
public static int Plantae_Phylum = 30; //Phylum and Division is same (#8541)
|
|
| 265 | 268 |
public static int Plantae_Division = 30; |
| 266 |
public static int Plantae_Subdivision = 40; |
|
| 269 |
public static int Plantae_Subphylum = 40; |
|
| 270 |
public static int Plantae_Subdivision = 40; |
|
| 267 | 271 |
public static int Plantae_Class = 60; |
| 268 | 272 |
public static int Plantae_Subclass = 70; |
| 269 | 273 |
public static int Plantae_Superorder = 90; |
| ... | ... | |
| 1622 | 1626 |
* @return |
| 1623 | 1627 |
*/ |
| 1624 | 1628 |
public String getCacheByRankAndKingdom(Rank rank, Integer pesiKingdomId) {
|
| 1625 |
if (rank == null){
|
|
| 1629 |
if (rank == null || pesiKingdomId == null){
|
|
| 1626 | 1630 |
return null; |
| 1627 | 1631 |
}else{
|
| 1628 |
return this.rankCacheMap.get(pesiKingdomId).get(rank2RankId(rank, pesiKingdomId)); |
|
| 1632 |
Map<Integer, String> rankMap = this.rankCacheMap.get(pesiKingdomId); |
|
| 1633 |
if (rankMap != null){
|
|
| 1634 |
return rankMap.get(rank2RankId(rank, pesiKingdomId)); |
|
| 1635 |
}else{
|
|
| 1636 |
logger.warn("RankCacheMap is null for " + pesiKingdomId);
|
|
| 1637 |
return null; |
|
| 1638 |
} |
|
| 1629 | 1639 |
} |
| 1630 | 1640 |
} |
| 1631 | 1641 |
|
| ... | ... | |
| 1681 | 1691 |
if (pesiKingdomId != null && pesiKingdomId.intValue() == KINGDOM_ANIMALIA) {
|
| 1682 | 1692 |
if (rank.equals(Rank.KINGDOM())) {
|
| 1683 | 1693 |
result = Animalia_Kingdom; |
| 1684 |
} else if (rank.equals(Rank.SUBKINGDOM())) {
|
|
| 1694 |
} else if (rank.equals(Rank.SUBKINGDOM())) {
|
|
| 1685 | 1695 |
result = Animalia_Subkingdom; |
| 1686 | 1696 |
} else if (rank.equals(Rank.SUPERPHYLUM())) {
|
| 1687 | 1697 |
result = Animalia_Superphylum; |
| ... | ... | |
| 1697 | 1707 |
result = Animalia_Class; |
| 1698 | 1708 |
} else if (rank.equals(Rank.SUBCLASS())) {
|
| 1699 | 1709 |
result = Animalia_Subclass; |
| 1700 |
} else if (rank.equals(Rank.INFRACLASS())) {
|
|
| 1710 |
} else if (rank.equals(Rank.INFRACLASS())) {
|
|
| 1701 | 1711 |
result = Animalia_Infraclass; |
| 1712 |
} else if (rank.getUuid().equals(ErmsTransformer.uuidRankSubterclass)) {
|
|
| 1713 |
result = Animalia_Subterclass; |
|
| 1702 | 1714 |
} else if (rank.equals(Rank.SUPERORDER())) {
|
| 1703 | 1715 |
result = Animalia_Superorder; |
| 1704 | 1716 |
} else if (rank.equals(Rank.ORDER())) {
|
| ... | ... | |
| 1707 | 1719 |
result = Animalia_Suborder; |
| 1708 | 1720 |
} else if (rank.equals(Rank.INFRAORDER())) {
|
| 1709 | 1721 |
result = Animalia_Infraorder; |
| 1710 |
} else if (rank.equals(Rank.SECTION_ZOOLOGY())) {
|
|
| 1722 |
} else if (rank.getUuid().equals(ErmsTransformer.uuidRankParvorder)) {
|
|
| 1723 |
result = Animalia_Parvorder; |
|
| 1724 |
} else if (rank.equals(Rank.SECTION_ZOOLOGY())) {
|
|
| 1711 | 1725 |
result = Animalia_Section; |
| 1712 | 1726 |
} else if (rank.equals(Rank.SUBSECTION_ZOOLOGY())) {
|
| 1713 | 1727 |
result = Animalia_Subsection; |
| ... | ... | |
| 1745 | 1759 |
} else if (pesiKingdomId != null && pesiKingdomId.intValue() == KINGDOM_PLANTAE) {
|
| 1746 | 1760 |
if (rank.equals(Rank.KINGDOM())) {
|
| 1747 | 1761 |
result = Plantae_Kingdom; |
| 1748 |
} else if (rank.equals(Rank.SUBKINGDOM())) {
|
|
| 1762 |
} else if (rank.equals(Rank.INFRAKINGDOM())) {
|
|
| 1763 |
result = Plantae_Infrakingdom; |
|
| 1764 |
} else if (rank.equals(Rank.SUBKINGDOM())) {
|
|
| 1749 | 1765 |
result = Plantae_Subkingdom; |
| 1750 |
}else if (rank.equals(Rank.PHYLUM())) {
|
|
| 1751 |
result = Plantae_Phylum; |
|
| 1752 |
}else if (rank.equals(Rank.SUBPHYLUM())) {
|
|
| 1753 |
result = Plantae_Subphylum; |
|
| 1754 |
}else if (rank.equals(Rank.DIVISION())) {
|
|
| 1766 |
}else if (rank.equals(Rank.PHYLUM())) { //is same as Division (#8541)
|
|
| 1767 |
result = Plantae_Phylum; |
|
| 1768 |
}else if (rank.equals(Rank.DIVISION())) {
|
|
| 1755 | 1769 |
result = Plantae_Division; |
| 1770 |
} else if (rank.equals(Rank.SUBPHYLUM())) {
|
|
| 1771 |
result = Plantae_Subphylum; |
|
| 1756 | 1772 |
} else if (rank.equals(Rank.SUBDIVISION())) {
|
| 1757 | 1773 |
result = Plantae_Subdivision; |
| 1758 | 1774 |
} else if (rank.equals(Rank.CLASS())) {
|
Also available in: Unified diff
ref #8509 add Subterclass, Parvorder and Infrakingdom, adapt number for (sub)section, make (sub)division and (sub)phylum equal and some other improvements for rank handling