Revision ab4a17f5
Added by Andreas Müller over 4 years ago
| cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/out/PesiTaxonExport.java | ||
|---|---|---|
| 288 | 288 |
}else{
|
| 289 | 289 |
logger.warn("Kingdom taxon is not of class Taxon but " + taxon.getClass().getSimpleName() + ": " + nvn.getGenusOrUninomial());
|
| 290 | 290 |
} |
| 291 |
}else if (taxon.getUuid().equals(PesiTransformer.uuidTaxonValuelessEuroMed)){
|
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String treeIndex = ((Taxon)taxon).getTaxonNodes().iterator().next().treeIndex(); |
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Integer kingdomId = PesiTransformer.pesiKingdomMap.get("Plantae");
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state.getTreeIndexKingdomMap().put(treeIndex, kingdomId); |
|
| 295 | 291 |
} |
| 296 | 292 |
}catch(NullPointerException e){
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| 297 | 293 |
logger.error(nvn.getTitleCache() + " has no Rank!"); |
| ... | ... | |
| 476 | 472 |
logger.info ("Ignore PHASE 3: Add Rank data, KingdomFk, TypeNameFk, expertFk and speciesExpertFk...");
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| 477 | 473 |
return success; |
| 478 | 474 |
} |
| 475 |
|
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addValuelessTaxonToKingdomMap(state); |
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| 477 |
|
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| 479 | 478 |
// Get the limit for objects to save within a single transaction. |
| 480 | 479 |
int limit = state.getConfig().getLimitSave(); |
| 481 | 480 |
|
| ... | ... | |
| 537 | 536 |
return success; |
| 538 | 537 |
} |
| 539 | 538 |
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private void addValuelessTaxonToKingdomMap(PesiExportState state) {
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TransactionStatus txStatus = startTransaction(); |
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Taxon valuelessTaxon = (Taxon)getTaxonService().find(PesiTransformer.uuidTaxonValuelessEuroMed); |
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if (valuelessTaxon != null){
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String treeIndex = valuelessTaxon.getTaxonNodes().iterator().next().treeIndex(); |
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Integer kingdomId = PesiTransformer.pesiKingdomMap.get("Plantae");
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state.getTreeIndexKingdomMap().put(treeIndex, kingdomId); |
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} |
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commitTransaction(txStatus); |
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} |
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|
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| 540 | 550 |
// 4th round: Add TreeIndex to each taxon |
| 541 | 551 |
private boolean doPhase04(PesiExportState state) {
|
| 542 | 552 |
boolean success = true; |
Also available in: Unified diff
2717 fix finding kingdom for valueless EM taxa¶