Revision aea90ab7
Added by Andreas Müller almost 7 years ago
| app-import/src/main/java/eu/etaxonomy/cdm/io/greece/FloraHellenicaExcludedTaxonImport.java | ||
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import org.apache.log4j.Logger; |
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import org.springframework.stereotype.Component; |
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import org.springframework.transaction.TransactionStatus; |
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import eu.etaxonomy.cdm.io.mexico.SimpleExcelTaxonImportState; |
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import eu.etaxonomy.cdm.model.name.BotanicalName; |
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import eu.etaxonomy.cdm.model.name.IBotanicalName;
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import eu.etaxonomy.cdm.model.name.INonViralName; |
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import eu.etaxonomy.cdm.model.name.NomenclaturalCode; |
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import eu.etaxonomy.cdm.model.name.Rank; |
| ... | ... | |
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return "excluded taxa"; |
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} |
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private boolean isFirst = true; |
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private TransactionStatus tx = null; |
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/** |
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* {@inheritDoc}
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*/ |
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@Override |
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protected void firstPass(SimpleExcelTaxonImportState<CONFIG> state) {
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if (isFirst){
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tx = this.startTransaction(); |
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isFirst = false; |
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} |
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String line = state.getCurrentLine() + ": "; |
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HashMap<String, String> record = state.getOriginalRecord(); |
| ... | ... | |
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} |
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} |
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@Override |
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protected void secondPass(SimpleExcelTaxonImportState<CONFIG> state) {
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if (tx != null){
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this.commitTransaction(tx); |
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tx = null; |
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} |
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} |
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/** |
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* @param state |
| ... | ... | |
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HashMap<String, String> record, |
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String noStr) {
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TaxonNode familyTaxon = getFamilyTaxon(record, state); |
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if (familyTaxon == null){
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TaxonNode familyTaxonNode = getFamilyTaxon(record, state); |
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familyTaxonNode = getTaxonNodeService().find(familyTaxonNode.getUuid()); |
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if (familyTaxonNode == null){
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logger.warn(line + "Family not created, can't add excluded taxon: " + record.get(FAMILY)); |
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return null; |
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} |
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String taxonStr = getValue(record, TAXON); |
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INonViralName name = parser.parseFullName(taxonStr, NomenclaturalCode.ICNAFP, null); |
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name = replaceNameAuthorsAndReferences(state, name); |
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if (name.isProtectedTitleCache()){
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logger.warn(line + "Name could not be parsed: " + taxonStr); |
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} |
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Taxon taxon = Taxon.NewInstance(name, getSecReference(state)); |
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taxon.addImportSource(noStr, getWorksheetName(), getSourceCitation(state), null); |
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TaxonNode excludedNode = familyTaxon.addChildTaxon(taxon, getSecReference(state), null); |
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TaxonNode excludedNode = familyTaxonNode.addChildTaxon(taxon, getSecReference(state), null);
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excludedNode.setExcluded(true); |
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getTaxonNodeService().saveOrUpdate(excludedNode); |
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return excludedNode; |
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} |
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/** |
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* @param record |
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* @param state |
| ... | ... | |
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} |
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familyStr = familyStr.trim(); |
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Taxon family = state.getHigherTaxon(familyStr); |
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// Taxon family = state.getHigherTaxon(familyStr); |
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Taxon family = this.getHigherTaxon(record, state, FAMILY); |
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TaxonNode familyNode; |
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if (family != null){
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familyNode = family.getTaxonNodes().iterator().next(); |
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}else{
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BotanicalName name = makeFamilyName(state, familyStr); |
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IBotanicalName name = makeFamilyName(state, familyStr); |
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name = replaceNameAuthorsAndReferences(state, name); |
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Reference sec = getSecReference(state); |
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family = Taxon.NewInstance(name, sec); |
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Also available in: Unified diff
ref #6286 updates for Flora Hellenica import (including new image import)