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// $Id$
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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.berlinModel.in.validation;
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import java.sql.ResultSet;
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import java.sql.SQLException;
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import org.apache.commons.lang.StringUtils;
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import org.apache.log4j.Logger;
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import eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportConfigurator;
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import eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportState;
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import eu.etaxonomy.cdm.io.common.IOValidator;
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import eu.etaxonomy.cdm.io.common.Source;
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/**
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* @author a.mueller
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* @created 17.02.2010
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*/
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public class BerlinModelOccurrenceImportValidator implements IOValidator<BerlinModelImportState> {
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private static final Logger logger = Logger.getLogger(BerlinModelOccurrenceImportValidator.class);
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@Override
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public boolean validate(BerlinModelImportState state) {
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boolean result = true;
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BerlinModelImportConfigurator bmiConfig = state.getConfig();
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result &= checkTaxonIsAccepted(bmiConfig);
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//result &= checkPartOfJournal(bmiConfig);
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System.out.println("Checking for Occurrence not yet fully implemented");
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return result;
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}
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//******************************** CHECK *************************************************
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private static boolean checkTaxonIsAccepted(BerlinModelImportConfigurator config){
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try {
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boolean result = true;
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Source source = config.getSource();
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String strQuery = "SELECT emOccurrence.OccurrenceId, PTaxon.StatusFk, Name.FullNameCache, Status.Status, PTaxon.PTRefFk, Reference.RefCache " +
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" FROM emOccurrence INNER JOIN " +
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" PTaxon ON emOccurrence.PTNameFk = PTaxon.PTNameFk AND emOccurrence.PTRefFk = PTaxon.PTRefFk INNER JOIN " +
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" Name ON PTaxon.PTNameFk = Name.NameId INNER JOIN " +
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" Status ON PTaxon.StatusFk = Status.StatusId LEFT OUTER JOIN " +
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" Reference ON PTaxon.PTRefFk = Reference.RefId " +
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" WHERE (PTaxon.StatusFk NOT IN ( 1, 5)) ";
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if (StringUtils.isNotBlank(config.getOccurrenceFilter())){
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strQuery += String.format(" AND (%s) ", config.getOccurrenceFilter()) ;
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}
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ResultSet resulSet = source.getResultSet(strQuery);
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boolean firstRow = true;
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while (resulSet.next()){
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if (firstRow){
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System.out.println("========================================================");
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System.out.println("There are Occurrences for a taxon that is not accepted!");
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System.out.println("========================================================");
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}
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int occurrenceId = resulSet.getInt("OccurrenceId");
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// int statusFk = resulSet.getInt("StatusFk");
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String status = resulSet.getString("Status");
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String fullNameCache = resulSet.getString("FullNameCache");
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String ptRefFk = resulSet.getString("PTRefFk");
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String ptRef = resulSet.getString("RefCache");
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System.out.println("OccurrenceId:" + occurrenceId + "\n Status: " + status +
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"\n FullNameCache: " + fullNameCache + "\n ptRefFk: " + ptRefFk +
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"\n sec: " + ptRef );
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result = firstRow = false;
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}
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return result;
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} catch (SQLException e) {
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e.printStackTrace();
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return false;
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}
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}
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}
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