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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.pesi.indexFungorum;
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import org.apache.commons.lang.StringUtils;
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import org.apache.log4j.Logger;
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import eu.etaxonomy.cdm.io.common.TdwgAreaProvider;
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import eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase;
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import eu.etaxonomy.cdm.io.common.mapping.UndefinedTransformerMethodException;
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import eu.etaxonomy.cdm.model.location.NamedArea;
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import eu.etaxonomy.cdm.model.location.Country;
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import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
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import eu.etaxonomy.cdm.model.name.Rank;
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/**
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* @author a.mueller
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* @since 01.03.2010
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* @version 1.0
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*/
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public final class IndexFungorumTransformer extends InputTransformerBase {
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private static final Logger logger = Logger.getLogger(IndexFungorumTransformer.class);
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public static final String LSID_PREFIX = "urn:lsid:indexfungorum.org:names:";
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public static NomenclaturalCode kingdomId2NomCode(Integer kingdomId){
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switch (kingdomId){
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case 1: return null;
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case 2: return NomenclaturalCode.ICZN; //Animalia
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case 3: return NomenclaturalCode.ICNAFP; //Plantae
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case 4: return NomenclaturalCode.ICNAFP; //Fungi
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case 5: return NomenclaturalCode.ICZN ; //Protozoa
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case 6: return NomenclaturalCode.ICNB ; //Bacteria
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case 7: return NomenclaturalCode.ICNAFP; //Chromista
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case 147415: return NomenclaturalCode.ICNB; //Monera
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default: return null;
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}
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}
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@Override
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public Rank getRankByKey(String key) throws UndefinedTransformerMethodException {
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if (StringUtils.isBlank(key)){
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return null;
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}
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Integer rankFk = Integer.valueOf(key);
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switch (rankFk){
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case 10: return Rank.KINGDOM();
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case 30: return Rank.DIVISION();
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case 40: return Rank.SUBDIVISION();
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case 60: return Rank.CLASS();
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case 70: return Rank.SUBCLASS();
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case 100: return Rank.ORDER();
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case 110: return Rank.SUBORDER(); //not needed
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case 140: return Rank.FAMILY();
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default:
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logger.warn("Unhandled rank: " + rankFk);
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return null;
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}
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getNamedAreaByKey(java.lang.String)
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*/
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@Override
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public NamedArea getNamedAreaByKey(String key) throws UndefinedTransformerMethodException {
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if (StringUtils.isBlank(key)){
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return null;
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}else if (key.equalsIgnoreCase("AT")){return TdwgAreaProvider.getAreaByTdwgAbbreviation("AUT-AU");
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}else if (key.equalsIgnoreCase("LU")){return TdwgAreaProvider.getAreaByTdwgAbbreviation("BGM-LU");
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}else if (key.equalsIgnoreCase("BA")){return TdwgAreaProvider.getAreaByTdwgAbbreviation("YUG-BH");
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}else if (key.equalsIgnoreCase("BG")){return TdwgAreaProvider.getAreaByTdwgAbbreviation("BUL-OO");
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}else if (key.equalsIgnoreCase("EE")){return TdwgAreaProvider.getAreaByTdwgAbbreviation("BLT-ES");
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}else if (key.equalsIgnoreCase("FR")){return TdwgAreaProvider.getAreaByTdwgAbbreviation("FRA");
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}else if (key.equalsIgnoreCase("DE")){return TdwgAreaProvider.getAreaByTdwgAbbreviation("GER-OO");
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}else if (key.equalsIgnoreCase("IE")){return TdwgAreaProvider.getAreaByTdwgAbbreviation("IRE-IR");
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}else if (key.equalsIgnoreCase("CH")){return TdwgAreaProvider.getAreaByTdwgAbbreviation("SWI-OO");
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}else if (key.equalsIgnoreCase("NL")){return TdwgAreaProvider.getAreaByTdwgAbbreviation("NET-OO");
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}else if (key.equalsIgnoreCase("HU")){return TdwgAreaProvider.getAreaByTdwgAbbreviation("HUN-OO");
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}else if (key.equalsIgnoreCase("IT")){return TdwgAreaProvider.getAreaByTdwgAbbreviation("ITA");
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}else if (key.equalsIgnoreCase("LV")){return TdwgAreaProvider.getAreaByTdwgAbbreviation("BLT-LA");
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}else if (key.equalsIgnoreCase("LT")){return TdwgAreaProvider.getAreaByTdwgAbbreviation("BLT-LI");
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}else if (key.equalsIgnoreCase("NO")){return TdwgAreaProvider.getAreaByTdwgAbbreviation("NOR-OO");
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}else if (key.equalsIgnoreCase("PL")){return TdwgAreaProvider.getAreaByTdwgAbbreviation("POL-OO");
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}else if (key.equalsIgnoreCase("RO")){return TdwgAreaProvider.getAreaByTdwgAbbreviation("ROM-OO");
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}else if (key.equalsIgnoreCase("MT")){return TdwgAreaProvider.getAreaByTdwgAbbreviation("SIC-MA");
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}else if (key.equalsIgnoreCase("SK")){return TdwgAreaProvider.getAreaByTdwgAbbreviation("CZE-SK");
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}else if (key.equalsIgnoreCase("RS")){return TdwgAreaProvider.getAreaByTdwgAbbreviation("YUG-SE");
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}else if (key.equalsIgnoreCase("SE")){return TdwgAreaProvider.getAreaByTdwgAbbreviation("SWE-OO");
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}else if (key.equalsIgnoreCase("AM")){return TdwgAreaProvider.getAreaByTdwgAbbreviation("TCS-AR");
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}else if (key.equalsIgnoreCase("IL")){return TdwgAreaProvider.getAreaByTdwgAbbreviation("PAL-IS");
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}else if (key.equalsIgnoreCase("UK")){return Country.UNITEDKINGDOMOFGREATBRITAINANDNORTHERNIRELAND();
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}else if (key.equalsIgnoreCase("DK")){return Country.DENMARKKINGDOMOF();
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}else if (key.equalsIgnoreCase("GR")){return Country.GREECEHELLENICREPUBLIC();
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}else if (key.equalsIgnoreCase("ES")){return Country.SPAINSPANISHSTATE();
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}else if (key.equalsIgnoreCase("PT")){return Country.PORTUGALPORTUGUESEREPUBLIC();
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}else if (key.equalsIgnoreCase("RU")){return Country.RUSSIANFEDERATION();
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}else if (key.equalsIgnoreCase("UA")){return Country.UKRAINE();
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}else if (key.equalsIgnoreCase("GE")){return Country.GEORGIA();
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}else if (key.equalsIgnoreCase("TR")){return Country.TURKEYREPUBLICOF();
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} else {
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logger.warn("Area not yet mapped: " + key);
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return null;
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}
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}
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}
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