Project

General

Profile

Download (132 KB) Statistics
| Branch: | Revision:
1
/**
2
* Copyright (C) 2009 EDIT
3
* European Distributed Institute of Taxonomy
4
* http://www.e-taxonomy.eu
5
*
6
* The contents of this file are subject to the Mozilla Public License Version 1.1
7
* See LICENSE.TXT at the top of this package for the full license terms.
8
*/
9
package eu.etaxonomy.cdm.io.pesi.out;
10

    
11
import java.sql.ResultSet;
12
import java.sql.SQLException;
13
import java.util.EnumSet;
14
import java.util.HashMap;
15
import java.util.HashSet;
16
import java.util.Map;
17
import java.util.Set;
18
import java.util.UUID;
19

    
20
import org.apache.commons.lang.StringUtils;
21
import org.apache.log4j.Logger;
22

    
23
import eu.etaxonomy.cdm.common.CdmUtils;
24
import eu.etaxonomy.cdm.io.berlinModel.BerlinModelTransformer;
25
import eu.etaxonomy.cdm.io.common.Source;
26
import eu.etaxonomy.cdm.io.common.mapping.UndefinedTransformerMethodException;
27
import eu.etaxonomy.cdm.io.common.mapping.out.ExportTransformerBase;
28
import eu.etaxonomy.cdm.io.pesi.erms.ErmsTransformer;
29
import eu.etaxonomy.cdm.io.pesi.faunaEuropaea.FaunaEuropaeaTransformer;
30
import eu.etaxonomy.cdm.io.pesi.out.PesiExportBase.PesiSource;
31
import eu.etaxonomy.cdm.model.common.CdmBase;
32
import eu.etaxonomy.cdm.model.common.Language;
33
import eu.etaxonomy.cdm.model.common.RelationshipBase;
34
import eu.etaxonomy.cdm.model.common.RelationshipTermBase;
35
import eu.etaxonomy.cdm.model.description.Feature;
36
import eu.etaxonomy.cdm.model.description.PresenceAbsenceTerm;
37
import eu.etaxonomy.cdm.model.location.Country;
38
import eu.etaxonomy.cdm.model.location.NamedArea;
39
import eu.etaxonomy.cdm.model.name.HybridRelationshipType;
40
import eu.etaxonomy.cdm.model.name.NameRelationshipType;
41
import eu.etaxonomy.cdm.model.name.NameTypeDesignationStatus;
42
import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
43
import eu.etaxonomy.cdm.model.name.NomenclaturalStatusType;
44
import eu.etaxonomy.cdm.model.name.Rank;
45
import eu.etaxonomy.cdm.model.name.TaxonName;
46
import eu.etaxonomy.cdm.model.reference.Reference;
47
import eu.etaxonomy.cdm.model.reference.ReferenceType;
48
import eu.etaxonomy.cdm.model.taxon.Synonym;
49
import eu.etaxonomy.cdm.model.taxon.SynonymType;
50
import eu.etaxonomy.cdm.model.taxon.Taxon;
51
import eu.etaxonomy.cdm.model.taxon.TaxonBase;
52
import eu.etaxonomy.cdm.model.taxon.TaxonNode;
53
import eu.etaxonomy.cdm.model.taxon.TaxonRelationship;
54
import eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType;
55

    
56
/**
57
 * @author e.-m.lee
58
 * @author a.mueller (update)
59
 * @since 16.02.2010
60
 */
61
public final class PesiTransformer extends ExportTransformerBase{
62

    
63
    private static final Logger logger = Logger.getLogger(PesiTransformer.class);
64

    
65
	public static final String AUCT_STRING = "auct.";
66

    
67
	//sourceRefUUIDs
68
	public static final UUID uuidSourceRefEuroMed = UUID.fromString("51b3900c-91e0-4cc5-94f3-577a352ca9c4");
69
	public static final UUID uuidSourceRefFaunaEuropaea = UUID.fromString("f27a5e67-d065-4b79-8d41-eabd3ae0edd0");
70
	public static final UUID uuidSourceRefErms = UUID.fromString("7744bc26-f914-42c4-b54a-dd2a030a8bb7");
71
	public static final UUID uuidSourceRefIndexFungorum = UUID.fromString("8de25d27-7d40-47f4-af3b-59d64935a843");
72
	public static final UUID uuidSourceRefAuct = UUID.fromString("5f79f96c-c100-4cd8-b78e-2b2dacf09a23");
73
	public static final UUID uuidSourceRefFaunaEuropaea_fromSql = UUID.fromString("6786d863-75d4-4796-b916-c1c3dff4cb70");
74

    
75
    public static final UUID uuidTaxonValuelessEuroMed = UUID.fromString("f0a9322b-a57e-447b-9a75-a909f2f2a994");
76

    
77
	public static final String SOURCE_STR_EM = "E+M";
78
	public static final String SOURCE_STR_FE = "FaEu";
79
	public static final String SOURCE_STR_IF = "IF";
80
	public static final String SOURCE_STR_ERMS = "ERMS";
81

    
82
	// status keys
83
	private static int QUALITY_STATUS_CHECKED_EDITOR_ERMS_1_1 = 0;
84
	private static int QUALITY_STATUS_ADD_BY_DBMT= 2;
85
	private static int QUALITY_STATUS_CHECKED_EDITOR = 3;
86
	private static int QUALITY_STATUS_EDITED_BY_DBMT = 4;
87
	private static int QUALITY_STATUS_THEMATIC_EDITOR = 5;
88

    
89
	// marker type
90
	public static final UUID uuidMarkerGuidIsMissing = UUID.fromString("24e70843-05e2-44db-954b-84df0d23ea20");
91
	public static final UUID uuidMarkerTypeHasNoLastAction = UUID.fromString("99652d5a-bc92-4251-b57d-0fec4d258ab7");
92
//	public static final UUID uuidMarkerFossil = UUID.fromString("761ce108-031a-4e07-b444-f8d757070312");
93

    
94

    
95
	//extension type uuids
96
	public static final UUID uuidExtCacheCitation = UUID.fromString("29656168-32d6-4301-9067-d57c63be5c67");
97
	//public static final UUID expertUserIdUuid = UUID.fromString("e25813d3-c67c-4585-9aa0-970fafde50b4");
98
	//public static final UUID speciesExpertUserIdUuid = UUID.fromString("6d42abd8-8894-4980-ae07-e918affd4172");
99
	public static final UUID uuidExtExpertName = BerlinModelTransformer.uuidExpertName;
100
	public static final UUID uuidExtSpeciesExpertName = BerlinModelTransformer.uuidSpeciesExpertName;
101
	public static final UUID uuidExtLastActionDate = UUID.fromString("8d0a7d81-bb83-4576-84c3-8c906ef039b2");
102
	public static final UUID uuidExtLastAction = UUID.fromString("bc20d5bc-6161-4279-9499-89ea26ce5f6a");
103
	public static final UUID uuidExtTaxComment = UUID.fromString("8041a752-0479-4626-ab1b-b266b751f816");
104
	public static final UUID uuidExtFauComment = UUID.fromString("054f773a-41c8-4ad5-83e3-981320c1c126");
105
	public static final UUID uuidExtFauExtraCodes = UUID.fromString("b8c7e77d-9869-4787-bed6-b4b302dbc5f5");
106

    
107
	// References
108
	private static int REF_ARTICLE_IN_PERIODICAL = 1;
109
	private static int REF_PART_OF_OTHER = 2;
110
	public static int REF_BOOK = 3;
111
	public static int REF_DATABASE = 4;
112
	private static int REF_INFORMAL = 5;
113
	private static int REF_NOT_APPLICABLE = 6;
114
	private static int REF_WEBSITE = 7;
115
	public static int REF_PUBLISHED_CD = 8;
116
	public static int REF_JOURNAL = 9;
117
	public static int REF_UNRESOLVED = 10;
118
	public static int REF_PUBLICATION = 11;
119
	public static String REF_STR_UNRESOLVED = "unresolved";
120

    
121
	private static int LANG_UNKNOWN = -99;
122
	private static int LANG_DUTCH = 11;
123
    private static int LANG_VALENCIAN = 65;
124
	private static int LANG_HIGH_ARAGONES = 66;
125
	private static int LANG_MAJORCAN = 67;
126

    
127

    
128
	// NameStatus
129
    public static UUID uuidNomStatusTemporaryName = UUID.fromString("aa6ada5a-ca21-4fef-b76f-9ae237e9c4ae");
130

    
131
	private static int NAME_ST_NOM_INVAL = 1;
132
	private static int NAME_ST_NOM_ILLEG = 2;
133
	private static int NAME_ST_NOM_NUD = 3;
134
	private static int NAME_ST_NOM_REJ = 4;
135
	private static int NAME_ST_NOM_REJ_PROP = 5;
136
	private static int NAME_ST_NOM_UTIQUE_REJ = 6;
137
	private static int NAME_ST_NOM_UTIQUE_REJ_PROP = 7;
138
	private static int NAME_ST_NOM_CONS = 8;
139
	private static int NAME_ST_NOM_CONS_PROP = 9;
140
	private static int NAME_ST_ORTH_CONS = 10;
141
	private static int NAME_ST_ORTH_CONS_PROP = 11;
142
	private static int NAME_ST_NOM_SUPERFL = 12;
143
	private static int NAME_ST_NOM_AMBIG = 13;
144
	private static int NAME_ST_NOM_PROVIS = 14;
145
	private static int NAME_ST_NOM_DUB = 15;
146
	private static int NAME_ST_NOM_NOV = 16;
147
	private static int NAME_ST_NOM_CONFUS = 17;
148
	private static int NAME_ST_NOM_ALTERN = 18;
149
	private static int NAME_ST_COMB_INVAL = 19;
150
	private static int NAME_ST_LEGITIMATE = 20; // PESI specific from here
151
	private static int NAME_ST_COMB_INED = 21;
152
	private static int NAME_ST_COMB_AND_STAT_INED = 22;
153
	private static int NAME_ST_NOM_AND_ORTH_CONS = 23;
154
	private static int NAME_ST_NOM_NOV_INED = 24;
155
	private static int NAME_ST_SP_NOV_INED = 25;
156
	private static int NAME_ST_ALTERNATE_REPRESENTATION = 26;
157
	private static int NAME_ST_TEMPORARY_NAME = 27;
158
	private static int NAME_ST_SPECIES_INQUIRENDA = 28;
159

    
160
	// TaxonStatus
161
	public static int T_STATUS_ACCEPTED = 1;
162
	public static int T_STATUS_SYNONYM = 2;
163
	public static int T_STATUS_PARTIAL_SYN = 3;
164
	public static int T_STATUS_PRO_PARTE_SYN = 4;
165
	public static int T_STATUS_UNRESOLVED = 5;
166
	private static int T_STATUS_ORPHANED = 6;
167
	public static int T_STATUS_UNACCEPTED = 7;
168
	private static int T_STATUS_NOT_ACCEPTED_VALUELESS = 8;
169

    
170
	// TypeDesginationStatus //	 -> not a table anymore
171
	private static int TYPE_BY_ORIGINAL_DESIGNATION = 1;
172
	private static int TYPE_BY_SUBSEQUENT_DESIGNATION = 2;
173
	private static int TYPE_BY_MONOTYPY = 3;
174
	private static String TYPE_STR_BY_ORIGINAL_DESIGNATION = "Type by original designation";
175
	private static String TYPE_STR_BY_SUBSEQUENT_DESIGNATION = "Type by subsequent designation";
176
	private static String TYPE_STR_BY_MONOTYPY = "Type by monotypy";
177

    
178
	// RelTaxonQualifier
179
	private static int IS_BASIONYM_FOR = 1;
180
	private static int IS_LATER_HOMONYM_OF = 2;
181
	private static int IS_REPLACED_SYNONYM_FOR = 3;
182
	private static int IS_VALIDATION_OF = 4;
183
	private static int IS_LATER_VALIDATION_OF = 5;
184
	private static int IS_TYPE_OF = 6;
185
	private static int IS_CONSERVED_TYPE_OF = 7;
186
	private static int IS_REJECTED_TYPE_OF = 8;
187
	private static int IS_FIRST_PARENT_OF = 9;
188
	private static int IS_SECOND_PARENT_OF = 10;
189
	private static int IS_FEMALE_PARENT_OF = 11;
190
	private static int IS_MALE_PARENT_OF = 12;
191
	private static int IS_CONSERVED_AGAINST = 13;
192
	private static int IS_REJECTED_IN_FAVOUR_OF = 14;
193
	private static int IS_TREATED_AS_LATER_HOMONYM_OF = 15;
194
	private static int IS_ORTHOGRAPHIC_VARIANT_OF = 16;
195
	private static int IS_ALTERNATIVE_NAME_FOR = 17;
196
	private static int HAS_SAME_TYPE_AS = 18;
197
	private static int IS_ORIGINAL_SPELLING_FOR = 19;
198
	private static int IS_BLOCKING_NAME_FOR = 20;
199
	private static int IS_LECTOTYPE_OF = 61;
200
	private static int TYPE_NOT_DESIGNATED = 62;
201
	public static int IS_TAXONOMICALLY_INCLUDED_IN = 101;
202
	public static int IS_SYNONYM_OF = 102;
203
	private static int IS_MISAPPLIED_NAME_FOR = 103;
204
	private static int IS_PRO_PARTE_SYNONYM_OF = 104;
205
	private static int IS_PARTIAL_SYNONYM_OF = 105;
206
	private static int IS_HETEROTYPIC_SYNONYM_OF = 106;
207
	private static int IS_HOMOTYPIC_SYNONYM_OF = 107;
208
	private static int IS_PRO_PARTE_MISAPPLIED_NAME_FOR = 108;
209
	private static int IS_PRO_PARTE_AND_HOMOTYPIC_SYNONYM_OF = 201;
210
	private static int IS_PRO_PARTE_AND_HETEROTYPIC_SYNONYM_OF = 202;
211
	private static int IS_PARTIAL_AND_HOMOTYPIC_SYNONYM_OF = 203;
212
	private static int IS_PARTIAL_AND_HETEROTYPIC_SYNONYM_OF = 204;
213
	private static int IS_INFERRED_EPITHET_FOR = 301;
214
	private static int IS_INFERRED_GENUS_FOR = 302;
215
	private static int IS_POTENTIAL_COMBINATION_FOR = 303;
216

    
217
	//namespaces
218
	public static String STR_NAMESPACE_NOMINAL_TAXON = "Nominal taxon from TAX_ID:";
219
	public static String STR_NAMESPACE_INFERRED_EPITHET = "Inferred epithet from TAX_ID:";
220
	public static String STR_NAMESPACE_INFERRED_GENUS = "Inferred genus from TAX_ID:";
221
	public static String STR_NAMESPACE_POTENTIAL_COMBINATION = "Potential combination from TAX_ID:";
222

    
223
	// Kingdoms
224
	private static final int KINGDOM_NULL = 0;
225
	private static final int KINGDOM_ANIMALIA = 2;
226
	private static final int KINGDOM_PLANTAE = 3;
227
	private static final int KINGDOM_FUNGI = 4;
228
	private static final int KINGDOM_PROTOZOA = 5;
229
	private static final int KINGDOM_BACTERIA = 6;
230
	private static final int KINGDOM_CHROMISTA = 7;
231

    
232
	// Kingdoms
233
	private static Map<String, Integer> pesiKingdomMap = new HashMap<>();
234

    
235
	//Kingdom title
236
    private static String KINGDOM_PLANTAE_STRING = "Plantae";
237
    private static String KINGDOM_FUNGI_STRING = "Fungi";
238
    private static String KINGDOM_PROTOZOA_STRING = "Protozoa";
239
    private static String kINGDOM_BACTERIA_STRING = "Bacteria";
240
    private static String KINGDOM_CHROMISTA_STRING = "Chromista";
241

    
242
	//ranks of all kingdoms
243
    private static int Kingdom = 10;
244
    private static int Subkingdom = 20;
245
    private static int Phylum = 30;  //Phylum and Division is same (#8541) according to ICNAFP
246
    private static int Division = 30;
247
    private static int Subphylum = 40;  //See above comment
248
    private static int Subdivision = 40;
249
    private static int Class = 60;
250
    private static int Subclass = 70;
251
    private static int Order = 100;
252
    private static int Suborder = 110;
253
    private static int Family = 140;
254
    private static int Subfamily = 150;
255
    private static int Tribe = 160;
256
    private static int Subtribe = 170;
257
    private static int Genus = 180;
258
    private static int Subgenus = 190;
259
    private static int Species =220;
260
    private static int Subspecies = 230;
261
    private static int Variety = 240;
262
    private static int Forma = 260;
263

    
264
    //ranks of some kingdoms
265
    private static int Infrakingdom = 25; //2,3,5,7
266
    private static int Infraphylum = 45;  //2,7
267
    private static int Superclass = 50;   //2,5,6,7
268
    private static int Infraclass = 80;   //2,5,6,7
269
    private static int Superorder = 90;   //2,3,5,6,7
270
    private static int Infraorder = 120;  //2,5,6,7
271
    private static int Superfamily = 130; //2,5,6,7
272
    private static int Bot_Section = 200;    //3,4,7
273
    private static int Bot_Subsection = 210; //3,4,7
274
    private static int Subvariety = 250;     //2,3,4,7
275
    private static int Subform = 270;        //2,3,4
276
    private static int Forma_spec = 275;     //3,4,5,7
277

    
278
    // Animalia Ranks
279
	private static int Superphylum = 28;
280
	private static int Subterclass = 85;
281
	private static int Parvorder = 122;
282
	private static int Animalia_Section = 125;
283
	private static int Animalia_Subsection = 127;
284
	private static int Natio = 235;
285

    
286
	// Plantae Ranks
287
	private static int Series = 212;
288
	private static int Subseries	= 214;
289
	private static int Aggregate	= 216;
290
	private static int Coll_Species = 218;
291
	private static int Grex = 225;
292
	private static int Proles = 232;
293
	private static int Race = 234;
294
	private static int Convarietas = 236;
295
	private static int Taxa_infragen = 280;
296
	private static int Taxa_infraspec = 285;
297

    
298
	//NoteCategory
299
	private static int NoteCategory_description = 1;
300
	public static int NoteCategory_ecology = 4;
301
	private static int NoteCategory_phenology	= 5;
302
	private static int NoteCategory_general_distribution_euromed = 10;
303
	private static int NoteCategory_general_distribution_world = 11;
304
	private static int NoteCategory_Common_names = 12;
305
	private static int NoteCategory_Occurrence = 13;
306
	private static int NoteCategory_Maps =14;
307
	private static int NoteCategory_Link_to_maps = 20;
308
	private static int NoteCategory_Link_to_images = 21;
309
	public static int NoteCategory_Link_to_taxonomy = 22;
310
	public static int NoteCategory_Link_to_general_information = 23;
311
	public static int NoteCategory_undefined_link = 24;
312
	private static int NoteCategory_Editor_Braces = 249;
313
	private static int NoteCategory_Editor_Brackets = 250;
314
	private static int NoteCategory_Editor_Parenthesis = 251;
315
	private static int NoteCategory_Inedited = 252;
316
	private static int NoteCategory_Comments_on_editing_process = 253;
317
	private static int NoteCategory_Publication_date = 254;
318
	private static int NoteCategory_Morphology = 255;
319
	private static int NoteCategory_Acknowledgments = 257;
320
	private static int NoteCategory_Original_publication = 258;
321
	private static int NoteCategory_Type_locality	= 259;
322
	private static int NoteCategory_Environment = 260;
323
	private static int NoteCategory_Spelling = 261;
324
	private static int NoteCategory_Systematics = 262;
325
	private static int NoteCategory_Remark = 263;
326
	private static int NoteCategory_Additional_information = 266;
327
	private static int NoteCategory_Status = 267;
328
	private static int NoteCategory_Nomenclature = 268;
329
	private static int NoteCategory_Homonymy = 269;
330
	private static int NoteCategory_Taxonomy = 270;
331
	private static int NoteCategory_Taxonomic_status = 272;
332
	private static int NoteCategory_Authority	= 273;
333
	private static int NoteCategory_Identification = 274;
334
	private static int NoteCategory_Validity = 275;
335
	private static int NoteCategory_Classification = 276;
336
	private static int NoteCategory_Distribution = 278;
337
	private static int NoteCategory_Synonymy = 279;
338
	private static int NoteCategory_Habitat = 280;
339
	private static int NoteCategory_Biology = 281;
340
	private static int NoteCategory_Diagnosis	= 282;
341
	private static int NoteCategory_Host = 283;
342
	private static int NoteCategory_Note = 284;
343
	private static int NoteCategory_Rank = 285;
344
	private static int NoteCategory_Taxonomic_Remark = 286;
345
	private static int NoteCategory_Taxonomic_Remarks = 287;
346
	private static int NoteCategory_Etymology = 288;
347
    private static int NoteCategory_Type_species = 289;
348
	private static int NoteCategory_Depth_Range = 290;
349
	private static int NoteCategory_Grammatical_Gender = 291;
350
	private static int NoteCategory_Introduced_Species_Remark = 292;
351
	private static int NoteCategory_Alien_Species = 293;
352
	private static int NoteCategory_Dimensions = 294;
353
    private static int NoteCategory_New_Combination = 295;
354
    private static int NoteCategory_Original_Combination = 296;
355

    
356
	private static int NoteCategory_Conservation_Status= 301;
357
	private static int NoteCategory_Use = 302;
358
	private static int NoteCategory_Comments = 303;
359
    private static int NoteCategory_Diet = 304;
360
    private static int NoteCategory_Fossil_Range = 305;
361
    private static int NoteCategory_Original_Description = 306;
362
    private static int NoteCategory_Reproduction = 307;
363
    private static int NoteCategory_Specimen = 308;
364
    private static int NoteCategory_Type_Specimen = 309;
365
    private static int NoteCategory_Type_Material = 310;
366
    private static int NoteCategory_Editors_Comment = 311;
367
    private static int NoteCategory_Syntype = 312;
368

    
369
	// FossilStatus
370
	private static int FOSSILSTATUS_RECENT_ONLY = 1;
371
	private static int FOSSILSTATUS_FOSSIL_ONLY = 2;
372
	private static int FOSSILSTATUS_RECENT_FOSSIL = 3;
373
	public static String STR_FOSSIL_ONLY = "fossil only";  //still used for Index Fungorum
374

    
375
	// SourceUse
376
	private static int ORIGINAL_DESCRIPTION = 1;
377
	private static int BASIS_OF_RECORD = 2;
378
	private static int ADDITIONAL_SOURCE = 3;
379
	private static int SOURCE_OF_SYNONYMY = 4;
380
	private static int REDESCRIPTION = 5;
381
	private static int NEW_COMBINATION_REFERENCE = 6;
382
	private static int STATUS_SOURCE = 7;
383
	public static int NOMENCLATURAL_REFERENCE = 8;
384
	public static String STR_NOMENCLATURAL_REFERENCE = "nomenclatural reference";
385

    
386
	// Area
387
	private static int AREA_EAST_AEGEAN_ISLANDS = 1;
388
	private static int AREA_GREEK_EAST_AEGEAN_ISLANDS = 2;
389
	private static int AREA_TURKISH_EAST_AEGEAN_ISLANDS = 3;
390
	private static int AREA_ALBANIA = 4;
391
	private static int AREA_AUSTRIA_WITH_LIECHTENSTEIN = 5;
392
	private static int AREA_AUSTRIA = 6;
393
	private static int AREA_LIECHTENSTEIN = 7;
394
	private static int AREA_AZORES = 8;
395
	private static int AREA_CORVO = 9;
396
	private static int AREA_FAIAL = 10;
397
	private static int AREA_GRACIOSA = 11;
398
	private static int AREA_SAO_JORGE = 12;
399
	private static int AREA_FLORES = 13;
400
	private static int AREA_SAO_MIGUEL = 14;
401
	private static int AREA_PICO = 15;
402
	private static int AREA_SANTA_MARIA = 16;
403
	private static int AREA_TERCEIRA = 17;
404
	private static int AREA_BELGIUM_WITH_LUXEMBOURG = 18;
405
	private static int AREA_BELGIUM = 19;
406
	private static int AREA_LUXEMBOURG = 20;
407
	private static int AREA_BOSNIA_HERZEGOVINA = 21;
408
	private static int AREA_BALEARES = 22;
409
	private static int AREA_IBIZA_WITH_FORMENTERA = 23;
410
	private static int AREA_MALLORCA = 24;
411
	private static int AREA_MENORCA = 25;
412
	private static int AREA_GREAT_BRITAIN = 26;
413
	private static int AREA_BALTIC_STATES_ESTONIA_LATVIA_LITHUANIA_AND_KALININGRAD_REGION = 27;
414
	private static int AREA_BULGARIA = 28;
415
	private static int AREA_BELARUS = 29;
416
	private static int AREA_CANARY_ISLANDS = 30;
417
	private static int AREA_GRAN_CANARIA = 31;
418
	private static int AREA_FUERTEVENTURA_WITH_LOBOS = 32;
419
	private static int AREA_GOMERA = 33;
420
	private static int AREA_HIERRO = 34;
421
	private static int AREA_LANZAROTE_WITH_GRACIOSA = 35;
422
	private static int AREA_LA_PALMA = 36;
423
	private static int AREA_TENERIFE = 37;
424
	private static int AREA_MONTENEGRO = 38;
425
	private static int AREA_CORSE = 39;
426
	private static int AREA_CRETE_WITH_KARPATHOS_KASOS_AND_GAVDHOS = 40;
427
	private static int AREA_CZECH_REPUBLIC = 41;
428
	private static int AREA_CROATIA = 42;
429
	private static int AREA_CYPRUS = 43;
430
	private static int AREA_FORMER_CZECHOSLOVAKIA = 44;
431
	private static int AREA_DENMARK_WITH_BORNHOLM = 45;
432
	private static int AREA_ESTONIA = 46;
433
	private static int AREA_FAROE_ISLANDS = 47;
434
	private static int AREA_FINLAND_WITH_AHVENANMAA = 48;
435
	private static int AREA_FRANCE = 49;
436
	private static int AREA_CHANNEL_ISLANDS = 50;
437
	private static int AREA_FRENCH_MAINLAND = 51;
438
	private static int AREA_MONACO = 52;
439
	private static int AREA_GERMANY = 53;
440
	private static int AREA_GREECE_WITH_CYCLADES_AND_MORE_ISLANDS = 54;
441
	private static int AREA_IRELAND = 55;
442
	private static int AREA_REPUBLIC_OF_IRELAND = 56;
443
	private static int AREA_NORTHERN_IRELAND = 57;
444
	private static int AREA_SWITZERLAND = 58;
445
	private static int AREA_NETHERLANDS = 59;
446
	private static int AREA_SPAIN = 60;
447
	private static int AREA_ANDORRA = 61;
448
	private static int AREA_GIBRALTAR = 62;
449
	private static int AREA_KINGDOM_OF_SPAIN = 63;
450
	private static int AREA_HUNGARY = 64;
451
	private static int AREA_ICELAND = 65;
452
	private static int AREA_ITALY = 66;
453
	private static int AREA_ITALIAN_MAINLAND = 67;
454
	private static int AREA_SAN_MARINO = 68;
455
	private static int AREA_FORMER_JUGOSLAVIA = 69;
456
	private static int AREA_LATVIA = 70;
457
	private static int AREA_LITHUANIA = 71;
458
	private static int AREA_PORTUGUESE_MAINLAND = 72;
459
	private static int AREA_MADEIRA_ARCHIPELAGO = 73;
460
	private static int AREA_DESERTAS = 74;
461
	private static int AREA_MADEIRA = 75;
462
	private static int AREA_PORTO_SANTO = 76;
463
	private static int AREA_THE_FORMER_JUGOSLAV_REPUBLIC_OF_MAKEDONIJA = 77;
464
	private static int AREA_MOLDOVA = 78;
465
	private static int AREA_NORWEGIAN_MAINLAND = 79;
466
	private static int AREA_POLAND = 80;
467
	private static int AREA_THE_RUSSIAN_FEDERATION = 81;
468
	private static int AREA_NOVAYA_ZEMLYA_AND_FRANZ_JOSEPH_LAND = 82;
469
	private static int AREA_CENTRAL_EUROPEAN_RUSSIA = 83;
470
	private static int AREA_EASTERN_EUROPEAN_RUSSIA = 84;
471
	private static int AREA_KALININGRAD = 85;
472
	private static int AREA_NORTHERN_EUROPEAN_RUSSIA = 86;
473
	private static int AREA_NORTHWEST_EUROPEAN_RUSSIA = 87;
474
	private static int AREA_SOUTH_EUROPEAN_RUSSIA = 88;
475
	private static int AREA_ROMANIA = 89;
476
	private static int AREA_FORMER_USSR = 90;
477
	private static int AREA_RUSSIA_BALTIC = 91;
478
	private static int AREA_RUSSIA_CENTRAL = 92;
479
	private static int AREA_RUSSIA_SOUTHEAST = 93;
480
	private static int AREA_RUSSIA_NORTHERN = 94;
481
	private static int AREA_RUSSIA_SOUTHWEST = 95;
482
	private static int AREA_SARDEGNA = 96;
483
	private static int AREA_SVALBARD_WITH_BJORNOYA_AND_JAN_MAYEN = 97;
484
	private static int AREA_SELVAGENS_ISLANDS = 98;
485
	private static int AREA_SICILY_WITH_MALTA = 99;
486
	private static int AREA_MALTA = 100;
487
	private static int AREA_SICILY = 101;
488
	private static int AREA_SLOVAKIA = 102;
489
	private static int AREA_SLOVENIA = 103;
490
	private static int AREA_SERBIA_WITH_MONTENEGRO = 104;
491
	private static int AREA_SERBIA_INCLUDING_VOJVODINA_AND_WITH_KOSOVO = 105;
492
	private static int AREA_SWEDEN = 106;
493
	private static int AREA_EUROPEAN_TURKEY = 107;
494
	private static int AREA_UKRAINE_INCLUDING_CRIMEA = 108;
495
	private static int AREA_CRIMEA = 109;
496
	private static int AREA_UKRAINE = 110;
497
	private static int AREA_GREEK_MAINLAND = 111;
498
	private static int AREA_CRETE = 112;
499
	private static int AREA_DODECANESE_ISLANDS = 113;
500
	private static int AREA_CYCLADES_ISLANDS = 114;
501
	private static int AREA_NORTH_AEGEAN_ISLANDS = 115;
502
	private static int AREA_VATICAN_CITY = 116;
503
	private static int AREA_FRANZ_JOSEF_LAND = 117;
504
	private static int AREA_NOVAYA_ZEMLYA = 118;
505
	private static int AREA_AZERBAIJAN_INCLUDING_NAKHICHEVAN = 119;
506
	private static int AREA_AZERBAIJAN = 120;
507
	private static int AREA_NAKHICHEVAN = 121;
508
	private static int AREA_ALGERIA = 122;
509
	private static int AREA_ARMENIA = 123;
510
	private static int AREA_CAUCASUS_REGION = 124;
511
	private static int AREA_EGYPT = 125;
512
	private static int AREA_GEORGIA = 126;
513
	private static int AREA_ISRAEL_JORDAN = 127;
514
	private static int AREA_ISRAEL = 128;
515
	private static int AREA_JORDAN = 129;
516
	private static int AREA_LEBANON = 130;
517
	private static int AREA_LIBYA = 131;
518
	private static int AREA_LEBANON_SYRIA = 132;
519
	private static int AREA_MOROCCO = 133;
520
	private static int AREA_NORTH_CAUCASUS = 134;
521
	private static int AREA_SINAI = 135;
522
	private static int AREA_SYRIA = 136;
523
	private static int AREA_TUNISIA = 137;
524
	private static int AREA_ASIATIC_TURKEY = 138;
525
	private static int AREA_TURKEY = 139;
526
	private static int AREA_NORTHERN_AFRICA = 140;
527
	private static int AREA_AFRO_TROPICAL_REGION = 141;
528
	private static int AREA_AUSTRALIAN_REGION = 142;
529
	private static int AREA_EAST_PALAEARCTIC = 143;
530
	private static int AREA_NEARCTIC_REGION = 144;
531
	private static int AREA_NEOTROPICAL_REGION = 145;
532
	private static int AREA_NEAR_EAST = 146;
533
	private static int AREA_ORIENTAL_REGION = 147;
534
	private static int AREA_EUROPEAN_MARINE_WATERS = 148;
535
	private static int AREA_MEDITERRANEAN_SEA = 149;
536
	private static int AREA_WHITE_SEA = 150;
537
	private static int AREA_NORTH_SEA = 151;
538
	private static int AREA_BALTIC_SEA = 152;
539
	private static int AREA_BLACK_SEA = 153;
540
	private static int AREA_BARENTSZ_SEA = 154;
541
	private static int AREA_CASPIAN_SEA = 155;
542
	private static int AREA_PORTUGUESE_EXCLUSIVE_ECONOMIC_ZONE = 156;
543
	private static int AREA_BELGIAN_EXCLUSIVE_ECONOMIC_ZONE = 157;
544
	private static int AREA_FRENCH_EXCLUSIVE_ECONOMIC_ZONE = 158;
545
	private static int AREA_ENGLISH_CHANNEL = 159;
546
	private static int AREA_ADRIATIC_SEA = 160;
547
	private static int AREA_BISCAY_BAY = 161;
548
	private static int AREA_DUTCH_EXCLUSIVE_ECONOMIC_ZONE = 162;
549
	private static int AREA_UNITED_KINGDOM_EXCLUSIVE_ECONOMIC_ZONE = 163;
550
	private static int AREA_SPANISH_EXCLUSIVE_ECONOMIC_ZONE = 164;
551
	private static int AREA_EGYPTIAN_EXCLUSIVE_ECONOMIC_ZONE = 165;
552
	private static int AREA_GREEK_EXCLUSIVE_ECONOMIC_ZONE = 166;
553
	private static int AREA_TIRRENO_SEA = 167;
554
	private static int AREA_ICELANDIC_EXCLUSIVE_ECONOMIC_ZONE = 168;
555
	private static int AREA_IRISH_EXCLUSIVE_ECONOMIC_ZONE = 169;
556
	private static int AREA_IRISH_SEA = 170;
557
	private static int AREA_ITALIAN_EXCLUSIVE_ECONOMIC_ZONE = 171;
558
	private static int AREA_NORWEGIAN_SEA = 172;
559
	private static int AREA_MOROCCAN_EXCLUSIVE_ECONOMIC_ZONE = 173;
560
	private static int AREA_NORWEGIAN_EXCLUSIVE_ECONOMIC_ZONE = 174;
561
	private static int AREA_SKAGERRAK = 175;
562
	private static int AREA_TUNISIAN_EXCLUSIVE_ECONOMIC_ZONE = 176;
563
	private static int AREA_WADDEN_SEA = 177;
564
	private static int AREA_BELT_SEA = 178;
565
	private static int AREA_MARMARA_SEA = 179;
566
	private static int AREA_SEA_OF_AZOV = 180;
567
	private static int AREA_AEGEAN_SEA = 181;
568
	private static int AREA_BULGARIAN_EXCLUSIVE_ECONOMIC_ZONE = 182;
569
	private static int AREA_SOUTH_BALTIC_PROPER = 183;
570
	private static int AREA_BALTIC_PROPER = 184;
571
	private static int AREA_NORTH_BALTIC_PROPER = 185;
572
	private static int AREA_ARCHIPELAGO_SEA = 186;
573
	private static int AREA_BOTHNIAN_SEA = 187;
574
	private static int AREA_GERMAN_EXCLUSIVE_ECONOMIC_ZONE = 188;
575
	private static int AREA_SWEDISH_EXCLUSIVE_ECONOMIC_ZONE = 189;
576
	private static int AREA_UKRAINIAN_EXCLUSIVE_ECONOMIC_ZONE = 190;
577
	private static int AREA_MADEIRAN_EXCLUSIVE_ECONOMIC_ZONE = 191;
578
	private static int AREA_LEBANESE_EXCLUSIVE_ECONOMIC_ZONE = 192;
579
	private static int AREA_SPANISH_EXCLUSIVE_ECONOMIC_ZONE_MEDITERRANEAN_PART = 193;
580
	private static int AREA_ESTONIAN_EXCLUSIVE_ECONOMIC_ZONE = 194;
581
	private static int AREA_CROATIAN_EXCLUSIVE_ECONOMIC_ZONE = 195;
582
	private static int AREA_BALEAR_SEA = 196;
583
	private static int AREA_TURKISH_EXCLUSIVE_ECONOMIC_ZONE = 197;
584
	private static int AREA_DANISH_EXCLUSIVE_ECONOMIC_ZONE = 198;
585
	private static int AREA_TRANSCAUCASUS = 199;
586

    
587
	private static int AREA_GEORGIA_G = 200;
588
	private static int AREA_ABKHAZIA = 201;
589
	private static int AREA_ADZARIA = 202;
590

    
591
	private static int AREA_UNITED_KINGDOM = 203;
592
	private static int AREA_DENMARK_COUNTRY = 204;
593
	private static int AREA_TURKEY_COUNTRY = 205;
594
	private static int AREA_SPAIN_COUNTRY = 206;
595
	private static int AREA_GREECE_COUNTRY = 207;
596
	private static int AREA_PORTUGAL_COUNTRY = 208;
597
	//continued ERMS areas without variables
598
	//...
599
	private static int AREA_WALES = 293;
600

    
601
	//new E+M areas
602
	private static int AREA_SERBIA = 294;
603
	private static int AREA_KOSOVO = 295;
604

    
605
	//FauEu area UUIDs
606
    private static UUID uuidAreaAD = UUID.fromString("38dd31d2-8275-4b05-8b85-eb71a390d67f");
607
    private static UUID uuidAreaAFR = UUID.fromString("c3123386-51a4-42a4-9ff4-b3905b18a83c");//x
608
    private static UUID uuidAreaAL = UUID.fromString("84c54f15-fc90-44bb-a45d-26b7daa26ceb");
609
    private static UUID uuidAreaAT = UUID.fromString("d285e4a5-d027-4610-a4ff-f5e6dd16cdc3");
610
    private static UUID uuidAreaAUS = UUID.fromString("930e6455-de5e-4002-bfc3-45eecd07e4f3");//x
611
    private static UUID uuidAreaBA = UUID.fromString("946a06ea-200f-409e-bb2f-05e64e55ed41");
612
    private static UUID uuidAreaBE = UUID.fromString("f914f7fd-d5a3-4165-8409-004f197ae4e9");
613
    private static UUID uuidAreaBG = UUID.fromString("9586daca-a739-4d28-836e-6d15861375e1");
614
    private static UUID uuidAreaBY = UUID.fromString("b6f94a56-990d-41da-8e92-abf757afeca1");
615
    private static UUID uuidAreaCH = UUID.fromString("cccc1da5-6a0e-47c2-900e-e274fd593ff0");
616
    private static UUID uuidAreaCY = UUID.fromString("78950366-3f15-48bb-80c9-8b24afedcd3c");
617
    private static UUID uuidAreaCZ = UUID.fromString("d1221dbc-a7c5-4805-b7c8-15ae56557825");
618
    private static UUID uuidAreaDE = UUID.fromString("6f31223e-9a10-4c97-b482-85d96f195a23");
619
    private static UUID uuidAreaDK_DEN = UUID.fromString("4ed51fa9-f89a-47c8-a9ce-43d462f74c53");
620
    private static UUID uuidAreaDK_FOR = UUID.fromString("272874cf-b6f7-4805-8a0c-1a0efbbf0a21");
621
    private static UUID uuidAreaEE = UUID.fromString("1472705d-c94e-41e8-9482-adb46f201f71");
622
    private static UUID uuidAreaEPA = UUID.fromString("2f162235-6c5a-4ad4-8ba0-8dca28826dab");//x
623
    private static UUID uuidAreaES_BAL = UUID.fromString("d5466ee2-38fa-47e8-8109-008b71a2f47b");
624
    private static UUID uuidAreaES_CNY = UUID.fromString("1f19cdaa-af1e-406c-bb58-25f17ee00228");
625
    private static UUID uuidAreaES_SPA = UUID.fromString("d3cc7b05-b506-44b7-a49a-77d36974bd5f");
626
    private static UUID uuidAreaFI = UUID.fromString("93d6e2ba-308b-4d57-851c-94583e139806");
627
    private static UUID uuidAreaFR_COR = UUID.fromString("f7088b27-805f-46df-916f-eeed47a2e336");
628
    private static UUID uuidAreaFR_FRA = UUID.fromString("83d2df98-c0b4-4ad8-9a02-7cdfcfa74371");
629
    private static UUID uuidAreaGB_CI = UUID.fromString("a97807d0-e7e2-4ee0-8567-07f3a72d91bb");
630
    private static UUID uuidAreaGB_GI = UUID.fromString("4441b42a-7c9f-4a39-89d6-5c9c9dab9c05");
631
    private static UUID uuidAreaGB_GRB = UUID.fromString("94561875-19a6-4bf4-ade7-340c245ffd67");
632
    private static UUID uuidAreaGB_NI = UUID.fromString("791be300-6e86-4253-b1ba-aef46ea6bfb9");
633
    private static UUID uuidAreaGR_AEG = UUID.fromString("efb2f01a-f01e-4da2-ba02-464b0e1687e5");//x
634
    private static UUID uuidAreaGR_CYC = UUID.fromString("f9ad21b1-c9ed-4062-9086-cba6e6ef353b");//x
635
    private static UUID uuidAreaGR_DOD = UUID.fromString("7a84feae-9d93-4408-8122-e82b9485fc0f");//x
636
    private static UUID uuidAreaGR_GRC = UUID.fromString("a392dbac-8671-40e6-95c7-a0d2db8f7d9c");//x
637
    private static UUID uuidAreaGR_KRI = UUID.fromString("ed8e7bcd-2267-4953-b422-bc2ff45238f7");//x
638
    private static UUID uuidAreaHR = UUID.fromString("83323e5b-8a62-4784-956a-5f21ddc853b9");
639
    private static UUID uuidAreaHU = UUID.fromString("ab6985e7-e718-4bcb-bc84-55e563870998");
640
    private static UUID uuidAreaIE = UUID.fromString("6a623016-2cd7-4391-8bc9-ae8af50060b4");
641
    private static UUID uuidAreaIS = UUID.fromString("b8469350-7c87-4202-9cb1-5f0ad11ec89c");
642
    private static UUID uuidAreaIT_ITA = UUID.fromString("43df04d6-90b4-4cf4-8dfc-f60ae921f92c");
643
    private static UUID uuidAreaIT_SAR = UUID.fromString("f68d9695-238d-4684-901a-f4bbc24813ee");
644
    private static UUID uuidAreaIT_SI = UUID.fromString("1889a571-d12a-48f1-a49f-112e60c699ef");
645
    private static UUID uuidAreaLI = UUID.fromString("ebad24b5-559e-46c4-8b0d-87107e05169e");
646
    private static UUID uuidAreaLT = UUID.fromString("d00df2a8-8d5d-4c36-b3a2-4afc9006be70");
647
    private static UUID uuidAreaLU = UUID.fromString("65bbbb63-3351-4fda-a8f8-50557bc34e0d");
648
    private static UUID uuidAreaLV = UUID.fromString("997d97ea-4678-4e01-9a81-518c09da7d7c");
649
    private static UUID uuidAreaMC = UUID.fromString("0debabad-e7e2-4aad-b959-876d3d85a4b1");
650
    private static UUID uuidAreaMD = UUID.fromString("7a4ffe59-f8d6-4a58-bb4e-449fbe8420b3");
651
    private static UUID uuidAreaMK = UUID.fromString("40140714-6214-4338-bc45-f85455f7eaed");
652
    private static UUID uuidAreaMT = UUID.fromString("b36c2f47-47d5-497f-9235-2faf0d9a6e6c");
653
    private static UUID uuidAreaNAF = UUID.fromString("e3b2193d-e23a-47a7-9bf5-7f7eebe61afb");//x
654
    private static UUID uuidAreaNEA = UUID.fromString("d6082e94-7289-45a3-a298-5cb730cfbd7f");//x
655
    private static UUID uuidAreaNEO = UUID.fromString("7a530ae7-d070-49aa-8496-7b06c4ed735b");//x
656
    private static UUID uuidAreaNL = UUID.fromString("7b74033f-ada3-4956-87b7-ec9bf0cb4c76");
657
    private static UUID uuidAreaNO_NOR = UUID.fromString("11b26fc9-3da4-4323-8b03-e960e8b1c914");
658
    private static UUID uuidAreaNO_SVA = UUID.fromString("9a3fe056-2011-4b02-a416-59de00eaf533");
659
    private static UUID uuidAreaNRE = UUID.fromString("5e005e59-b313-4c5b-8702-c2f88317db25");//x
660
    private static UUID uuidAreaORR = UUID.fromString("2047d0dd-12dc-4454-8344-07ad52fa0af0");//x
661
    private static UUID uuidAreaPL = UUID.fromString("68edc557-dbed-494e-9549-6746f11fb904");
662
    private static UUID uuidAreaPT_AZO = UUID.fromString("6f5e4eb5-83c8-4baf-99f2-cb6e25d8ac9d");
663
    private static UUID uuidAreaPT_MDR = UUID.fromString("97bed937-f4ad-4b42-ba0c-8832816fa234");
664
    private static UUID uuidAreaPT_POR = UUID.fromString("09107b85-2bdb-4534-a51c-8d02cdd71590");
665
    private static UUID uuidAreaPT_SEL = UUID.fromString("e067287c-50c6-4e54-9859-91aa15aa289a");
666
    private static UUID uuidAreaRO = UUID.fromString("de3e2ca8-d2ea-4c1f-8a19-a7a0b5daf39d");
667
    private static UUID uuidAreaRU_FJL = UUID.fromString("2b79434b-df7d-4dc5-996f-1ca4227f6e0e");//x
668
    private static UUID uuidAreaRU_KGD = UUID.fromString("227a661b-91de-489c-88ed-6b72f78481f0");
669
    private static UUID uuidAreaRU_NOZ = UUID.fromString("2b26f68a-fdac-41ab-bce0-105b24d7eb26");//x
670
    private static UUID uuidAreaRU_RUC = UUID.fromString("235748eb-9eef-48a8-9b9a-c4abd00b6244");
671
    private static UUID uuidAreaRU_RUE = UUID.fromString("5ad5b07e-518f-44ee-ac96-c7608d93e757");
672
    private static UUID uuidAreaRU_RUN = UUID.fromString("05d35653-9f67-442c-8d99-4a7ae68cf5d1");
673
    private static UUID uuidAreaRU_RUS = UUID.fromString("98b00cf8-7bd6-4f44-885c-0927bbc1d456");
674
    private static UUID uuidAreaRU_RUW = UUID.fromString("ae84bc08-957a-4c62-a828-1fb3fc2f0c3e");
675
    private static UUID uuidAreaSE = UUID.fromString("8ff37027-4832-4ce1-9f25-e21eaf26299c");
676
    private static UUID uuidAreaSI = UUID.fromString("0b76b448-5564-415c-bc18-727c37e62bf1");
677
    private static UUID uuidAreaSK = UUID.fromString("e966cd7c-3e68-4153-887b-54920eb6eb47");
678
    private static UUID uuidAreaSM = UUID.fromString("c40b8a71-c50c-4636-96de-be0bb48ed025");
679
    private static UUID uuidAreaTR_TUE = UUID.fromString("807317b3-746b-4916-9441-d8086d0d1cb1");
680
    private static UUID uuidAreaUA = UUID.fromString("2f80440d-cb03-499c-a829-c4ac4c6608d3");//x
681
    private static UUID uuidAreaVA = UUID.fromString("cd256143-1b74-4a7d-998f-ba0a9c01bb3e");
682
    private static UUID uuidAreaYU = UUID.fromString("cd80a852-1993-465a-b0e3-8c73218d4d90");
683

    
684

    
685
	// OccurrenceStatus
686
	private static int STATUS_PRESENT = 1;
687
	public static int STATUS_ABSENT = 2;
688
	public static int STATUS_NATIVE = 3;
689
	public static int STATUS_INTRODUCED = 4;
690
	public static int STATUS_NATURALISED = 5;
691
	private static int STATUS_INVASIVE = 6;
692
	public static int STATUS_MANAGED = 7;
693
	public static int STATUS_DOUBTFUL = 8;
694

    
695
	private final Map<String, Integer> tdwgKeyMap = new HashMap<>();
696
	private final Map<Integer, String> areaCacheMap = new HashMap<>();
697
	private final Map<Integer, String> languageCacheMap  = new HashMap<>();
698
	private static final Map<String,Integer> languageCodeToKeyMap = new HashMap<>();
699

    
700
	private final Map<Integer, String> featureCacheMap  = new HashMap<>();
701
	private final Map<Integer, String> nameStatusCacheMap  = new HashMap<>();
702
	private final Map<Integer, String> qualityStatusCacheMap  = new HashMap<>();
703
	private final Map<Integer, String> taxonStatusCacheMap  = new HashMap<>();
704
	private final Map<Integer, String> taxRelQualifierCacheMap  = new HashMap<>();
705
	private final Map<Integer, String> taxRelZooQualifierCacheMap  = new HashMap<>();
706
	private final Map<Integer, String> sourceUseCacheMap  = new HashMap<>();
707
	private final Map<Integer, String> fossilStatusCacheMap  = new HashMap<>();
708
	private final Map<Integer, String> typeDesigStatusCacheMap  = new HashMap<>();
709
	private final Map<Integer, String> sourceCategoryCacheMap  = new HashMap<>();
710
	private final Map<Integer, String> occurrenceStatusCacheMap  = new HashMap<>();
711
	private final Map<Integer, Map<Integer, String>> rankCacheMap  = new  HashMap<>();
712
	private final Map<Integer, Map<Integer, String>> rankAbbrevCacheMap  = new  HashMap<>();
713

    
714
    private final Source destination;
715

    
716
    public PesiTransformer(Source destination) {
717
        this.destination = destination;
718
        fillMaps();
719
    }
720
	private void fillMaps() {
721
		try {
722
		    //TDWG
723
			String sql = " SELECT AreaId, AreaName, AreaTdwgCode, AreaEmCode, AreaFaEuCode FROM Area";
724
			ResultSet rs = destination.getResultSet(sql);
725
			while (rs.next()){
726
				String tdwg = rs.getString("AreaTdwgCode");
727
				Integer id = rs.getInt("AreaId");
728
				String label = rs.getString("AreaName");
729

    
730
				if (StringUtils.isNotBlank(tdwg)){
731
					this.tdwgKeyMap.put(tdwg, id);
732
				}
733
				this.areaCacheMap.put(id, label);
734
			}
735

    
736
			//rankCache
737
			sql = " SELECT KingdomId, RankId, Rank, RankAbbrev, Kingdom  FROM Rank";
738
			rs = destination.getResultSet(sql);
739
			while (rs.next()){
740
				String rank = rs.getString("Rank");
741
				String abbrev = rs.getString("RankAbbrev");
742
				Integer rankId = rs.getInt("RankId");
743
				Integer kingdomId = rs.getInt("KingdomId");
744
				String kingdom = rs.getString("Kingdom");
745

    
746
				//rank str
747
				Map<Integer, String> kingdomMap = rankCacheMap.get(kingdomId);
748
				if (kingdomMap == null){
749
					kingdomMap = new HashMap<>();
750
					rankCacheMap.put(kingdomId, kingdomMap);
751
				}
752
				kingdomMap.put(rankId, rank);
753

    
754
				if (rank.equals("Kingdom")){
755
				    pesiKingdomMap.put(kingdom, kingdomId);
756
				}
757

    
758
				//rank abbrev
759
				Map<Integer, String> kingdomAbbrevMap = rankAbbrevCacheMap.get(kingdomId);
760
				if (kingdomAbbrevMap == null){
761
					kingdomAbbrevMap = new HashMap<>();
762
					rankAbbrevCacheMap.put(kingdomId, kingdomAbbrevMap);
763
				}
764
				if (StringUtils.isNotBlank(abbrev)){
765
					kingdomAbbrevMap.put(rankId, abbrev);
766
				}
767
			}
768

    
769
			//languageCache
770
			fillSingleMap(languageCacheMap, "Language");
771

    
772
			//feature / note category
773
			fillSingleMap(featureCacheMap, "NoteCategory");
774

    
775
			//nameStatusCache
776
			fillSingleMap(nameStatusCacheMap, "NameStatus", "NomStatus");
777

    
778
			//qualityStatusCache
779
			fillSingleMap(qualityStatusCacheMap, "QualityStatus");
780

    
781
			//taxonStatusCache
782
			fillSingleMap(taxonStatusCacheMap, "TaxonStatus", "Status");
783

    
784
			//sourceUse
785
			fillSingleMap(sourceUseCacheMap, "SourceUse");
786

    
787
			//fossil status
788
			fillSingleMap(fossilStatusCacheMap, "FossilStatus");
789

    
790
			//fossil status
791
			fillSingleMap(typeDesigStatusCacheMap, "FossilStatus");
792

    
793
			//fossil status
794
			fillSingleMap(occurrenceStatusCacheMap, "OccurrenceStatus");
795

    
796
			//source category
797
			fillSingleMap(sourceCategoryCacheMap, "SourceCategory", "Category", "SourceCategoryId");
798

    
799
			//RelTaxonQualifier
800
			sql = " SELECT QualifierId, Qualifier, ZoologQualifier FROM RelTaxonQualifier ";
801
			rs = destination.getResultSet(sql);
802
			while (rs.next()){
803
				Integer key = rs.getInt("QualifierId");
804
				String cache = rs.getString("Qualifier");
805
				if (StringUtils.isNotBlank(cache)){
806
					this.taxRelQualifierCacheMap.put(key, cache);
807
				}
808
				String zoologCache = rs.getString("ZoologQualifier");
809
				if (StringUtils.isNotBlank(zoologCache)){
810
					this.taxRelZooQualifierCacheMap.put(key, zoologCache);
811
				}
812
			}
813

    
814
			//language code map
815
			sql = " SELECT LanguageId, Language, ISO639_1, ISO639_2, ISO639_3 FROM Language";
816
			rs = destination.getResultSet(sql);
817
			while (rs.next()){
818
                Integer id = rs.getInt("LanguageId");
819
                Integer oldId;
820
                String iso639_1 = rs.getString("ISO639_1");
821
                if (StringUtils.isNotBlank(iso639_1)){
822
                    oldId = languageCodeToKeyMap.put(iso639_1, id);
823
                    checkOldId(id, oldId, iso639_1);
824
                }
825
                String iso639_2 = rs.getString("ISO639_2");
826
                if (StringUtils.isNotBlank(iso639_2)){
827
                    oldId = languageCodeToKeyMap.put(iso639_2, id);
828
                    checkOldId(id, oldId, iso639_1);
829
                }
830
                String iso639_3 = rs.getString("ISO639_3");
831
                if (StringUtils.isNotBlank(iso639_3)){
832
                    oldId = languageCodeToKeyMap.put(iso639_3, id);
833
                    checkOldId(id, oldId, iso639_1);
834
                }
835
            }
836
			rs = null;
837
		} catch (Exception e) {
838
			logger.error("Exception when trying to read area map", e);
839
			e.printStackTrace();
840
		}
841
	}
842

    
843
    private void checkOldId(Integer id, Integer oldId, String isoCode) {
844
        if (oldId != null && !oldId.equals(id)){
845
            logger.warn("Language code " + isoCode + " exists for >1 language IDs. This should not happen.");
846
        }
847
    }
848

    
849
    private void fillSingleMap(Map<Integer, String> map, String tableName) throws SQLException {
850
		fillSingleMap(map, tableName, tableName,  tableName + "Id");
851
	}
852

    
853
	private void fillSingleMap(Map<Integer, String> map, String tableName, String attr) throws SQLException {
854
			fillSingleMap(map, tableName, attr,  attr + "Id");
855
	}
856

    
857
	private void fillSingleMap(Map<Integer, String> map, String tableName, String attr, String idAttr) throws SQLException {
858
		String sql;
859
		ResultSet rs;
860
		sql = " SELECT %s, %s FROM %s ";
861
		sql = String.format(sql, idAttr, attr, tableName);
862
		rs = destination.getResultSet(sql);
863
		while (rs.next()){
864
			Integer key = rs.getInt(idAttr);
865
			String cache = rs.getString(attr);
866
			if (StringUtils.isNotBlank(cache)){
867
				map.put(key, cache);
868
			}
869
		}
870
	}
871

    
872
	/**
873
	 * Converts the databaseString to its abbreviation if its known.
874
	 * Otherwise the databaseString is returned.
875
	 */
876
	public static String databaseString2Abbreviation(String databaseString) {
877
		String result = databaseString;
878
		if (databaseString.equals("Fauna Europaea database")) {
879
			result = "FaEu";
880
		}
881
		return result;
882
	}
883

    
884
	/**
885
	 * Returns the OccurrenceStatusId for a given PresenceAbsenceTerm.
886
	 */
887
	public static Integer presenceAbsenceTerm2OccurrenceStatusId(PresenceAbsenceTerm term) {
888
		Integer result = null;
889
		if (term == null){
890
			return null;
891
		//present
892
		}else if (term.isInstanceOf(PresenceAbsenceTerm.class)) {
893
			PresenceAbsenceTerm presenceTerm = CdmBase.deproxy(term, PresenceAbsenceTerm.class);
894
			if (presenceTerm.equals(PresenceAbsenceTerm.PRESENT()) ||
895
					presenceTerm.equals(PresenceAbsenceTerm.INTRODUCED_DOUBTFULLY_INTRODUCED()) ||
896
					presenceTerm.equals(PresenceAbsenceTerm.NATIVE_DOUBTFULLY_NATIVE())) {
897
				result = STATUS_PRESENT;
898
			} else if (presenceTerm.equals(PresenceAbsenceTerm.NATIVE())) {
899
				result = STATUS_NATIVE;
900
			} else if (presenceTerm.equals(PresenceAbsenceTerm.INTRODUCED()) ||
901
					presenceTerm.equals(PresenceAbsenceTerm.CASUAL()) ||
902
					presenceTerm.equals(PresenceAbsenceTerm.INTRODUCED_UNCERTAIN_DEGREE_OF_NATURALISATION())) {
903
				result = STATUS_INTRODUCED;
904
			} else if (presenceTerm.equals(PresenceAbsenceTerm.NATURALISED())
905
					|| presenceTerm.equals(PresenceAbsenceTerm.NATURALISED())) {
906
				result = STATUS_NATURALISED;
907
			} else if (presenceTerm.equals(PresenceAbsenceTerm.INVASIVE())) {
908
				result = STATUS_INVASIVE;
909
			} else if (presenceTerm.equals(PresenceAbsenceTerm.CULTIVATED())) {
910
				result = STATUS_MANAGED;
911
			} else if (presenceTerm.equals(PresenceAbsenceTerm.PRESENT_DOUBTFULLY())||
912
					presenceTerm.equals(PresenceAbsenceTerm.INTRODUCED_PRESENCE_QUESTIONABLE()) ||
913
					presenceTerm.equals(PresenceAbsenceTerm.NATIVE_PRESENCE_QUESTIONABLE() )) {
914
				result = STATUS_DOUBTFUL;
915
			//absent
916
			}else if (presenceTerm.equals(PresenceAbsenceTerm.ABSENT()) || presenceTerm.equals(PresenceAbsenceTerm.NATIVE_FORMERLY_NATIVE()) ||
917
					presenceTerm.equals(PresenceAbsenceTerm.CULTIVATED_REPORTED_IN_ERROR()) || presenceTerm.equals(PresenceAbsenceTerm.INTRODUCED_REPORTED_IN_ERROR()) ||
918
					presenceTerm.equals(PresenceAbsenceTerm.INTRODUCED_FORMERLY_INTRODUCED()) || presenceTerm.equals(PresenceAbsenceTerm.NATIVE_REPORTED_IN_ERROR() ) ) {
919
				result = STATUS_ABSENT;
920
			} else {
921
				logger.error("PresenceAbsenceTerm could not be translated to datawarehouse occurrence status id: " + presenceTerm.getLabel());
922
			}
923
		}
924
		return result;
925
	}
926

    
927
	@Override
928
	public String getCacheByPresenceAbsenceTerm(PresenceAbsenceTerm status) throws UndefinedTransformerMethodException {
929
		if (status == null){
930
			return null;
931
		}else{
932
			return this.occurrenceStatusCacheMap.get(getKeyByPresenceAbsenceTerm(status));
933
		}
934
	}
935

    
936
	@Override
937
	public Object getKeyByPresenceAbsenceTerm(PresenceAbsenceTerm status) throws UndefinedTransformerMethodException {
938
		return presenceAbsenceTerm2OccurrenceStatusId(status);
939
	}
940

    
941
	@Override
942
	public String getCacheByNamedArea(NamedArea namedArea) throws UndefinedTransformerMethodException {
943
		NamedArea area = CdmBase.deproxy(namedArea);
944
		if (area == null){
945
			return null;
946
		}else{
947
			return this.areaCacheMap.get(getKeyByNamedArea(area));
948
		}
949
	}
950

    
951
	@Override
952
	public Object getKeyByNamedArea(NamedArea area) throws UndefinedTransformerMethodException {
953
		NamedArea namedArea = CdmBase.deproxy(area);
954

    
955
		if (area == null) {
956
			return null;
957
		//TDWG areas
958
		} else if (area.getVocabulary().getUuid().equals(NamedArea.uuidTdwgAreaVocabulary)) {
959
			String abbrevLabel = namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel();
960
			Integer result = this.tdwgKeyMap.get(abbrevLabel);
961
			if (result == null){
962
				logger.warn("Unknown TDWGArea: " + area.getTitleCache());
963
			}
964
			return result;
965
		//countries
966
		}else if (namedArea.isInstanceOf(Country.class)){
967
			if (namedArea.equals(Country.UKRAINE())) { return AREA_UKRAINE_INCLUDING_CRIMEA; }
968
			else if (namedArea.equals(Country.AZERBAIJANREPUBLICOF())) { return AREA_AZERBAIJAN_INCLUDING_NAKHICHEVAN; }
969
			else if (namedArea.equals(Country.GEORGIA())) { return AREA_GEORGIA; }
970
			else if (namedArea.equals(Country.RUSSIANFEDERATION())) { return AREA_THE_RUSSIAN_FEDERATION; }
971
			else if (namedArea.equals(Country.UNITEDKINGDOMOFGREATBRITAINANDNORTHERNIRELAND())) { return AREA_UNITED_KINGDOM; }
972
			else if (namedArea.equals(Country.DENMARKKINGDOMOF())) { return AREA_DENMARK_COUNTRY; }
973
			else if (namedArea.equals(Country.TURKEYREPUBLICOF())) { return AREA_TURKEY_COUNTRY; }
974
			else {
975
				logger.warn("Unknown Country: " + area.getTitleCache());
976
			}
977

    
978
		}else if (area.getVocabulary().getUuid().equals(BerlinModelTransformer.uuidVocEuroMedAreas)){
979
			if (namedArea.getUuid().equals(BerlinModelTransformer.uuidEM)) {
980
//				logger.warn("E+M area not available in PESI");
981
				return null;
982
			}
983
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidEUR)) { logger.warn("EUR area not available in PESI"); return null; }
984
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAb)) { return AREA_AZERBAIJAN_INCLUDING_NAKHICHEVAN; }
985
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAb_A)) { return AREA_AZERBAIJAN; }
986
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAb_N)) { return AREA_NAKHICHEVAN; }
987
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAE)) { return AREA_EAST_AEGEAN_ISLANDS; }
988
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAE_G)) { return AREA_GREEK_EAST_AEGEAN_ISLANDS; }
989
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAE_T)) { return AREA_TURKISH_EAST_AEGEAN_ISLANDS; }
990
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAg)) { return AREA_ALGERIA; }
991
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAl)) { return AREA_ALBANIA; }
992
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAr)) { return AREA_ARMENIA; }
993
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAu)) { return AREA_AUSTRIA_WITH_LIECHTENSTEIN; }
994
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAu_A)) { return AREA_AUSTRIA; }
995
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAu_L)) { return AREA_LIECHTENSTEIN; }
996
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAz)) { return AREA_AZORES; }
997
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAz_C)) { return AREA_CORVO; }
998
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAz_F)) { return AREA_FAIAL; }
999
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAz_G)) { return AREA_GRACIOSA; }
1000
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAz_J)) { return AREA_SAO_JORGE; }
1001
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAz_L)) { return AREA_FLORES; }
1002
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAz_M)) { return AREA_SAO_MIGUEL; }
1003
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAz_P)) { return AREA_PICO; }
1004
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAz_S)) { return AREA_SANTA_MARIA; }
1005
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAz_T)) { return AREA_TERCEIRA; }
1006
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBe)) { return AREA_BELGIUM_WITH_LUXEMBOURG; }
1007
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBe_B)) { return AREA_BELGIUM; }
1008
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBe_L)) { return AREA_LUXEMBOURG; }
1009
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBH)) { return AREA_BOSNIA_HERZEGOVINA; }
1010
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBl)) { return AREA_BALEARES; }
1011
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBl_I)) { return AREA_IBIZA_WITH_FORMENTERA; }
1012
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBl_M)) { return AREA_MALLORCA; }
1013
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBl_N)) { return AREA_MENORCA; }
1014
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBr)) { return AREA_GREAT_BRITAIN; }
1015
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBt)) { return AREA_BALTIC_STATES_ESTONIA_LATVIA_LITHUANIA_AND_KALININGRAD_REGION; }
1016
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBu)) { return AREA_BULGARIA; }
1017
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBy)) { return AREA_BELARUS; }
1018
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCa)) { return AREA_CANARY_ISLANDS; }
1019
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCa_C)) { return AREA_GRAN_CANARIA; }
1020
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCa_F)) { return AREA_FUERTEVENTURA_WITH_LOBOS; }
1021
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCa_G)) { return AREA_GOMERA; }
1022
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCa_H)) { return AREA_HIERRO; }
1023
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCa_L)) { return AREA_LANZAROTE_WITH_GRACIOSA; }
1024
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCa_P)) { return AREA_LA_PALMA; }
1025
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCa_T)) { return AREA_TENERIFE; }
1026
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCc)) { return AREA_CAUCASUS_REGION; }
1027
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCg)) { return AREA_MONTENEGRO; }
1028
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCo)) { return AREA_CORSE; }
1029
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCr)) { return AREA_CRETE_WITH_KARPATHOS_KASOS_AND_GAVDHOS; }
1030
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCs)) { return AREA_CZECH_REPUBLIC; }
1031
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCt)) { return AREA_CROATIA; }
1032
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCy)) { return AREA_CYPRUS; }
1033
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCz)) { return AREA_FORMER_CZECHOSLOVAKIA; }
1034
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidDa)) { return AREA_DENMARK_WITH_BORNHOLM; }
1035
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidEg)) { return AREA_EGYPT; }
1036
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidEs)) { return AREA_ESTONIA; }
1037
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidFa)) { return AREA_FAROE_ISLANDS; }
1038
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidFe)) { return AREA_FINLAND_WITH_AHVENANMAA; }
1039
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidGa)) { return AREA_FRANCE; }
1040
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidGa_C)) { return AREA_CHANNEL_ISLANDS; }
1041
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidGa_F)) { return AREA_FRENCH_MAINLAND; }
1042
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidGa_M)) { return AREA_MONACO; }
1043

    
1044
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidGe)) { return AREA_GERMANY; }
1045
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidGg)) { return AREA_GEORGIA; }
1046

    
1047
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidGg_G)) { return AREA_GEORGIA_G; }
1048
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidGg_A)) { return AREA_ABKHAZIA; }
1049
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidGg_D)) { return AREA_ADZARIA; }
1050

    
1051
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidGr)) { return AREA_GREECE_WITH_CYCLADES_AND_MORE_ISLANDS; }
1052
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidHb)) { return AREA_IRELAND; }
1053
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidHb_E)) { return AREA_REPUBLIC_OF_IRELAND; }
1054
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidHb_N)) { return AREA_NORTHERN_IRELAND; }
1055
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidHe)) { return AREA_SWITZERLAND; }
1056
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidHo)) { return AREA_NETHERLANDS; }
1057
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidHs)) { return AREA_SPAIN; }
1058
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidHs_A)) { return AREA_ANDORRA; }
1059
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidHs_G)) { return AREA_GIBRALTAR; }
1060
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidHs_S)) { return AREA_KINGDOM_OF_SPAIN; }
1061
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidHu)) { return AREA_HUNGARY; }
1062
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidIJ)) { return AREA_ISRAEL_JORDAN; }
1063
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidIr)) { return AREA_ISRAEL; }
1064
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidIs)) { return AREA_ICELAND; }
1065
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidIt)) { return AREA_ITALY; }
1066
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidIt_I)) { return AREA_ITALIAN_MAINLAND; }
1067
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidIt_S)) { return AREA_SAN_MARINO; }
1068
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidJo)) { return AREA_JORDAN; }
1069
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidJu)) { return AREA_FORMER_JUGOSLAVIA; }
1070
            else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidKo)) { return AREA_KOSOVO; }
1071
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidLa)) { return AREA_LATVIA; }
1072
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidLe)) { return AREA_LEBANON; }
1073
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidLi)) { return AREA_LIBYA; }
1074
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidLS)) { return AREA_LEBANON_SYRIA; }
1075
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidLt)) { return AREA_LITHUANIA; }
1076
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidLu)) { return AREA_PORTUGUESE_MAINLAND; }
1077
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidMa)) { return AREA_MOROCCO; }
1078
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidMd)) { return AREA_MADEIRA_ARCHIPELAGO; }
1079
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidMd_D)) { return AREA_DESERTAS; }
1080
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidMd_M)) { return AREA_MADEIRA; }
1081
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidMd_P)) { return AREA_PORTO_SANTO; }
1082
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidMk)) { return AREA_THE_FORMER_JUGOSLAV_REPUBLIC_OF_MAKEDONIJA; }
1083
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidMo)) { return AREA_MOLDOVA; }
1084
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidNo)) { return AREA_NORWEGIAN_MAINLAND; }
1085
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidPo)) { return AREA_POLAND; }
1086
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRf)) { return AREA_THE_RUSSIAN_FEDERATION; }
1087
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRf_A)) { return AREA_NOVAYA_ZEMLYA_AND_FRANZ_JOSEPH_LAND; }
1088
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRf_C)) { return AREA_CENTRAL_EUROPEAN_RUSSIA; }
1089
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRf_CS)) { return AREA_NORTH_CAUCASUS; }
1090
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRf_E)) { return AREA_EASTERN_EUROPEAN_RUSSIA; }
1091
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRf_K)) { return AREA_KALININGRAD; }
1092
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRf_N)) { return AREA_NORTHERN_EUROPEAN_RUSSIA; }
1093
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRf_NW)) { return AREA_NORTHWEST_EUROPEAN_RUSSIA; }
1094
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRf_S)) { return AREA_SOUTH_EUROPEAN_RUSSIA; }
1095
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRm)) { return AREA_ROMANIA; }
1096
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRs)) { return AREA_FORMER_USSR; }
1097
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRs_B)) { return AREA_RUSSIA_BALTIC; }
1098
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRs_C)) { return AREA_RUSSIA_CENTRAL; }
1099
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRs_E)) { return AREA_RUSSIA_SOUTHEAST; }
1100
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRs_K)) { return AREA_CRIMEA; }
1101
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRs_N)) { return AREA_RUSSIA_NORTHERN; }
1102
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRs_W)) { return AREA_RUSSIA_SOUTHWEST; }
1103
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSa)) { return AREA_SARDEGNA; }
1104
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSb)) { return AREA_SVALBARD_WITH_BJORNOYA_AND_JAN_MAYEN; }
1105
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSe)) { return AREA_SERBIA; }
1106
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSg)) { return AREA_SELVAGENS_ISLANDS; }
1107
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSi)) { return AREA_SICILY_WITH_MALTA; }
1108
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSi_M)) { return AREA_MALTA; }
1109
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSi_S)) { return AREA_SICILY; }
1110
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSk)) { return AREA_SLOVAKIA; }
1111
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSl)) { return AREA_SLOVENIA; }
1112
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSM)) { return AREA_SERBIA_WITH_MONTENEGRO; }
1113
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSn)) { return AREA_SINAI; }
1114
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSr)) { return AREA_SERBIA_INCLUDING_VOJVODINA_AND_WITH_KOSOVO; }
1115
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSu)) { return AREA_SWEDEN; }
1116
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSy)) { return AREA_SYRIA; }
1117
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidTcs)) { return AREA_TRANSCAUCASUS; }
1118
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidTn)) { return AREA_TUNISIA; }
1119
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidTu)) { return AREA_TURKEY; }
1120
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidTu_A)) { return AREA_ASIATIC_TURKEY; }
1121
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidTu_E)) { return AREA_EUROPEAN_TURKEY; }
1122
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidUk)) { return AREA_UKRAINE_INCLUDING_CRIMEA; }
1123
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidUk_K)) { return AREA_CRIMEA; }
1124
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidUk_U)) { return AREA_UKRAINE; }
1125
			else {
1126
                logger.warn("Unknown EuroMed distribution area: " + area.getTitleCache());
1127
            }
1128
        }else if (area.getVocabulary().getUuid().equals(BerlinModelTransformer.uuidVocEuroMedCommonNameAreas)){
1129
            UUID uuidArea = namedArea.getUuid();
1130
            if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameAlbania)) { return AREA_ALBANIA; }
1131
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameAndorra)) { return AREA_ANDORRA; }
1132
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameArmenia)) { return AREA_ARMENIA; }
1133
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameAustria)) { return AREA_AUSTRIA; }
1134
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameAzerbaijan)) { return AREA_AZERBAIJAN; }
1135
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameAzores)) { return AREA_AZORES; }
1136
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameBaleares)) { return AREA_BALEARES; }
1137
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameBelarus)) { return AREA_BELARUS; }
1138
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameBelgium)) { return AREA_BELGIUM; }
1139
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameBulgaria)) { return AREA_BULGARIA; }
1140
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameCanaryIs)) { return AREA_CANARY_ISLANDS; }
1141
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameCorse)) { return AREA_CORSE; }
1142
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameCrete)) { return AREA_CRETE; }
1143
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameCrimea)) { return AREA_CRIMEA; }
1144
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameCroatia)) { return AREA_CROATIA; }
1145
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameCzechRepublic)) { return AREA_CZECH_REPUBLIC; }
1146
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameDenmark)) { return AREA_DENMARK_COUNTRY; } //??
1147
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameEastAegeanIslands)) { return AREA_EAST_AEGEAN_ISLANDS; }
1148
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameEstonia)) { return AREA_ESTONIA; }
1149
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameEstonia)) { return AREA_ESTONIA; }
1150
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameFaroer)) { return AREA_FAROE_ISLANDS; }
1151
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameFinland)) { return AREA_FINLAND_WITH_AHVENANMAA; }  //??
1152
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameFinlandWithAhvenanmaa)) { return AREA_FINLAND_WITH_AHVENANMAA; }
1153
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameFrance)) { return AREA_FRANCE; }
1154
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameGeorgia)) { return AREA_GEORGIA; }
1155
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameGermany)) { return AREA_GERMANY; }
1156
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameGreatBritain)) { return AREA_GREAT_BRITAIN; }
1157
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameGreece)) { return AREA_GREECE_COUNTRY; } //??
1158
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameHungary)) { return AREA_HUNGARY; }
1159
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameIbizaWithFormentera)) { return AREA_IBIZA_WITH_FORMENTERA; }
1160
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameIceland)) { return AREA_ICELAND; }
1161
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameIreland)) { return AREA_IRELAND; }
1162
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameIsrael)) { return AREA_ISRAEL; }
1163
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameItaly)) { return AREA_ITALY; }
1164
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameLaPalma)) { return AREA_LA_PALMA; }
1165
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameLativa)) { return AREA_LATVIA; }
1166
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameLebanon)) { return AREA_LEBANON; }
1167
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameLibya)) { return AREA_LIBYA; }
1168
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameLithuania)) { return AREA_LITHUANIA; }
1169
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameMadeira)) { return AREA_MADEIRA; }
1170
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameMallorca)) { return AREA_MALLORCA; }
1171
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameMalta)) { return AREA_MALTA; }
1172
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameMenorca)) { return AREA_MENORCA; }
1173
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameMoldova)) { return AREA_MOLDOVA; }
1174
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameMorocco)) { return AREA_MOROCCO; }
1175
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameNetherlands)) { return AREA_NETHERLANDS; }
1176
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameNorway)) { return AREA_NORWEGIAN_MAINLAND; }
1177
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNamePoland)) { return AREA_POLAND; }
1178
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNamePortugal)) { return AREA_PORTUGAL_COUNTRY; }  //??
1179
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameRomania)) { return AREA_ROMANIA; }
1180
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameRussiaCentral)) { return AREA_RUSSIA_CENTRAL; }
1181
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameRussianFederation)) { return AREA_THE_RUSSIAN_FEDERATION; }
1182
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameSardegna)) { return AREA_SARDEGNA; }
1183
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameSerbiaMontenegro)) { return AREA_SERBIA_WITH_MONTENEGRO; }
1184
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameSlovakia)) { return AREA_SLOVAKIA; }
1185
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameSlovenia)) { return AREA_SLOVENIA; }
1186
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameSouthEuropeanRussia)) { return AREA_SOUTH_EUROPEAN_RUSSIA; }
1187
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameSpain)) { return AREA_SPAIN; }
1188
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameSweden)) { return AREA_SWEDEN; }
1189
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameSwitzerland)) { return AREA_SWITZERLAND; }
1190
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameSyria)) { return AREA_SYRIA; }
1191
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameTenerife)) { return AREA_TENERIFE; }
1192
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameTurkey)) { return AREA_TURKEY; }  //??
1193
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameUkraine)) { return AREA_UKRAINE; }  //??
1194
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameWales)) { return AREA_WALES; }
1195
            else {
1196
                logger.warn("Unknown EuroMed common name area: " + area.getTitleCache());
1197
            }
1198

    
1199
        }else if (area.getVocabulary().getUuid().equals(FaunaEuropaeaTransformer.uuidFauEuArea)){
1200
            UUID uuidArea = namedArea.getUuid();
1201
            if (uuidArea.equals(uuidAreaAD)) { return AREA_ANDORRA; }
1202
            else if (uuidArea.equals(uuidAreaAFR)) { return AREA_AFRO_TROPICAL_REGION; }
1203
            else if (uuidArea.equals(uuidAreaAL)) { return AREA_ALBANIA; }
1204
            else if (uuidArea.equals(uuidAreaAT)) { return AREA_AUSTRIA; }
1205
			else if (uuidArea.equals(uuidAreaAUS)) { return AREA_AUSTRALIAN_REGION; }
1206
			else if (uuidArea.equals(uuidAreaBA)) { return AREA_BOSNIA_HERZEGOVINA; }
1207
			else if (uuidArea.equals(uuidAreaBE)) { return AREA_BELGIUM; }
1208
			else if (uuidArea.equals(uuidAreaBG)) { return AREA_BULGARIA; }
1209
			else if (uuidArea.equals(uuidAreaBY)) { return AREA_BELARUS; }
1210
			else if (uuidArea.equals(uuidAreaCH)) { return AREA_SWITZERLAND; }
1211
			else if (uuidArea.equals(uuidAreaCY)) { return AREA_CYPRUS; }
1212
			else if (uuidArea.equals(uuidAreaCZ)) { return AREA_CZECH_REPUBLIC; }
1213
			else if (uuidArea.equals(uuidAreaDE)) { return AREA_GERMANY; }
1214
			else if (uuidArea.equals(uuidAreaDK_DEN)) { return AREA_DENMARK_WITH_BORNHOLM; }
1215
			else if (uuidArea.equals(uuidAreaDK_FOR)) { return AREA_FAROE_ISLANDS; }
1216
			else if (uuidArea.equals(uuidAreaEE)) { return AREA_ESTONIA; }
1217
			else if (uuidArea.equals(uuidAreaEPA)) { return AREA_EAST_PALAEARCTIC; }
1218
			else if (uuidArea.equals(uuidAreaES_BAL)) { return AREA_BALEARES; }
1219
			else if (uuidArea.equals(uuidAreaES_CNY)) { return AREA_CANARY_ISLANDS; }
1220
			else if (uuidArea.equals(uuidAreaES_SPA)) { return AREA_KINGDOM_OF_SPAIN; }
1221
			else if (uuidArea.equals(uuidAreaFI)) { return AREA_FINLAND_WITH_AHVENANMAA; }
1222
			else if (uuidArea.equals(uuidAreaFR_COR)) { return AREA_CORSE; }
1223
			else if (uuidArea.equals(uuidAreaFR_FRA)) { return AREA_FRENCH_MAINLAND; }
1224
			else if (uuidArea.equals(uuidAreaGB_CI)) { return AREA_CHANNEL_ISLANDS; }
1225
			else if (uuidArea.equals(uuidAreaGB_GI)) { return AREA_GIBRALTAR; }
1226
			else if (uuidArea.equals(uuidAreaGB_GRB)) { return AREA_GREAT_BRITAIN; }
1227
			else if (uuidArea.equals(uuidAreaGB_NI)) { return AREA_NORTHERN_IRELAND; }
1228
			else if (uuidArea.equals(uuidAreaGR_AEG)) { return AREA_NORTH_AEGEAN_ISLANDS; }
1229
			else if (uuidArea.equals(uuidAreaGR_CYC)) { return AREA_CYCLADES_ISLANDS; }
1230
			else if (uuidArea.equals(uuidAreaGR_DOD)) { return AREA_DODECANESE_ISLANDS; }
1231
			else if (uuidArea.equals(uuidAreaGR_KRI)) { return AREA_CRETE; }
1232
			else if (uuidArea.equals(uuidAreaGR_GRC)) { return AREA_GREEK_MAINLAND; }
1233
			else if (uuidArea.equals(uuidAreaHR)) { return AREA_CROATIA; }
1234
			else if (uuidArea.equals(uuidAreaHU)) { return AREA_HUNGARY; }
1235
			else if (uuidArea.equals(uuidAreaIE)) { return AREA_REPUBLIC_OF_IRELAND; }
1236
			else if (uuidArea.equals(uuidAreaIS)) { return AREA_ICELAND; }
1237
			else if (uuidArea.equals(uuidAreaIT_ITA)) { return AREA_ITALIAN_MAINLAND; }
1238
			else if (uuidArea.equals(uuidAreaIT_SAR)) { return AREA_SARDEGNA; }
1239
			else if (uuidArea.equals(uuidAreaIT_SI)) { return AREA_SICILY; }
1240
			else if (uuidArea.equals(uuidAreaLI)) { return AREA_LIECHTENSTEIN; }
1241
			else if (uuidArea.equals(uuidAreaLT)) { return AREA_LITHUANIA; }
1242
			else if (uuidArea.equals(uuidAreaLU)) { return AREA_LUXEMBOURG; }
1243
			else if (uuidArea.equals(uuidAreaLV)) { return AREA_LATVIA; }
1244
			else if (uuidArea.equals(uuidAreaMC)) { return AREA_MONACO; }
1245
			else if (uuidArea.equals(uuidAreaMD)) { return AREA_MOLDOVA; }
1246
			else if (uuidArea.equals(uuidAreaMK)) { return AREA_THE_FORMER_JUGOSLAV_REPUBLIC_OF_MAKEDONIJA; }
1247
			else if (uuidArea.equals(uuidAreaMT)) { return AREA_MALTA; }
1248
			else if (uuidArea.equals(uuidAreaNAF)) { return AREA_NORTHERN_AFRICA; }
1249
			else if (uuidArea.equals(uuidAreaNEA)) { return AREA_NEARCTIC_REGION; }
1250
			else if (uuidArea.equals(uuidAreaNEO)) { return AREA_NEOTROPICAL_REGION; }
1251
			else if (uuidArea.equals(uuidAreaNL)) { return AREA_NETHERLANDS; }
1252
			else if (uuidArea.equals(uuidAreaNO_NOR)) { return AREA_NORWEGIAN_MAINLAND; }
1253
			else if (uuidArea.equals(uuidAreaNO_SVA)) { return AREA_SVALBARD_WITH_BJORNOYA_AND_JAN_MAYEN; }
1254
			else if (uuidArea.equals(uuidAreaNRE)) { return AREA_NEAR_EAST; }
1255
			else if (uuidArea.equals(uuidAreaORR)) { return AREA_ORIENTAL_REGION; }
1256
			else if (uuidArea.equals(uuidAreaPL)) { return AREA_POLAND; }
1257
			else if (uuidArea.equals(uuidAreaPT_AZO)) { return AREA_AZORES; }
1258
			else if (uuidArea.equals(uuidAreaPT_MDR)) { return AREA_MADEIRA; }
1259
			else if (uuidArea.equals(uuidAreaPT_POR)) { return AREA_PORTUGUESE_MAINLAND; }
1260
			else if (uuidArea.equals(uuidAreaPT_SEL)) { return AREA_SELVAGENS_ISLANDS; }
1261
			else if (uuidArea.equals(uuidAreaRO)) { return AREA_ROMANIA; }
1262
			else if (uuidArea.equals(uuidAreaRU_FJL)) { return AREA_FRANZ_JOSEF_LAND; }
1263
			else if (uuidArea.equals(uuidAreaRU_KGD)) { return AREA_KALININGRAD; }
1264
			else if (uuidArea.equals(uuidAreaRU_NOZ)) { return AREA_NOVAYA_ZEMLYA; }
1265
			else if (uuidArea.equals(uuidAreaRU_RUC)) { return AREA_CENTRAL_EUROPEAN_RUSSIA; }
1266
			else if (uuidArea.equals(uuidAreaRU_RUE)) { return AREA_EASTERN_EUROPEAN_RUSSIA; }
1267
			else if (uuidArea.equals(uuidAreaRU_RUN)) { return AREA_NORTHERN_EUROPEAN_RUSSIA; }
1268
			else if (uuidArea.equals(uuidAreaRU_RUS)) { return AREA_SOUTH_EUROPEAN_RUSSIA; }
1269
			else if (uuidArea.equals(uuidAreaRU_RUW)) { return AREA_NORTHWEST_EUROPEAN_RUSSIA; }
1270
			else if (uuidArea.equals(uuidAreaSE)) { return AREA_SWEDEN; }
1271
			else if (uuidArea.equals(uuidAreaSI)) { return AREA_SLOVENIA; }
1272
			else if (uuidArea.equals(uuidAreaSK)) { return AREA_SLOVAKIA; }
1273
			else if (uuidArea.equals(uuidAreaSM)) { return AREA_SAN_MARINO; }
1274
			else if (uuidArea.equals(uuidAreaTR_TUE)) { return AREA_EUROPEAN_TURKEY; }
1275
			else if (uuidArea.equals(uuidAreaUA)) { return AREA_UKRAINE_INCLUDING_CRIMEA; }
1276
			else if (uuidArea.equals(uuidAreaVA)) { return AREA_VATICAN_CITY; }
1277
			else if (uuidArea.equals(uuidAreaYU)) { return AREA_FORMER_JUGOSLAVIA; }
1278

    
1279
        }else if (area.getVocabulary().getUuid().equals(ErmsTransformer.uuidVocErmsAreas)){
1280
			//ERMS
1281
            UUID uuidArea = namedArea.getUuid();
1282
            if (uuidArea.equals(ErmsTransformer.uuidEuropeanMarineWaters)) { return AREA_EUROPEAN_MARINE_WATERS; }
1283
			else if (//(namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("MES") ||   /carefull: NPE!
1284
					(uuidArea.equals(ErmsTransformer.uuidMediterraneanSea))) { return AREA_MEDITERRANEAN_SEA; } // abbreviated label missing
1285
			else if (uuidArea.equals(ErmsTransformer.uuidWhiteSea)) { return AREA_WHITE_SEA; }
1286
			else if (uuidArea.equals(ErmsTransformer.uuidNorthSea)) { return AREA_NORTH_SEA; }
1287
			else if (uuidArea.equals(ErmsTransformer.uuidBalticSea)) { return AREA_BALTIC_SEA; }
1288
			else if (//(namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("BLS") ||   /carefull: NPE!
1289
					(uuidArea.equals(ErmsTransformer.uuidBlackSea))) { return AREA_BLACK_SEA; } // abbreviated label missing
1290
			else if (uuidArea.equals(ErmsTransformer.uuidBarentszSea)) { return AREA_BARENTSZ_SEA; }
1291
			else if (//(namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("CAS") ||   /carefull: NPE!
1292
					(uuidArea.equals(ErmsTransformer.uuidCaspianSea))) { return AREA_CASPIAN_SEA; } // abbreviated label missing
1293
			else if (uuidArea.equals(ErmsTransformer.uuidPortugueseExclusiveEconomicZone)) { return AREA_PORTUGUESE_EXCLUSIVE_ECONOMIC_ZONE; }
1294
			else if (uuidArea.equals(ErmsTransformer.uuidBelgianExclusiveEconomicZone)) { return AREA_BELGIAN_EXCLUSIVE_ECONOMIC_ZONE; }
1295
			else if (uuidArea.equals(ErmsTransformer.uuidFrenchExclusiveEconomicZone)) { return AREA_FRENCH_EXCLUSIVE_ECONOMIC_ZONE; }
1296
			else if (uuidArea.equals(ErmsTransformer.uuidEnglishChannel)) { return AREA_ENGLISH_CHANNEL; }
1297
			else if (uuidArea.equals(ErmsTransformer.uuidAdriaticSea)) { return AREA_ADRIATIC_SEA; }
1298
			else if (uuidArea.equals(ErmsTransformer.uuidBiscayBay)) { return AREA_BISCAY_BAY; }
1299
			else if (uuidArea.equals(ErmsTransformer.uuidDutchExclusiveEconomicZone)) { return AREA_DUTCH_EXCLUSIVE_ECONOMIC_ZONE; }
1300
			else if (uuidArea.equals(ErmsTransformer.uuidUnitedKingdomExclusiveEconomicZone)) { return AREA_UNITED_KINGDOM_EXCLUSIVE_ECONOMIC_ZONE; }
1301
			else if (uuidArea.equals(ErmsTransformer.uuidSpanishExclusiveEconomicZone)) { return AREA_SPANISH_EXCLUSIVE_ECONOMIC_ZONE; }
1302
			else if (uuidArea.equals(ErmsTransformer.uuidEgyptianExclusiveEconomicZone)) { return AREA_EGYPTIAN_EXCLUSIVE_ECONOMIC_ZONE; }
1303
			else if (uuidArea.equals(ErmsTransformer.uuidTirrenoSea)) { return AREA_TIRRENO_SEA; }
1304
			else if (uuidArea.equals(ErmsTransformer.uuidIcelandicExclusiveEconomicZone)) { return AREA_ICELANDIC_EXCLUSIVE_ECONOMIC_ZONE; }
1305
			else if (uuidArea.equals(ErmsTransformer.uuidIrishExclusiveeconomicZone)) { return AREA_IRISH_EXCLUSIVE_ECONOMIC_ZONE; }
1306
			else if (uuidArea.equals(ErmsTransformer.uuidIrishSea)) { return AREA_IRISH_SEA; }
1307
			else if (uuidArea.equals(ErmsTransformer.uuidIsraeliExclusiveEconomicZone)){ return 218;}
1308
			else if (uuidArea.equals(ErmsTransformer.uuidItalianExclusiveEconomicZone)) { return AREA_ITALIAN_EXCLUSIVE_ECONOMIC_ZONE; }
1309
			else if (uuidArea.equals(ErmsTransformer.uuidNorwegianSea)) { return AREA_NORWEGIAN_SEA; }
1310
			else if (uuidArea.equals(ErmsTransformer.uuidMoroccanExclusiveEconomicZone)) { return AREA_MOROCCAN_EXCLUSIVE_ECONOMIC_ZONE; }
1311
			else if (uuidArea.equals(ErmsTransformer.uuidNorwegianExclusiveEconomicZone)) { return AREA_NORWEGIAN_EXCLUSIVE_ECONOMIC_ZONE; }
1312
			else if (uuidArea.equals(ErmsTransformer.uuidSkagerrak)) { return AREA_SKAGERRAK; }
1313
			else if (uuidArea.equals(ErmsTransformer.uuidTunisianExclusiveEconomicZone)) { return AREA_TUNISIAN_EXCLUSIVE_ECONOMIC_ZONE; }
1314
			else if (uuidArea.equals(ErmsTransformer.uuidWaddenSea)) { return AREA_WADDEN_SEA; }
1315
			else if (uuidArea.equals(ErmsTransformer.uuidBaeltSea)) { return AREA_BELT_SEA; }
1316
			else if (uuidArea.equals(ErmsTransformer.uuidMarmaraSea)) { return AREA_MARMARA_SEA; }
1317
			else if (uuidArea.equals(ErmsTransformer.uuidSeaofAzov)) { return AREA_SEA_OF_AZOV; }
1318
			else if (uuidArea.equals(ErmsTransformer.uuidAegeanSea)) { return AREA_AEGEAN_SEA; }
1319
			else if (uuidArea.equals(ErmsTransformer.uuidBulgarianExclusiveEconomicZone)) { return AREA_BULGARIAN_EXCLUSIVE_ECONOMIC_ZONE; }
1320
			else if (uuidArea.equals(ErmsTransformer.uuidSouthBalticproper)) { return AREA_SOUTH_BALTIC_PROPER; }
1321
			else if (uuidArea.equals(ErmsTransformer.uuidBalticProper)) { return AREA_BALTIC_PROPER; }
1322
			else if (uuidArea.equals(ErmsTransformer.uuidNorthBalticproper)) { return AREA_NORTH_BALTIC_PROPER; }
1323
			else if (uuidArea.equals(ErmsTransformer.uuidArchipelagoSea)) { return AREA_ARCHIPELAGO_SEA; }
1324
			else if (uuidArea.equals(ErmsTransformer.uuidBothnianSea)) { return AREA_BOTHNIAN_SEA; }
1325
			else if (uuidArea.equals(ErmsTransformer.uuidGermanExclusiveEconomicZone)) { return AREA_GERMAN_EXCLUSIVE_ECONOMIC_ZONE; }
1326
			else if (uuidArea.equals(ErmsTransformer.uuidSwedishExclusiveEconomicZone)) { return AREA_SWEDISH_EXCLUSIVE_ECONOMIC_ZONE; }
1327
			else if (uuidArea.equals(ErmsTransformer.uuidUkrainianExclusiveEconomicZone)) { return AREA_UKRAINIAN_EXCLUSIVE_ECONOMIC_ZONE; }
1328
			else if (uuidArea.equals(ErmsTransformer.uuidMadeiranExclusiveEconomicZone)) { return AREA_MADEIRAN_EXCLUSIVE_ECONOMIC_ZONE; }
1329
			else if (uuidArea.equals(ErmsTransformer.uuidLebaneseExclusiveEconomicZone)) { return AREA_LEBANESE_EXCLUSIVE_ECONOMIC_ZONE; }
1330
			else if (uuidArea.equals(ErmsTransformer.uuidSpanishExclusiveEconomicZoneMediterraneanpart)) { return AREA_SPANISH_EXCLUSIVE_ECONOMIC_ZONE_MEDITERRANEAN_PART; }
1331
			else if (uuidArea.equals(ErmsTransformer.uuidEstonianExclusiveEconomicZone)) { return AREA_ESTONIAN_EXCLUSIVE_ECONOMIC_ZONE; }
1332
			else if (uuidArea.equals(ErmsTransformer.uuidCroatianExclusiveEconomicZone)) { return AREA_CROATIAN_EXCLUSIVE_ECONOMIC_ZONE; }
1333
			else if (uuidArea.equals(ErmsTransformer.uuidBalearSea)) { return AREA_BALEAR_SEA; }
1334
			else if (uuidArea.equals(ErmsTransformer.uuidTurkishExclusiveEconomicZone)) { return AREA_TURKISH_EXCLUSIVE_ECONOMIC_ZONE; }
1335
			else if (uuidArea.equals(ErmsTransformer.uuidDanishExclusiveEconomicZone)) { return AREA_DANISH_EXCLUSIVE_ECONOMIC_ZONE; }
1336

    
1337
			else if (uuidArea.equals(ErmsTransformer.uuidAfghanistan)) { return 297; }
1338
            else if (uuidArea.equals(ErmsTransformer.uuidAlboranSea)) { return 219; }
1339
			else if (uuidArea.equals(ErmsTransformer.uuidAlgeria)) { return 220; }
1340
			else if (uuidArea.equals(ErmsTransformer.uuidAngola)) { return 221; }
1341
			else if (uuidArea.equals(ErmsTransformer.uuidArcticOcean)) { return 296; }
1342
            else if (uuidArea.equals(ErmsTransformer.uuidAustralianExclusiveEconomicZone)) { return 222; }
1343
			else if (uuidArea.equals(ErmsTransformer.uuidBahamas)) { return 223; }
1344
			else if (uuidArea.equals(ErmsTransformer.uuidBalearicSea)) { return 224; }
1345
			else if (uuidArea.equals(ErmsTransformer.uuidBelgium)) { return 225; }
1346
			else if (uuidArea.equals(ErmsTransformer.uuidBelize)) { return 226; }
1347
			else if (uuidArea.equals(ErmsTransformer.uuidBrazil)) { return 227; }
1348
			else if (uuidArea.equals(ErmsTransformer.uuidBulgaria)) { return 228; }
1349
			else if (uuidArea.equals(ErmsTransformer.uuidCanada)) { return 229; }
1350
			else if (uuidArea.equals(ErmsTransformer.uuidCapeVerde)) { return 230; }
1351
			else if (uuidArea.equals(ErmsTransformer.uuidCapeVerdeanExclusiveEconomicZone)) { return 231; }
1352
			else if (uuidArea.equals(ErmsTransformer.uuidCaribbeanSea)) { return 210; }
1353
            else if (uuidArea.equals(ErmsTransformer.uuidChile)) { return 232; }
1354
			else if (uuidArea.equals(ErmsTransformer.uuidColombia)) { return 233; }
1355
			else if (uuidArea.equals(ErmsTransformer.uuidCostaRica)) { return 234; }
1356
			else if (uuidArea.equals(ErmsTransformer.uuidCroatia)) { return 235; }
1357
			else if (uuidArea.equals(ErmsTransformer.uuidCuba)) { return 236; }
1358
			else if (uuidArea.equals(ErmsTransformer.uuidDenmark)) { return 292; }
1359
            else if (uuidArea.equals(ErmsTransformer.uuidEgypt)) { return 237; }
1360
			else if (uuidArea.equals(ErmsTransformer.uuidEstonia)) { return 238; }
1361
			else if (uuidArea.equals(ErmsTransformer.uuidFaeroeExclusiveEconomicZone)) { return 239; }
1362
			else if (uuidArea.equals(ErmsTransformer.uuidFrance)) { return 240; }
1363
			else if (uuidArea.equals(ErmsTransformer.uuidGhana)) { return 241; }
1364
			else if (uuidArea.equals(ErmsTransformer.uuidGreece)) { return 242; }
1365
			else if (uuidArea.equals(ErmsTransformer.uuidGermany)) { return 298; }
1366
            else if (uuidArea.equals(ErmsTransformer.uuidGreekExclusiveEconomicZone)) { return AREA_GREEK_EXCLUSIVE_ECONOMIC_ZONE; }
1367
            else if (uuidArea.equals(ErmsTransformer.uuidGulfOfBothnia)) { return 243; }
1368
			else if (uuidArea.equals(ErmsTransformer.uuidGulfOfFinland)) { return 244; }
1369
			else if (uuidArea.equals(ErmsTransformer.uuidGulfOfGuinea)) { return 245; }
1370
			else if (uuidArea.equals(ErmsTransformer.uuidGulfOfMexico)) { return 246; }
1371
			else if (uuidArea.equals(ErmsTransformer.uuidGulfOfRiga)) { return 247; }
1372
			else if (uuidArea.equals(ErmsTransformer.uuidIceland)) { return 248; }
1373
			else if (uuidArea.equals(ErmsTransformer.uuidIonianSea)) { return 249; }
1374
			else if (uuidArea.equals(ErmsTransformer.uuidIreland)) { return 250; }
1375
            else if (uuidArea.equals(ErmsTransformer.uuidItaly)) { return 251; }
1376
			else if (uuidArea.equals(ErmsTransformer.uuidJamaica)) { return 252; }
1377
			else if (uuidArea.equals(ErmsTransformer.uuidKattegat)) { return 253; }
1378
			else if (uuidArea.equals(ErmsTransformer.uuidLevantineSea)) { return 254; }
1379
			else if (uuidArea.equals(ErmsTransformer.uuidLigurianSea)) { return 255; }
1380
			else if (uuidArea.equals(ErmsTransformer.uuidMalteseExclusiveEconomicZone)) { return 256; }
1381
			else if (uuidArea.equals(ErmsTransformer.uuidMauritanianExclusiveEconomicZone)) { return 257; }
1382
			else if (uuidArea.equals(ErmsTransformer.uuidMediterraneanSea_EasternBasin)) { return 258; }
1383
			else if (uuidArea.equals(ErmsTransformer.uuidMediterraneanSea_WesternBasin)) { return 259; }
1384
			else if (uuidArea.equals(ErmsTransformer.uuidMexico)) { return 260; }
1385
			else if (uuidArea.equals(ErmsTransformer.uuidMongolia)) { return 299; }
1386
            else if (uuidArea.equals(ErmsTransformer.uuidMorocco)) { return 261; }
1387
			else if (uuidArea.equals(ErmsTransformer.uuidNetherlands)) { return 262; }
1388
			else if (uuidArea.equals(ErmsTransformer.uuidNewZealand)) { return 263; }
1389
			else if (uuidArea.equals(ErmsTransformer.uuidNewZealandExclusiveEconomicZone)) { return 264; }
1390
			else if (uuidArea.equals(ErmsTransformer.uuidNorthAtlanticOcean)) { return 265; }
1391
			else if (uuidArea.equals(ErmsTransformer.uuidNorway)) { return 266; }
1392
			else if (uuidArea.equals(ErmsTransformer.uuidPanama)) { return 267; }
1393
			else if (uuidArea.equals(ErmsTransformer.uuidPanamanianExclusiveEconomicZone)) { return 268; }
1394
			else if (uuidArea.equals(ErmsTransformer.uuidPolishExclusiveEconomicZone)) { return 216; }
1395
            else if (uuidArea.equals(ErmsTransformer.uuidPortugal)) { return 269; }
1396
			else if (uuidArea.equals(ErmsTransformer.uuidPortugueseExclusiveEconomicZone_Azores)) { return 270; }
1397
			else if (uuidArea.equals(ErmsTransformer.uuidPortugueseExclusiveEconomicZone_Madeira)) { return 271; }
1398
			else if (uuidArea.equals(ErmsTransformer.uuidRedSea)) { return 272; }
1399
			else if (uuidArea.equals(ErmsTransformer.uuidRussianExclusiveEconomicZone)) { return 217; }
1400
			else if (uuidArea.equals(ErmsTransformer.uuidSeaOfMarmara)) { return 273; }
1401
			else if (uuidArea.equals(ErmsTransformer.uuidSenegaleseExclusiveEconomicZone)) { return 274; }
1402
			else if (uuidArea.equals(ErmsTransformer.uuidSingapore)) { return 275; }
1403
			else if (uuidArea.equals(ErmsTransformer.uuidSlovenianExclusiveEconomicZone)) { return 276; }
1404
			else if (uuidArea.equals(ErmsTransformer.uuidSouthAfrica)) { return 277; }
1405
			else if (uuidArea.equals(ErmsTransformer.uuidSouthAfricanExclusiveEconomicZone)) { return 278; }
1406
			else if (uuidArea.equals(ErmsTransformer.uuidSouthChinaSea)) { return 279; }
1407
			else if (uuidArea.equals(ErmsTransformer.uuidSpain)) { return 280; }
1408
			else if (uuidArea.equals(ErmsTransformer.uuidSpanishExclusiveEconomicZone_CanaryIslands)) { return 281; }
1409
			else if (uuidArea.equals(ErmsTransformer.uuidSriLankanExclusiveEconomicZone)) { return 282; }
1410
			else if (uuidArea.equals(ErmsTransformer.uuidStraitOfGibraltar)) { return 283; }
1411
			else if (uuidArea.equals(ErmsTransformer.uuidSweden)) { return 284; }
1412
			else if (uuidArea.equals(ErmsTransformer.uuidTunisia)) { return 285; }
1413
			else if (uuidArea.equals(ErmsTransformer.uuidTurkey)) { return 286; }
1414
			else if (uuidArea.equals(ErmsTransformer.uuidTyrrhenianSea)) { return 287; }
1415
			else if (uuidArea.equals(ErmsTransformer.uuidUnitedKingdom)) { return 288; }
1416
	        else if (uuidArea.equals(ErmsTransformer.uuidUnitedStates)) { return 291; }
1417
			else if (uuidArea.equals(ErmsTransformer.uuidUnitedStatesExclusiveEconomicZone_Alaska)) { return 289; }
1418
			else if (uuidArea.equals(ErmsTransformer.uuidVenezuela)) { return 290; }
1419

    
1420
			else {
1421
				logger.warn("Unknown ERMS Area: " + area.getTitleCache());
1422
			}
1423

    
1424
		} else {
1425
            logger.warn("Unknown NamedArea Area not in a known vocabulary: " + area.getTitleCache());
1426
        }
1427
		return null;
1428
	}
1429

    
1430

    
1431
	/**
1432
	 * Returns the PESI SourceUseId for a given CDM sourceUseId.
1433
	 * @param sourceUseId
1434
	 * @return
1435
	 */
1436
	public static Integer sourceUseIdSourceUseId(Integer sourceUseId) {
1437
		// TODO: CDM sourceUseId and PESI sourceUseId are equal for now.
1438
		Integer result = null;
1439
		switch (sourceUseId) {
1440
			case 3: return ADDITIONAL_SOURCE;
1441
			case 4: return SOURCE_OF_SYNONYMY;
1442
			case 8: return NOMENCLATURAL_REFERENCE;
1443
		}
1444
		return result;
1445
	}
1446

    
1447
	@Override
1448
	public Object getKeyByLanguage(Language language) throws UndefinedTransformerMethodException {
1449
		return language2LanguageId(language);
1450
	}
1451

    
1452
	@Override
1453
	public String getCacheByLanguage(Language language) throws UndefinedTransformerMethodException {
1454
		if (language == null){
1455
			return null;
1456
		}else{
1457
			return this.languageCacheMap.get(getKeyByLanguage(language));
1458
		}
1459
	}
1460

    
1461
	/**
1462
	 * Returns the identifier of the given Language.
1463
	 */
1464
	public static Integer language2LanguageId(Language language) {
1465
		if (language == null ) {
1466
			return null;
1467
		}
1468
		Integer result;
1469
		if ((result = languageCodeToKeyMap.get(language.getIso639_1())) != null){
1470
		    return result;
1471
		}else if ((result = languageCodeToKeyMap.get(language.getIdInVocabulary())) != null){
1472
            return result;
1473
        //Languages without ISO identifier
1474
		}else if (language.getUuid().equals(BerlinModelTransformer.uuidLangValencian)){return LANG_VALENCIAN;
1475
        }else if (language.getUuid().equals(BerlinModelTransformer.uuidLangHighAragonese)){return LANG_HIGH_ARAGONES;
1476
        }else if (language.getUuid().equals(BerlinModelTransformer.uuidLangMajorcan)){return LANG_MAJORCAN;
1477
        //FE wrong mapping in FE, Dutch_Middle should probably be Dutch
1478
        }else if (language.equals(Language.DUTCH_MIDDLE())){return LANG_DUTCH;
1479
        //some common names from ILDIS have no defined language
1480
        }else if (language.equals(Language.UNKNOWN_LANGUAGE())){return LANG_UNKNOWN;
1481
        } else {
1482
			logger.warn("Unknown Language: " + language.getTitleCache());
1483
			return null;
1484
		}
1485
	}
1486

    
1487
	/**
1488
	 * Returns the NodeCategoryCache for a given TextData.
1489
	 */
1490
	@Override
1491
    public String getCacheByFeature(Feature feature) {
1492
		if (feature == null){
1493
			return null;
1494
		}else{
1495
			return this.featureCacheMap.get(feature2NoteCategoryFk(feature));
1496
		}
1497
	}
1498

    
1499
	/**
1500
	 * Returns the NodeCategoryFk for a given TextData.
1501
	 */
1502
	public static Integer feature2NoteCategoryFk(Feature feature) {
1503
		if (feature == null) {
1504
			return null;
1505
		}
1506

    
1507
		if (feature.equals(Feature.DESCRIPTION())) {
1508
			return NoteCategory_description;
1509
		} else if (feature.equals(Feature.ECOLOGY())) {
1510
			return NoteCategory_ecology;
1511
		} else if (feature.equals(Feature.PHENOLOGY())) {
1512
			return NoteCategory_phenology;
1513
		} else if (feature.equals(Feature.DIAGNOSIS())) {
1514
            return NoteCategory_Diagnosis;
1515
        } else if (feature.equals(Feature.COMMON_NAME())) {
1516
			return NoteCategory_Common_names;
1517
		} else if (feature.equals(Feature.OCCURRENCE())) {
1518
			return NoteCategory_Occurrence;
1519
		} else if (feature.equals(Feature.DISTRIBUTION())) {
1520
			return NoteCategory_Distribution;
1521
		} else if (feature.equals(Feature.ETYMOLOGY())) {
1522
            return NoteCategory_Etymology;
1523
        } else if (feature.getUuid().equals(ErmsTransformer.uuidAcknowledgments)){
1524
		    return NoteCategory_Acknowledgments;
1525
		} else if (feature.getUuid().equals(ErmsTransformer.uuidAdditionalinformation)) {
1526
		    return NoteCategory_Additional_information;
1527
		} else if (feature.getUuid().equals(ErmsTransformer.uuidAlienSpecies)) {
1528
		    return NoteCategory_Alien_Species;
1529
		} else if (feature.getUuid().equals(ErmsTransformer.uuidAuthority)) {
1530
		    return NoteCategory_Authority;
1531
		} else if (feature.getUuid().equals(ErmsTransformer.uuidDepthRange)) {
1532
		    return NoteCategory_Depth_Range;
1533
		} else if (feature.getUuid().equals(ErmsTransformer.uuidBiology)) {
1534
		    return NoteCategory_Biology;
1535
		} else if (feature.getUuid().equals(ErmsTransformer.uuidClassification)) {
1536
		    return NoteCategory_Classification;
1537
		} else if (feature.getUuid().equals(ErmsTransformer.uuidDiet)) {
1538
		    return NoteCategory_Diet;
1539
		} else if (feature.getUuid().equals(ErmsTransformer.uuidDimensions)) {
1540
		    return NoteCategory_Dimensions;
1541
		} else if (feature.getUuid().equals(ErmsTransformer.uuidEditorsComment)) {
1542
		    return NoteCategory_Editors_Comment;
1543
		} else if (feature.getUuid().equals(ErmsTransformer.uuidEnvironment)) {
1544
		    return NoteCategory_Environment;
1545
		} else if (feature.getUuid().equals(ErmsTransformer.uuidFossilRange)) {
1546
		    return NoteCategory_Fossil_Range;
1547
		} else if (feature.getUuid().equals(ErmsTransformer.uuidGrammaticalGender)) {
1548
		    return NoteCategory_Grammatical_Gender;
1549
		} else if (feature.getUuid().equals(ErmsTransformer.uuidHabitat)) {
1550
		    return NoteCategory_Habitat;
1551
		} else if (feature.getUuid().equals(ErmsTransformer.uuidHomonymy)) {
1552
		    return NoteCategory_Homonymy;
1553
		} else if (feature.getUuid().equals(ErmsTransformer.uuidIdentification)) {
1554
		    return NoteCategory_Identification;
1555
		} else if (feature.getUuid().equals(ErmsTransformer.uuidIntroducedSpeciesRemark)) {
1556
		    return NoteCategory_Introduced_Species_Remark;
1557
		} else if (feature.getUuid().equals(ErmsTransformer.uuidMorphology)) {
1558
		    return NoteCategory_Morphology;
1559
		} else if (feature.getUuid().equals(ErmsTransformer.uuidNewCombination)) {
1560
		    return NoteCategory_New_Combination;
1561
		} else if (feature.getUuid().equals(ErmsTransformer.uuidNomenclature)) {
1562
		    return NoteCategory_Nomenclature;
1563
		} else if (feature.getUuid().equals(ErmsTransformer.uuidNote)){
1564
		    return NoteCategory_Note;
1565
		} else if (feature.getUuid().equals(ErmsTransformer.uuidOriginalCombination)) {
1566
		    return NoteCategory_Original_Combination;
1567
		} else if (feature.getUuid().equals(ErmsTransformer.uuidOriginalDescription)) {
1568
		    return NoteCategory_Original_Description;
1569
		} else if (feature.getUuid().equals(ErmsTransformer.uuidOriginalpublication)) {
1570
		    return NoteCategory_Original_publication;
1571
		} else if (feature.getUuid().equals(ErmsTransformer.uuidPublicationdate)) {
1572
            return NoteCategory_Publication_date;
1573
        } else if (feature.getUuid().equals(ErmsTransformer.uuidRank)) {
1574
		    return NoteCategory_Rank;
1575
		} else if (feature.getUuid().equals(ErmsTransformer.uuidRemark)) {
1576
		    return NoteCategory_Remark;
1577
		} else if (feature.getUuid().equals(ErmsTransformer.uuidReproduction)) {
1578
		    return NoteCategory_Reproduction;
1579
		} else if (feature.getUuid().equals(ErmsTransformer.uuidSpelling)) {
1580
		    return NoteCategory_Spelling;
1581
		} else if (feature.getUuid().equals(ErmsTransformer.uuidSpecimen)) {
1582
            return NoteCategory_Specimen;
1583
        } else if (feature.getUuid().equals(ErmsTransformer.uuidStatus)){
1584
		    return NoteCategory_Status;
1585
		} else if (feature.getUuid().equals(ErmsTransformer.uuidSynonymy)) {
1586
		    return NoteCategory_Synonymy;
1587
		} else if (feature.getUuid().equals(ErmsTransformer.uuidSyntype)) {
1588
		    return NoteCategory_Syntype;
1589
		} else if (feature.getUuid().equals(ErmsTransformer.uuidSystematics)) {
1590
		    return NoteCategory_Systematics;
1591
		} else if (feature.getUuid().equals(ErmsTransformer.uuidTaxonomicRemarks)) {
1592
			return NoteCategory_Taxonomic_Remarks;
1593
		} else if (feature.getUuid().equals(ErmsTransformer.uuidTaxonomy)) {
1594
			return NoteCategory_Taxonomy;
1595
		} else if (feature.getUuid().equals(ErmsTransformer.uuidTaxonomicstatus)) {
1596
			return NoteCategory_Taxonomic_status;
1597
		} else if (feature.getUuid().equals(ErmsTransformer.uuidTypelocality)) {
1598
		    return NoteCategory_Type_locality;
1599
		} else if (feature.getUuid().equals(ErmsTransformer.uuidTypeMaterial)) {
1600
		    return NoteCategory_Type_Material;
1601
		} else if (feature.getUuid().equals(ErmsTransformer.uuidTypeSpecimen)) {
1602
		    return NoteCategory_Type_Specimen;
1603
        } else if (feature.getUuid().equals(ErmsTransformer.uuidTypespecies)) {
1604
            return NoteCategory_Type_species;
1605
		} else if (feature.getUuid().equals(ErmsTransformer.uuidTaxonomicRemark)) {
1606
			return NoteCategory_Taxonomic_Remark;
1607
		} else if (feature.getUuid().equals(ErmsTransformer.uuidValidity)) {
1608
			return NoteCategory_Validity;
1609

    
1610
//        } else if (feature.getUuid().equals(ErmsTransformer.uuidSourceOfSynonymy)) {
1611
//		    logger.debug("Source of synonymy not yet handled");
1612
//		    return null;
1613
		} else if (feature.equals(Feature.CITATION())) {
1614
			return null;  //citations are handled differently
1615
		} else if (feature.getUuid().equals(BerlinModelTransformer.uuidFeatureMaps)){
1616
			return NoteCategory_Link_to_maps;
1617
		} else if (feature.getUuid().equals(BerlinModelTransformer.uuidFeatureUse)){
1618
			return NoteCategory_Use;
1619
		} else if (feature.getUuid().equals(BerlinModelTransformer.uuidFeatureComments)){
1620
			return NoteCategory_Comments;
1621
		} else if (feature.getUuid().equals(BerlinModelTransformer.uuidFeatureConservationStatus)){
1622
			return NoteCategory_Conservation_Status;
1623

    
1624
		//E+M
1625
		} else if (feature.getUuid().equals(BerlinModelTransformer.uuidFeatureDistrEM)){
1626
			return NoteCategory_general_distribution_euromed;
1627
		} else if (feature.getUuid().equals(BerlinModelTransformer.uuidFeatureDistrWorld)){
1628
			return NoteCategory_general_distribution_world;
1629
		} else if (feature.getUuid().equals(BerlinModelTransformer.uuidFeatureEditorBrackets)){
1630
			return NoteCategory_Editor_Brackets;
1631
		} else if (feature.getUuid().equals(BerlinModelTransformer.uuidFeatureEditorParenthesis)){
1632
			return NoteCategory_Editor_Parenthesis;
1633
		} else if (feature.getUuid().equals(BerlinModelTransformer.uuidFeatureInedited)){
1634
			return NoteCategory_Inedited;
1635
		} else if (feature.getUuid().equals(BerlinModelTransformer.uuidFeatureCommentsEditing)){
1636
			return NoteCategory_Comments_on_editing_process;
1637

    
1638
		}else{
1639
			logger.warn("Unhandled Feature: " + feature.getTitleCache());
1640
			return null;
1641
		}
1642
	}
1643

    
1644
	/**
1645
	 * Returns the string representation for a given rank.
1646
	 */
1647
	public String getCacheByRankAndKingdom(Rank rank, Integer pesiKingdomId) {
1648
		if (rank == null){
1649
			return null;
1650
		}else if (pesiKingdomId == null && rank.equals(Rank.DOMAIN())){  //might be Superdomain in future
1651
		    return this.rankCacheMap.get(0).get(0);
1652
		}else{
1653
		    Map<Integer, String> rankMap = this.rankCacheMap.get(pesiKingdomId);
1654
		    if (rankMap != null){
1655
		        return rankMap.get(rank2RankId(rank, pesiKingdomId));
1656
		    }else{
1657
		        logger.warn("RankCacheMap is null for " + pesiKingdomId);
1658
		        return null;
1659
		    }
1660
		}
1661
	}
1662

    
1663
	/**
1664
	 * Returns the identifier of a PESI specific kingdom for a given CDM nomenclatural code.
1665
	 * @param nomenclaturalCode
1666
	 * @return KINGDOM_ANIMALIA for NomenclaturalCode.ICZN, KINGDOM_PLANTAE for NomenclaturalCode.ICNAFP
1667
	 */
1668
	public static Integer nomenclaturalCode2Kingdom(NomenclaturalCode nomenclaturalCode) {
1669
		Integer result = null;
1670
		// TODO: This needs to be refined. For now we differentiate between animalia, plantae and bacteria only.
1671
		if (nomenclaturalCode.equals(NomenclaturalCode.ICZN)) {
1672
			result = KINGDOM_ANIMALIA;
1673
		} else if (nomenclaturalCode.equals(NomenclaturalCode.ICNAFP)) {
1674
			result = KINGDOM_PLANTAE;
1675
		} else if (nomenclaturalCode.equals(NomenclaturalCode.ICNB)) {
1676
			result = KINGDOM_BACTERIA;
1677
//		} else if (nomenclaturalCode.equals(NomenclaturalCode.)) { // Biota
1678
//			result =
1679
		} else {
1680
 			logger.error("NomenclaturalCode not yet considered: " + nomenclaturalCode.getUuid() + " (" +  nomenclaturalCode.getTitleCache() + ")");
1681
		}
1682
		return result;
1683
	}
1684

    
1685
	/**
1686
	 * Returns the RankId for a Rank.
1687
	 * @param rank
1688
	 * @return
1689
	 */
1690
	public static Integer rank2RankId (Rank rank, Integer pesiKingdomId) {
1691
		Integer result = null;
1692
		if (rank == null) {
1693
			return null;
1694
		}else if (rank.equals(Rank.DOMAIN())){
1695
		    return KINGDOM_NULL;
1696
		}else if (rank.equals(Rank.KINGDOM())) {
1697
            result = Kingdom;
1698
        }else if (rank.equals(Rank.SUBKINGDOM())) {
1699
            result = Subkingdom;
1700
        } else if (rank.equals(Rank.PHYLUM())) {
1701
            result = Phylum;
1702
        }else if (rank.equals(Rank.DIVISION())) {  //same as Phylum
1703
            result = Division;
1704
        }else if (rank.equals(Rank.SUBPHYLUM())) {
1705
            result = Subphylum;
1706
        }else if (rank.equals(Rank.SUBDIVISION())) { //same as Subphylum
1707
            result = Subdivision;
1708
        }else if (rank.equals(Rank.CLASS())) {
1709
            result = Class;
1710
        } else if (rank.equals(Rank.SUBCLASS())) {
1711
            result = Subclass;
1712
        } else if (rank.equals(Rank.ORDER())) {
1713
            result = Order;
1714
        } else if (rank.equals(Rank.SUBORDER())) {
1715
            result = Suborder;
1716
        } else if (rank.equals(Rank.FAMILY())) {
1717
            result = Family;
1718
        } else if (rank.equals(Rank.SUBFAMILY())) {
1719
            result = Subfamily;
1720
        } else if (rank.equals(Rank.TRIBE())) {
1721
            result = Tribe;
1722
        } else if (rank.equals(Rank.SUBTRIBE())) {
1723
            result = Subtribe;
1724
        } else if (rank.equals(Rank.GENUS())) {
1725
            result = Genus;
1726
        } else if (rank.equals(Rank.SUBGENUS())) {
1727
            result = Subgenus;
1728
        } else if (rank.equals(Rank.SPECIES())) {
1729
            result = Species;
1730
        } else if (rank.equals(Rank.SUBSPECIES())) {
1731
            result = Subspecies;
1732
        } else if (rank.equals(Rank.VARIETY())) {
1733
            result = Variety;
1734
        } else if (rank.equals(Rank.FORM())) {
1735
            result = Forma;
1736
        } else
1737

    
1738
		// We differentiate between Animalia and Plantae only for now.
1739
		if (pesiKingdomId != null && pesiKingdomId.intValue() == KINGDOM_ANIMALIA) {
1740
			if (rank.equals(Rank.INFRAKINGDOM())) {result = Infrakingdom;
1741
            } else if (rank.equals(Rank.SUPERPHYLUM())) {result = Superphylum;
1742
			} else if (rank.equals(Rank.INFRAPHYLUM())) {result = Infraphylum;
1743
			} else if (rank.equals(Rank.SUPERCLASS())) {result = Superclass;
1744
			} else if (rank.equals(Rank.INFRACLASS())) {result = Infraclass;
1745
            } else if (rank.getUuid().equals(ErmsTransformer.uuidRankSubterclass)) {result = Subterclass;
1746
			} else if (rank.equals(Rank.SUPERORDER())) {result = Superorder;
1747
			} else if (rank.equals(Rank.INFRAORDER())) {result = Infraorder;
1748
			} else if (rank.getUuid().equals(ErmsTransformer.uuidRankParvorder)) {result = Parvorder;
1749
            } else if (rank.equals(Rank.SECTION_ZOOLOGY())) {result = Animalia_Section;
1750
			} else if (rank.equals(Rank.SUBSECTION_ZOOLOGY())) {result = Animalia_Subsection;
1751
			} else if (rank.equals(Rank.SUPERFAMILY())) {result = Superfamily;
1752
			} else if (rank.equals(Rank.NATIO())) {result = Natio;
1753
			} else if (rank.equals(Rank.SUBVARIETY())) {result = Subvariety;
1754
			} else if (rank.equals(Rank.SUBFORM())) {result = Subform;
1755
            } else {
1756
				//TODO Exception
1757
				logger.warn("Rank for Kingdom Animalia not yet supported in CDM: "+ rank.getLabel());
1758
				return null;
1759
			}
1760
		} else if (pesiKingdomId != null && pesiKingdomId.intValue() == KINGDOM_PLANTAE) {
1761
			if (rank.equals(Rank.INFRAKINGDOM())) {result = Infrakingdom;
1762
            } else if (rank.equals(Rank.SUPERORDER())) {result = Superorder;
1763
			} else if (rank.equals(Rank.SECTION_BOTANY())) {result = Bot_Section;
1764
			} else if (rank.equals(Rank.SUBSECTION_BOTANY())) {result = Bot_Subsection;
1765
			} else if (rank.equals(Rank.SERIES())) {result = Series;
1766
			} else if (rank.equals(Rank.SUBSERIES())) {result = Subseries;
1767
			} else if (rank.equals(Rank.SPECIESAGGREGATE() )) {result = Aggregate;
1768
			} else if (rank.equals(Rank.SPECIESGROUP())) {
1769
				logger.warn("Rank Species Group not yet implemented");
1770
				result = null;
1771
			} else if (rank.getUuid().equals(Rank.uuidCollSpecies)) {result = Coll_Species;
1772
			} else if (rank.equals(Rank.GREX())) {result = Grex;
1773
			} else if (rank.getUuid().equals(Rank.uuidProles) ) {result = Proles;
1774
			} else if (rank.getUuid().equals(Rank.uuidRace)) {result = Race;
1775
			} else if (rank.equals(Rank.CONVAR())) {result = Convarietas;
1776
			} else if (rank.equals(Rank.SUBVARIETY())) {result = Subvariety;
1777
			} else if (rank.equals(Rank.SUBFORM())) {result = Subform;
1778
			} else if (rank.equals(Rank.SPECIALFORM())) {result = Forma_spec;
1779
			} else if (rank.equals(Rank.INFRAGENERICTAXON())) {result = Taxa_infragen;
1780
			} else if (rank.equals(Rank.INFRASPECIFICTAXON())) {result = Taxa_infraspec;
1781
			} else {
1782
				//TODO Exception
1783
				logger.warn("Rank for Kingdom Plantae not yet supported in CDM: "+ rank.getLabel());
1784
				return null;
1785
			}
1786
		} else if (pesiKingdomId != null && pesiKingdomId.intValue() == KINGDOM_FUNGI) {
1787
		    if (rank.equals(Rank.SECTION_BOTANY())) { result = Bot_Section;
1788
		    } else if (rank.equals(Rank.SUBSECTION_BOTANY())) { result = Bot_Subsection;
1789
		    } else if (rank.equals(Rank.SUBVARIETY())) { result = Subvariety;
1790
		    } else if (rank.equals(Rank.SUBFORM())) { result = Subform;
1791
		    } else if (rank.equals(Rank.SPECIALFORM())) {result = Forma_spec;
1792
		    } else {
1793
		        //TODO Exception
1794
		        logger.warn("Rank for Kingdom Fungi not yet supported in CDM: "+ rank.getLabel());
1795
		        return null;
1796
		    }
1797
        }else if (pesiKingdomId != null && pesiKingdomId.intValue() == KINGDOM_PROTOZOA) {
1798
            if (rank.equals(Rank.INFRAKINGDOM())) { result = Infrakingdom;
1799
            } else if (rank.equals(Rank.SUPERCLASS())) { result = Superclass;
1800
            } else if (rank.equals(Rank.INFRACLASS())) { result = Infraclass;
1801
            } else if (rank.equals(Rank.SUPERORDER())) { result = Superorder;
1802
            } else if (rank.equals(Rank.INFRAORDER())) { result = Infraorder;
1803
            } else if (rank.equals(Rank.SUPERFAMILY())) { result = Superfamily;
1804
            } else if (rank.equals(Rank.SPECIALFORM())) {result = Forma_spec;
1805
            } else {
1806
                //TODO Exception
1807
                logger.warn("Rank for Kingdom Protozoa not yet supported in CDM: "+ rank.getLabel());
1808
                return null;
1809
            }
1810
        } else if (pesiKingdomId != null && pesiKingdomId.intValue() == KINGDOM_BACTERIA) {
1811
            if (rank.equals(Rank.SUPERCLASS())) { result = Superclass;
1812
            } else if (rank.equals(Rank.INFRACLASS())) { result = Infraclass;
1813
            } else if (rank.equals(Rank.SUPERORDER())) { result = Superorder;
1814
            } else if (rank.equals(Rank.INFRAORDER())) { result = Infraorder;
1815
            } else if (rank.equals(Rank.SUPERFAMILY())) { result = Superfamily;
1816
            } else {
1817
                //TODO Exception
1818
                logger.warn("Rank for Kingdom Bacteria not yet supported in CDM: "+ rank.getLabel());
1819
                return null;
1820
            }
1821
        }else if (pesiKingdomId != null && pesiKingdomId.intValue() == KINGDOM_CHROMISTA) {
1822
            if (rank.equals(Rank.INFRAKINGDOM())) { result = Infrakingdom;
1823
            } else if (rank.equals(Rank.INFRAPHYLUM())) { result = Infraphylum;
1824
            } else if (rank.equals(Rank.SUPERCLASS())) { result = Superclass;
1825
            } else if (rank.equals(Rank.INFRACLASS())) { result = Infraclass;
1826
            } else if (rank.equals(Rank.SUPERORDER())) { result = Superorder;
1827
            } else if (rank.equals(Rank.INFRAORDER())) { result = Infraorder;
1828
            } else if (rank.equals(Rank.SUPERFAMILY())) { result = Superfamily;
1829
            } else if (rank.equals(Rank.SECTION_BOTANY())) { result = Bot_Section;
1830
            } else if (rank.equals(Rank.SUBSECTION_BOTANY())) { result = Bot_Subsection;
1831
            } else if (rank.equals(Rank.SUBVARIETY())) { result = Subvariety;
1832
            } else if (rank.equals(Rank.SPECIALFORM())) {result = Forma_spec;
1833
            } else {
1834
                //TODO Exception
1835
                logger.warn("Rank for Kingdom Chromista not yet supported in CDM: "+ rank.getLabel());
1836
                return null;
1837
            }
1838
        }else{
1839
			//TODO Exception
1840
			logger.warn("Kingdom not yet supported in CDM: "+ pesiKingdomId);
1841
			return null;
1842
		}
1843
		return result;
1844
	}
1845

    
1846
	public static Integer nameTypeDesignationStatus2TypeDesignationStatusId(NameTypeDesignationStatus nameTypeDesignationStatus) {
1847
		if (nameTypeDesignationStatus == null) {
1848
			return null;
1849
		}
1850
		if (nameTypeDesignationStatus.equals(NameTypeDesignationStatus.ORIGINAL_DESIGNATION())) {
1851
			return TYPE_BY_ORIGINAL_DESIGNATION;
1852
		} else if (nameTypeDesignationStatus.equals(NameTypeDesignationStatus.SUBSEQUENT_DESIGNATION())) {
1853
			return TYPE_BY_SUBSEQUENT_DESIGNATION;
1854
		} else if (nameTypeDesignationStatus.equals(NameTypeDesignationStatus.MONOTYPY())) {
1855
			return TYPE_BY_MONOTYPY;
1856
		} else {
1857
			//TODO Figure out a way to handle this gracefully.
1858
			logger.warn("Name Type Designation Status not yet supported in PESI: "+ nameTypeDesignationStatus.getLabel());
1859
			return null;
1860
		}
1861

    
1862
	}
1863

    
1864
	public static String nameTypeDesignationStatus2TypeDesignationStatusCache(NameTypeDesignationStatus nameTypeDesignationStatus) {
1865
		if (nameTypeDesignationStatus == null) {
1866
			return null;
1867
		}
1868
		if (nameTypeDesignationStatus.equals(NameTypeDesignationStatus.ORIGINAL_DESIGNATION())) {
1869
			return TYPE_STR_BY_ORIGINAL_DESIGNATION;
1870
		} else if (nameTypeDesignationStatus.equals(NameTypeDesignationStatus.SUBSEQUENT_DESIGNATION())) {
1871
			return TYPE_STR_BY_SUBSEQUENT_DESIGNATION;
1872
		} else if (nameTypeDesignationStatus.equals(NameTypeDesignationStatus.MONOTYPY())) {
1873
			return TYPE_STR_BY_MONOTYPY;
1874
		} else {
1875
			//TODO Figure out a way to handle this gracefully.
1876
			logger.warn("Name Type Designation Status not yet supported in PESI: "+ nameTypeDesignationStatus.getLabel());
1877
			return null;
1878
		}
1879
	}
1880

    
1881
	/**
1882
	 * @see PesiTaxonExport#doPhaseUpdates(PesiExportState) for further transformation
1883
	 * @param taxonBase
1884
	 * @return
1885
	 */
1886
	public static Integer taxonBase2statusFk (TaxonBase<?> taxonBase){
1887
		if (taxonBase == null){
1888
			return null;
1889
		}else if(!taxonBase.getExtensions(ErmsTransformer.uuidPesiTaxonStatus).isEmpty()){
1890
		    return taxonStatusByErmsStatus(taxonBase.getExtensions(ErmsTransformer.uuidPesiTaxonStatus));
1891
		}else{
1892
		    if (taxonBase.isInstanceOf(Synonym.class)){
1893
    		    Synonym synonym = CdmBase.deproxy(taxonBase, Synonym.class);
1894
    		    if (taxonBase2statusFk(synonym.getAcceptedTaxon())== T_STATUS_NOT_ACCEPTED_VALUELESS ){
1895
    		        return T_STATUS_NOT_ACCEPTED_VALUELESS;
1896
    		    }else{
1897
    		        return T_STATUS_SYNONYM;
1898
    		    }
1899
		    }else if (taxonBase.isInstanceOf(Taxon.class)){
1900
    			Taxon taxon = CdmBase.deproxy(taxonBase, Taxon.class);
1901
    			Set<TaxonRelationship> rels = taxon.getRelationsFromThisTaxon();
1902
    			Set<TaxonNode> nodes = taxon.getTaxonNodes();
1903
    			if (!rels.isEmpty() && !nodes.isEmpty()){
1904
    			    logger.warn("Taxon has relations and parent. This is not expected in E+M, but maybe possible in ERMS. Check if taxon status is correct.");
1905
    			}else if (rels.isEmpty() && nodes.isEmpty()){
1906
                    logger.warn("Taxon has neither relations nor parent. This is not expected. Check if taxon status is correct.");
1907
                }
1908
    			if (!rels.isEmpty()){
1909
    			    //we expect all rels to have same type, maybe not true
1910
    			    UUID relTypeUuid = rels.iterator().next().getType().getUuid();
1911
    			    //E+M
1912
    			    if (TaxonRelationshipType.proParteUuids().contains(relTypeUuid)){
1913
    	                return T_STATUS_PRO_PARTE_SYN;
1914
    	            }else if (TaxonRelationshipType.partialUuids().contains(relTypeUuid)){
1915
    	                return T_STATUS_PARTIAL_SYN;
1916
    	            }else if (TaxonRelationshipType.misappliedNameUuids().contains(relTypeUuid)){
1917
    	                return T_STATUS_SYNONYM;  //no explicit MAN status exists in PESI
1918
    	            }
1919
    			    //ERMS
1920
    	            else if (TaxonRelationshipType.pseudoTaxonUuids().contains(relTypeUuid)){
1921
    	                return T_STATUS_SYNONYM;
1922
    	            }
1923
    			}
1924
    			if (!nodes.isEmpty()){
1925
    			    TaxonNode parentNode = nodes.iterator().next().getParent();
1926
    			    if (parentNode.getTaxon() != null && !parentNode.getTaxon().isPublish()){
1927
    			        if (parentNode.getTaxon().getUuid().equals(uuidTaxonValuelessEuroMed) ){
1928
    			            return T_STATUS_NOT_ACCEPTED_VALUELESS;
1929
    			        }
1930
    			    }else{
1931
    			        if (taxon.isDoubtful()){
1932
    			            return T_STATUS_UNRESOLVED;
1933
    			        }else{
1934
    			            return T_STATUS_ACCEPTED;
1935
    			        }
1936
    			    }
1937
    	        }
1938
    			logger.error("Taxon status could not be defined. This should not happen: " + taxonBase.getTitleCache() );
1939
    			return T_STATUS_UNRESOLVED;
1940
    		}else{
1941
    		    logger.warn("Unresolved taxon status, neither taxon nor synonym, this should not happen");
1942
    			return T_STATUS_UNRESOLVED;
1943
    		}
1944
    		//TODO
1945
    //		public static int T_STATUS_ORPHANED = 6;  //never used in SQL import
1946
		}
1947
	}
1948

    
1949
    private static Integer taxonStatusByErmsStatus(Set<String> extensions) {
1950
        //Note: status extensions should only be used during ERMS import
1951
        //      if the status can not be derived from ordinary CDM status handling (Taxon, Synonym, ProParte, doubtful, ...)
1952
        // see ErmsTaxonImport.handleNotAcceptedTaxonStatus
1953
        if (extensions.size()>1){
1954
            logger.warn("More than 1 ERMS status available. This should not happen.");
1955
        }
1956
        String statusStr = extensions.iterator().next();
1957
        Integer status = Integer.valueOf(statusStr);
1958
        return status;
1959
    }
1960

    
1961
    /**
1962
	 * Returns the {@link SourceCategory SourceCategory} representation of the given {@link ReferenceType ReferenceType} in PESI.
1963
	 * @param reference The {@link Reference Reference}.
1964
	 * @return The {@link SourceCategory SourceCategory} representation in PESI.
1965
	 */
1966
	public static Integer reference2SourceCategoryFK(Reference reference) {
1967
		if (reference == null){
1968
			return null;
1969
		} else if (reference.getType().equals(ReferenceType.Article)) {
1970
			return REF_ARTICLE_IN_PERIODICAL;
1971
		} else if (reference.getType().equals(ReferenceType.Book)) {
1972
			return REF_BOOK;
1973
		} else if (reference.getType().equals(ReferenceType.BookSection)) {
1974
			return REF_PART_OF_OTHER;
1975
		} else if (reference.getType().equals(ReferenceType.Section)) {
1976
			return REF_PART_OF_OTHER;
1977
		} else if (reference.getType().equals(ReferenceType.Database)) {
1978
			return REF_DATABASE;
1979
		} else if (reference.getType().equals(ReferenceType.WebPage)) {
1980
			return REF_WEBSITE;
1981
		} else if (reference.getType().equals(ReferenceType.CdDvd)) {
1982
			return REF_NOT_APPLICABLE;
1983
		} else if (reference.getType().equals(ReferenceType.Journal)) {
1984
			return REF_JOURNAL;
1985
		} else if (reference.getType().equals(ReferenceType.PrintSeries)) {
1986
			return REF_PUBLICATION;  //?
1987
		} else if (reference.getType().equals(ReferenceType.Proceedings)) {
1988
			return REF_PUBLICATION;  //?
1989
		} else if (reference.getType().equals(ReferenceType.Patent)) {
1990
			return REF_NOT_APPLICABLE;
1991
		} else if (reference.getType().equals(ReferenceType.PersonalCommunication)) {
1992
			return REF_INFORMAL;
1993
		} else if (reference.getType().equals(ReferenceType.Report)) {
1994
			return REF_NOT_APPLICABLE;
1995
		} else if (reference.getType().equals(ReferenceType.Thesis)) {
1996
			return REF_NOT_APPLICABLE;
1997
		} else if (reference.getType().equals(ReferenceType.Generic)) {
1998
            if(reference.hasMarker(ErmsTransformer.uuidMarkerRefPublication, true)){
1999
                return REF_PUBLICATION;
2000
            }else if(reference.hasMarker(ErmsTransformer.uuidMarkerRefInformal, true)){
2001
                return REF_INFORMAL;
2002
            }else if(reference.hasMarker(ErmsTransformer.uuidMarkerRefTypeI, true)){
2003
                logger.warn("ERMS ref type 'i' is not yet correctly matched to PESI");
2004
                return REF_INFORMAL;
2005
            }else{
2006
                return REF_UNRESOLVED;
2007
            }
2008
        } else {
2009
			logger.warn("Reference type not yet supported in PESI: "+ reference.getType());
2010
			return null;
2011
		}
2012
	}
2013

    
2014
	/**
2015
	 * Returns the {@link SourceCategoryCache SourceCategoryCache}.
2016
	 * @param reference The {@link Reference Reference}.
2017
	 * @return The {@link SourceCategoryCache SourceCategoryCache}.
2018
	 */
2019
	public String getCacheByReference(Reference reference) {
2020
		if (reference == null){
2021
			return null;
2022
		}else{
2023
			return this.sourceCategoryCacheMap.get(reference2SourceCategoryFK(reference));
2024
		}
2025
	}
2026

    
2027
	@Override
2028
    public String getCacheByNomStatus(NomenclaturalStatusType status) {
2029
		if (status == null){
2030
			return null;
2031
		}else{
2032
			return this.nameStatusCacheMap.get(nomStatus2nomStatusFk(status));
2033
		}
2034
	}
2035

    
2036
	public static Integer nomStatus2nomStatusFk (NomenclaturalStatusType status){
2037
		if (status == null){
2038
			return null;
2039
		}
2040
		if (status.equals(NomenclaturalStatusType.INVALID())) {return NAME_ST_NOM_INVAL;
2041
		}else if (status.equals(NomenclaturalStatusType.ILLEGITIMATE())) {return NAME_ST_NOM_ILLEG;
2042
		}else if (status.equals(NomenclaturalStatusType.NUDUM())) {return NAME_ST_NOM_NUD;
2043
		}else if (status.equals(NomenclaturalStatusType.REJECTED())) {return NAME_ST_NOM_REJ;
2044
		}else if (status.equals(NomenclaturalStatusType.REJECTED_PROP())) {return NAME_ST_NOM_REJ_PROP;
2045
		}else if (status.equals(NomenclaturalStatusType.UTIQUE_REJECTED())) {return NAME_ST_NOM_UTIQUE_REJ;
2046
		}else if (status.equals(NomenclaturalStatusType.UTIQUE_REJECTED_PROP())) {return NAME_ST_NOM_UTIQUE_REJ_PROP;
2047
		}else if (status.equals(NomenclaturalStatusType.CONSERVED())) {return NAME_ST_NOM_CONS;
2048

    
2049
		}else if (status.equals(NomenclaturalStatusType.CONSERVED_PROP())) {return NAME_ST_NOM_CONS_PROP;
2050
		}else if (status.equals(NomenclaturalStatusType.ORTHOGRAPHY_CONSERVED())) {return NAME_ST_ORTH_CONS;
2051
		}else if (status.equals(NomenclaturalStatusType.ORTHOGRAPHY_CONSERVED_PROP())) {return NAME_ST_ORTH_CONS_PROP;
2052
		}else if (status.equals(NomenclaturalStatusType.SUPERFLUOUS())) {return NAME_ST_NOM_SUPERFL;
2053
		}else if (status.equals(NomenclaturalStatusType.AMBIGUOUS())) {return NAME_ST_NOM_AMBIG;
2054
		}else if (status.equals(NomenclaturalStatusType.PROVISIONAL())) {return NAME_ST_NOM_PROVIS;
2055
		}else if (status.equals(NomenclaturalStatusType.DOUBTFUL())) {return NAME_ST_NOM_DUB;
2056
		}else if (status.equals(NomenclaturalStatusType.NOVUM())) {return NAME_ST_NOM_NOV;
2057

    
2058
		}else if (status.equals(NomenclaturalStatusType.CONFUSUM())) {return NAME_ST_NOM_CONFUS;
2059
		}else if (status.equals(NomenclaturalStatusType.ALTERNATIVE())) {return NAME_ST_NOM_ALTERN;
2060
		}else if (status.equals(NomenclaturalStatusType.COMBINATION_INVALID())) {return NAME_ST_COMB_INVAL;
2061
		}else if (status.equals(NomenclaturalStatusType.LEGITIMATE())) {return NAME_ST_LEGITIMATE;
2062

    
2063
		}else if (status.getUuid().equals(BerlinModelTransformer.uuidNomStatusCombIned)||
2064
		        //FIXME deduplicate COMB_NOV
2065
		        status.equals(NomenclaturalStatusType.COMB_NOV())) {return NAME_ST_COMB_INED;
2066
		}else if (status.getUuid().equals(BerlinModelTransformer.uuidNomStatusNomOrthCons)) {return NAME_ST_NOM_AND_ORTH_CONS;
2067
		}else if (status.getUuid().equals(BerlinModelTransformer.uuidNomStatusSpNovIned)) {return NAME_ST_SP_NOV_INED;
2068

    
2069

    
2070
		// The following are non-existent in CDM
2071
//		}else if (status.equals(NomenclaturalStatusType.)) {return NAME_ST_COMB_AND_STAT_INED;
2072
//		}else if (status.equals(NomenclaturalStatusType.)) {return NAME_ST_NOM_NOV_INED;
2073
		}else if (status.getUuid().equals(ErmsTransformer.uuidNomStatusAlternateRepresentation)) {return NAME_ST_ALTERNATE_REPRESENTATION;
2074
		}else if (status.getUuid().equals(uuidNomStatusTemporaryName)) {return NAME_ST_TEMPORARY_NAME;
2075
		}else if (status.getUuid().equals(ErmsTransformer.uuidNomStatusSpeciesInquirenda)) {return NAME_ST_SPECIES_INQUIRENDA;
2076

    
2077
		//TODO
2078
		}else {
2079
			//TODO Exception
2080
			logger.warn("NomStatus type not yet supported by PESI export: "+ status);
2081
			return null;
2082
		}
2083
	}
2084

    
2085
	/**
2086
	 * Returns the RelTaxonQualifierCache for a given taxonRelation.
2087
	 * @param relation
2088
	 * @return
2089
	 */
2090
	public String getCacheByRelationshipType(RelationshipBase relation, NomenclaturalCode code){
2091
		if (relation == null){
2092
			return null;
2093
		}else{
2094
			String result;
2095
			Integer key = taxonRelation2RelTaxonQualifierFk(relation);
2096
			if (code.equals(NomenclaturalCode.ICZN)){
2097
				result = this.taxRelZooQualifierCacheMap.get(key);
2098
				if (result == null){
2099
					result = this.taxRelQualifierCacheMap.get(key);
2100
				}
2101
			}else{
2102
				result = this.taxRelQualifierCacheMap.get(key);
2103
			}
2104
			return result;
2105
		}
2106
	}
2107

    
2108
    public String getCacheBySynonymType(Synonym synonym, NomenclaturalCode code){
2109
        if (synonym == null){
2110
            return null;
2111
        }else{
2112
            String result;
2113
            Integer key = synonym2RelTaxonQualifierFk(synonym);
2114
            if (code.equals(NomenclaturalCode.ICZN)){
2115
                result = this.taxRelZooQualifierCacheMap.get(key);
2116
                if (result == null){
2117
                    result = this.taxRelQualifierCacheMap.get(key);
2118
                }
2119
            }else{
2120
                result = this.taxRelQualifierCacheMap.get(key);
2121
            }
2122
            return result;
2123
        }
2124
    }
2125

    
2126
    public static Integer synonym2RelTaxonQualifierFk(Synonym synonym) {
2127
        if (synonym == null || synonym.getType() == null){
2128
            return null;
2129
        }
2130
        SynonymType type = synonym.getType();
2131
        if (type.equals(SynonymType.SYNONYM_OF())) {return IS_SYNONYM_OF;
2132
        }else if (type.equals(SynonymType.HOMOTYPIC_SYNONYM_OF())) {return IS_HOMOTYPIC_SYNONYM_OF;
2133
        }else if (type.equals(SynonymType.HETEROTYPIC_SYNONYM_OF())) {return IS_HETEROTYPIC_SYNONYM_OF;
2134
        }else if (type.equals(SynonymType.INFERRED_EPITHET_OF())) {return IS_INFERRED_EPITHET_FOR;
2135
        }else if (type.equals(SynonymType.INFERRED_GENUS_OF())) {return IS_INFERRED_GENUS_FOR;
2136
        }else if (type.equals(SynonymType.POTENTIAL_COMBINATION_OF())) {return IS_POTENTIAL_COMBINATION_FOR;
2137
        }else if (type.equals(SynonymType.INFERRED_SYNONYM_OF())) {
2138
            logger.warn("Inferred synonynm type not yet implemented. Should it realy exist?");
2139
            return null;
2140
        }else{
2141
            logger.warn("Unhandled synonym type: " + type.getTitleCache());
2142
            return null;
2143
        }
2144
//              return IS_PRO_PARTE_SYNONYM_OF;
2145
//              return IS_PARTIAL_SYNONYM_OF;
2146
//              return IS_PRO_PARTE_AND_HOMOTYPIC_SYNONYM_OF;
2147
//              return IS_PARTIAL_AND_HOMOTYPIC_SYNONYM_OF;
2148
//              return IS_PRO_PARTE_AND_HETEROTYPIC_SYNONYM_OF;
2149
//              return IS_PARTIAL_AND_HETEROTYPIC_SYNONYM_OF;
2150
    }
2151

    
2152

    
2153
	/**
2154
	 * Returns the RelTaxonQualifierFk for a TaxonRelation.
2155
	 * @param relation
2156
	 * @return
2157
	 */
2158
	public static Integer taxonRelation2RelTaxonQualifierFk(RelationshipBase<?,?,?> relation) {
2159
		if (relation == null || relation.getType() == null) {
2160
			return null;
2161
		}
2162
		RelationshipTermBase<?> type = relation.getType();
2163
		if (type.equals(TaxonRelationshipType.MISAPPLIED_NAME_FOR())) {
2164
			return IS_MISAPPLIED_NAME_FOR;
2165
		} else if (type.equals(TaxonRelationshipType.PRO_PARTE_MISAPPLIED_NAME_FOR())) {
2166
            return IS_PRO_PARTE_MISAPPLIED_NAME_FOR;
2167
        } else if (type.equals(TaxonRelationshipType.PRO_PARTE_SYNONYM_FOR())) {
2168
		    return IS_PRO_PARTE_SYNONYM_OF;
2169
		} else if (type.equals(TaxonRelationshipType.PARTIAL_SYNONYM_FOR())) {
2170
            return IS_PARTIAL_SYNONYM_OF;
2171
        } else if (type.equals(NameRelationshipType.BASIONYM())) {
2172
			return IS_BASIONYM_FOR;
2173
		} else if (type.equals(NameRelationshipType.LATER_HOMONYM())) {
2174
			return IS_LATER_HOMONYM_OF;
2175
		} else if (type.equals(NameRelationshipType.REPLACED_SYNONYM())) {
2176
			return IS_REPLACED_SYNONYM_FOR;
2177
		} else if (type.equals(NameRelationshipType.VALIDATED_BY_NAME())) {
2178
			return IS_VALIDATION_OF;
2179
		} else if (type.equals(NameRelationshipType.LATER_VALIDATED_BY_NAME())) {
2180
			return IS_LATER_VALIDATION_OF;
2181
		} else if (type.equals(NameRelationshipType.CONSERVED_AGAINST())) {
2182
			return IS_CONSERVED_AGAINST;
2183
		} else if (type.equals(NameRelationshipType.TREATED_AS_LATER_HOMONYM())) {
2184
			return IS_TREATED_AS_LATER_HOMONYM_OF;
2185
		} else if (type.equals(NameRelationshipType.ORTHOGRAPHIC_VARIANT())) {
2186
			return IS_ORTHOGRAPHIC_VARIANT_OF;
2187
	    } else if (type.equals(NameRelationshipType.ORIGINAL_SPELLING())) {
2188
	        return IS_ORIGINAL_SPELLING_FOR;
2189
        } else if (type.equals(NameRelationshipType.BLOCKING_NAME_FOR())) {
2190
            return IS_BLOCKING_NAME_FOR;
2191
		} else if (type.equals(NameRelationshipType.ALTERNATIVE_NAME())) {
2192
			return IS_ALTERNATIVE_NAME_FOR;
2193
		} else if (type.equals(HybridRelationshipType.FEMALE_PARENT())) {
2194
			return IS_FEMALE_PARENT_OF;
2195
		} else if (type.equals(HybridRelationshipType.MALE_PARENT())) {
2196
			return IS_MALE_PARENT_OF;
2197
		} else if (type.equals(HybridRelationshipType.FIRST_PARENT())) {
2198
			return IS_FIRST_PARENT_OF;
2199
		} else if (type.equals(HybridRelationshipType.SECOND_PARENT())) {
2200
			return IS_SECOND_PARENT_OF;
2201
		} else if (type.getUuid().equals(TaxonRelationshipType.uuidSynonymOfTaxonRelationship)) {
2202
			return IS_SYNONYM_OF;
2203
	    } else if (type.getUuid().equals(TaxonRelationshipType.uuidHeterotypicSynonymTaxonRelationship)) {
2204
	        return IS_HETEROTYPIC_SYNONYM_OF;
2205
	    } else if (type.getUuid().equals(TaxonRelationshipType.uuidHomotypicSynonymTaxonRelationship)) {
2206
	        return IS_HOMOTYPIC_SYNONYM_OF;
2207
		} else {
2208
			logger.warn("No equivalent RelationshipType found in datawarehouse for: " + type.getTitleCache());
2209
		}
2210

    
2211
		// The following have no equivalent attribute in CDM
2212
//		IS_TYPE_OF
2213
//		IS_CONSERVED_TYPE_OF
2214
//		IS_REJECTED_TYPE_OF
2215
//		IS_REJECTED_IN_FAVOUR_OF
2216
//		HAS_SAME_TYPE_AS
2217
//		IS_LECTOTYPE_OF
2218
//		TYPE_NOT_DESIGNATED
2219

    
2220

    
2221
		return null;
2222
	}
2223
	/**
2224
     * FIXME still needed?
2225
     * Returns the RelTaxonQualifierFk for a TaxonRelation.
2226
     * @param relation
2227
     * @return
2228
     */
2229
	public static Integer synonymrelation2RelTaxonQualifierFk(Synonym syn) {
2230
        if (syn.getAcceptedTaxon() == null) {
2231
            return null;
2232
        }
2233
        if (syn.getType().equals(SynonymType.HETEROTYPIC_SYNONYM_OF())){
2234
            return IS_HETEROTYPIC_SYNONYM_OF;
2235
        } else if (syn.getType().equals(SynonymType.HOMOTYPIC_SYNONYM_OF())){
2236
            return IS_HOMOTYPIC_SYNONYM_OF;
2237
        }else if (syn.getType().equals(SynonymType.INFERRED_EPITHET_OF())) {
2238
            return IS_INFERRED_EPITHET_FOR;
2239
        } else if (syn.getType().equals(SynonymType.INFERRED_GENUS_OF())) {
2240
            return IS_INFERRED_GENUS_FOR;
2241
        } else if (syn.getType().equals(SynonymType.POTENTIAL_COMBINATION_OF())) {
2242
            return IS_POTENTIAL_COMBINATION_FOR;
2243
        }
2244
        return IS_SYNONYM_OF;
2245

    
2246
	}
2247

    
2248
	/**
2249
	 * Returns the StatusFk for a given StatusCache.
2250
	 * @param StatusCache
2251
	 * @return
2252
	 */
2253
	public Integer statusCache2StatusFk(String StatusCache) {
2254
		Integer result = null;
2255
		if (StatusCache.equalsIgnoreCase("Checked by Taxonomic Editor: included in ERMS 1.1")) {
2256
			return 0;
2257
		} else if (StatusCache.equalsIgnoreCase("Added by Database Management Team")) {
2258
			return 2;
2259
		} else if (StatusCache.equalsIgnoreCase("Checked by Taxonomic Editor")) {
2260
			return 3;
2261
		} else if (StatusCache.equalsIgnoreCase("Edited by Database Management Team")) {
2262
			return 4;
2263
		} else {
2264
			logger.error("StatusFk could not be determined. StatusCache unknown: " + StatusCache);
2265
		}
2266

    
2267
		return result;
2268
	}
2269

    
2270
	/**
2271
	 * Returns the FossilStatusFk for a given FossilStatusCache.
2272
	 * @param fossilStatusCache
2273
	 * @return
2274
	 */
2275
	public Integer fossilStatusCache2FossilStatusFk(String fossilStatusCache) {
2276
		Integer result = null;
2277
		if (fossilStatusCache.equalsIgnoreCase("recent only")) {
2278
			return 1;
2279
		} else if (fossilStatusCache.equalsIgnoreCase("fossil only")) {
2280
			return 2;
2281
		} else if (fossilStatusCache.equalsIgnoreCase("recent + fossil")) {
2282
			return 3;
2283
		} else {
2284
			logger.error("FossilStatusFk could not be determined. FossilStatusCache unknown: " + fossilStatusCache);
2285
		}
2286

    
2287
		return result;
2288
	}
2289

    
2290
	/**
2291
	 * Returns the NoteCategoryFk for a given UUID representing an ExtensionType.
2292
	 */
2293
	public static Integer getNoteCategoryFk(UUID uuid) {
2294
		Integer result = null;
2295
		if (uuid.equals(uuidExtTaxComment)) {
2296
			result = 270;
2297
		} else if (uuid.equals(uuidExtFauComment)) {
2298
			result = 281;
2299
		} else if (uuid.equals(uuidExtFauExtraCodes)) {
2300
			result = 278;
2301
		}
2302
		return result;
2303
	}
2304

    
2305
	/**
2306
	 * Returns the NoteCategoryCache for a given UUID representing an ExtensionType.
2307
	 */
2308
	public static String getNoteCategoryCache(UUID uuid) {
2309
		String result = null;
2310
		if (uuid.equals(uuidExtTaxComment)) {
2311
			result = "Taxonomy";
2312
		} else if (uuid.equals(uuidExtFauComment)) {
2313
			result = "Biology";
2314
		} else if (uuid.equals(uuidExtFauExtraCodes)) {
2315
			result = "Distribution";
2316
		}
2317
		return result;
2318
	}
2319

    
2320
	public static Integer getQualityStatusKeyBySource(EnumSet<PesiSource> sources, TaxonName taxonName) {
2321
		if (sources.contains(PesiSource.EM)){
2322
			return QUALITY_STATUS_ADD_BY_DBMT;
2323
		}else if (sources.contains(PesiSource.ERMS)){
2324
			Set<String> statusSet = getAllQualityStatus(taxonName);
2325
			if (statusSet.size() > 1){
2326
				logger.warn("ERMS TaxonName has more than 1 quality status: " + taxonName.getTitleCache() + "; lisd=" + taxonName.getLsid());
2327
			}
2328
			if (statusSet.contains("Checked by Taxonomic Editor: included in ERMS 1.1")){
2329
				return QUALITY_STATUS_CHECKED_EDITOR_ERMS_1_1;
2330
			}else if (statusSet.contains("Added by Database Management Team")){
2331
				return QUALITY_STATUS_ADD_BY_DBMT;
2332
			}else if (statusSet.contains("Checked by Taxonomic Editor")){
2333
				return QUALITY_STATUS_CHECKED_EDITOR;
2334
			}else if (statusSet.contains("Edited by Database Management Team")){
2335
				return QUALITY_STATUS_EDITED_BY_DBMT;
2336
			}else if (statusSet.contains("Added/edited by Thematic Editor")){
2337
                return QUALITY_STATUS_THEMATIC_EDITOR;
2338
            }else{
2339
				logger.warn("Unknown ERMS quality status: " + statusSet.iterator().next() + " for taxon name " + taxonName.getTitleCache());
2340
				return null;
2341
			}
2342
		}else{
2343
			return null;   // TODO needs to be implemented for others
2344
		}
2345
	}
2346

    
2347

    
2348
	private static Set<String> getAllQualityStatus(TaxonName taxonName) {
2349
		Set<String> result = new HashSet<>();
2350
		for (TaxonBase<?> taxonBase : taxonName.getTaxonBases()){
2351
			result.addAll(taxonBase.getExtensions(ErmsTransformer.uuidExtQualityStatus));
2352
		}
2353
		return result;
2354
	}
2355

    
2356
	@Override
2357
	public String getQualityStatusCacheByKey(Integer qualityStatusId) throws UndefinedTransformerMethodException {
2358
		if (qualityStatusId == null){
2359
			return null;
2360
		}else{
2361
			return this.qualityStatusCacheMap.get(qualityStatusId);
2362
		}
2363
	}
2364

    
2365
	public Object getSourceUseCacheByKey(Integer sourceUseFk) {
2366
		if (sourceUseFk == null){
2367
			return null;
2368
		}else{
2369
			return this.sourceUseCacheMap.get(sourceUseFk);
2370
		}
2371
	}
2372

    
2373
	//TODO create a reverse map
2374
	public Integer getSourceUseKeyCacheByCache(String sourceUseCache) {
2375
        if (sourceUseCache == null){
2376
            return null;
2377
        }else{
2378
            for (Integer key: sourceUseCacheMap.keySet()){
2379
                if (sourceUseCacheMap.get(key).equalsIgnoreCase(sourceUseCache)){
2380
                    return key;
2381
                }
2382
            }
2383
        }
2384
        return null;
2385
    }
2386

    
2387
	@Override
2388
	public String getTaxonStatusCacheByKey(Integer taxonStatusId) throws UndefinedTransformerMethodException {
2389
		if (taxonStatusId == null){
2390
			return null;
2391
		}else{
2392
			return this.taxonStatusCacheMap.get(taxonStatusId);
2393
		}
2394
	}
2395

    
2396
	public static String getOriginalDbBySources(EnumSet<PesiSource> sources) {
2397
		String result = "";
2398
		if (sources.contains(PesiSource.EM)){
2399
			result = CdmUtils.concat(",", result,  SOURCE_STR_EM);
2400
		}
2401
		if (sources.contains(PesiSource.FE)){
2402
			result = CdmUtils.concat(",", result,  SOURCE_STR_FE);
2403
		}
2404
		if (sources.contains(PesiSource.IF)){
2405
			result = CdmUtils.concat(",", result,  SOURCE_STR_IF);
2406
		}
2407
		if (sources.contains(PesiSource.ERMS)){
2408
			result = CdmUtils.concat(",", result,  SOURCE_STR_ERMS);
2409
		}
2410
		return result;
2411
	}
2412

    
2413
    public static Integer pesiKingdomId(String str) {
2414
        return pesiKingdomMap.get(str);
2415
    }
2416
}
(14-14/14)