Revision ae79d763
Added by Andreas Müller over 5 years ago
| app-import/src/main/java/eu/etaxonomy/cdm/io/phycobank/PhycobankHigherClassificationExcelImport.java | ||
|---|---|---|
| 87 | 87 |
relType = type; |
| 88 | 88 |
|
| 89 | 89 |
String line = "line " + state.getCurrentLine(); |
| 90 |
System.out.println(line); |
|
| 91 |
|
|
| 90 | 92 |
Map<String, String> record = state.getOriginalRecord(); |
| 91 | 93 |
|
| 92 | 94 |
List<RankedUninomial> rankedUninomials = makeRankedUninomials(state, record); |
| ... | ... | |
| 128 | 130 |
}else if (existingHigherNode.equals(createdHigher)){
|
| 129 | 131 |
//nothing to do; |
| 130 | 132 |
}else{
|
| 131 |
logger.warn(line + ": Inconsistency in data. Higher taxon for rank " + rankedUninomial.rank + |
|
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logger.warn(line + ": Inconsistency in data. Higher taxon for rank " + rankedUninomial.rank + "/" + rankedUninomial.uninomial +
|
|
| 132 | 134 |
" differs from existing higher taxon. Higher taxonomy not created. Please check classification."); |
| 133 | 135 |
} |
| 134 | 136 |
}else { //existingNode == null
|
| ... | ... | |
| 207 | 209 |
String fieldName, Rank rank) {
|
| 208 | 210 |
String uninomial = record.get(fieldName); |
| 209 | 211 |
if (isNotBlank(uninomial)){
|
| 210 |
list.add(new RankedUninomial(uninomial, rank)); |
|
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list.add(new RankedUninomial(uninomial.trim(), rank));
|
|
| 211 | 213 |
} |
| 212 | 214 |
} |
| 213 | 215 |
|
Also available in: Unified diff
ref #7420 latest changes to PhycobankActivator