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30 |
import eu.etaxonomy.cdm.io.common.mapping.UndefinedTransformerMethodException;
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31 |
import eu.etaxonomy.cdm.model.agent.AgentBase;
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import eu.etaxonomy.cdm.model.agent.TeamOrPersonBase;
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import eu.etaxonomy.cdm.model.common.Annotation;
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import eu.etaxonomy.cdm.model.common.AnnotationType;
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import eu.etaxonomy.cdm.model.common.CdmBase;
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import eu.etaxonomy.cdm.model.common.Language;
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import eu.etaxonomy.cdm.model.description.CommonTaxonName;
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| ... | ... | |
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String trivialString = rs.getString(RedListUtil.TRIVIAL);
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String authorBasiString = rs.getString(RedListUtil.AUTOR_BASI);
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String hybString = rs.getString(RedListUtil.HYB);
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String florString = rs.getString(RedListUtil.FLOR);
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String atlasIdxString = rs.getString(RedListUtil.ATLAS_IDX);
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String kartString = rs.getString(RedListUtil.KART);
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String rl2015String = rs.getString(RedListUtil.RL2015);
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String ehrdString = rs.getString(RedListUtil.EHRD);
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String wisskString = rs.getString(RedListUtil.WISSK);
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TaxonBase<?> taxonBase = null;
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if(authorBasiString.trim().contains(RedListUtil.AUCT)){
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| ... | ... | |
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description.addElement(CommonTaxonName.NewInstance(trivialString, Language.GERMAN()));
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}
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//add annotations
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addAnnotation(RedListUtil.FLOR+": "+florString, taxonBase);
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addAnnotation(RedListUtil.ATLAS_IDX+": "+atlasIdxString, taxonBase);
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addAnnotation(RedListUtil.KART+": "+kartString, taxonBase);
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addAnnotation(RedListUtil.RL2015+": "+rl2015String, taxonBase);
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addAnnotation(RedListUtil.EHRD+": "+ehrdString, taxonBase);
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addAnnotation(RedListUtil.WISSK+": "+wisskString, taxonBase);
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//check taxon name consistency
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checkTaxonNameConsistency(id, taxNameString, hybString, taxonBase);
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return taxonBase;
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}
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private void addAnnotation(String string, TaxonBase<?> taxonBase) {
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if(CdmUtils.isNotBlank(string)){
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taxonBase.addAnnotation(Annotation.NewInstance(string, AnnotationType.TECHNICAL(), Language.GERMAN()));
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}
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}
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private void importAuthors(RedListGefaesspflanzenImportState state, ResultSet rs, NonViralName<?> name) throws SQLException {
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| 274 |
296 |
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long id = rs.getLong(RedListUtil.NAMNR);
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| ... | ... | |
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String ep3String = rs.getString(RedListUtil.EPI3);
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String nomZusatzString = rs.getString(RedListUtil.NOM_ZUSATZ);
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String hybString = rs.getString(RedListUtil.HYB);
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String formelString = rs.getString(RedListUtil.FORMEL);
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| 362 |
385 |
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| 363 |
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if(CdmUtils.isBlank(taxNameString) && CdmUtils.isBlank(ep1String)){
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RedListUtil.logMessage(id, "No name found!", logger);
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| ... | ... | |
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}
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//hybrid
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if(CdmUtils.isNotBlank(hybString)){
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//save hybrid formula
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if(CdmUtils.isNotBlank(formelString)){
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Annotation annotation = Annotation.NewDefaultLanguageInstance(formelString);
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annotation.setAnnotationType(AnnotationType.TECHNICAL());
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name.addAnnotation(annotation);
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}
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| 405 |
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if(hybString.equals(RedListUtil.HYB_X)){
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| 406 |
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name.setBinomHybrid(true);
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| 407 |
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}
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| ... | ... | |
| 449 |
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RedListUtil.logMessage(id, "HYB is "+hybString+" but "+RedListUtil.HYB+" does not contain "+RedListUtil.HYB_SIGN, logger);
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| 450 |
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}
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}
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else if(hybString.equals(RedListUtil.HYB_XS)){
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//nothing to do
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|
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}
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| 452 |
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else{
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| 453 |
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logger.error("HYB value "+hybString+" not yet handled");
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| 454 |
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}
|
| ... | ... | |
| 480 |
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}
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| 481 |
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}
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else{
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| 483 |
|
if(!authorString.startsWith(authorshipCache)){
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|
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if(CdmUtils.isNotBlank(authorString) && !authorString.startsWith(authorshipCache)){
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| 484 |
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RedListUtil.logMessage(id, "Authorship inconsistent! name.authorhshipCache <-> Column "+RedListUtil.AUTOR+": "+authorshipCache+" <-> "+authorString, logger);
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}
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| 486 |
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}
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#5448 Import annotation infos