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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.eflora.centralAfrica.ferns;
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import java.sql.ResultSet;
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import java.sql.SQLException;
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import java.util.HashMap;
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import java.util.Map;
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import org.apache.log4j.Logger;
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import org.springframework.stereotype.Component;
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import eu.etaxonomy.cdm.io.common.IImportConfigurator;
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import eu.etaxonomy.cdm.io.common.IOValidator;
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import eu.etaxonomy.cdm.io.common.mapping.DbIgnoreMapper;
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import eu.etaxonomy.cdm.io.common.mapping.DbImportMapping;
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import eu.etaxonomy.cdm.io.common.mapping.DbImportStringMapper;
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import eu.etaxonomy.cdm.io.common.mapping.DbNotYetImplementedMapper;
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import eu.etaxonomy.cdm.io.common.mapping.IMappingImport;
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import eu.etaxonomy.cdm.io.eflora.centralAfrica.ferns.validation.CentralAfricaFernsReferenceImportValidator;
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import eu.etaxonomy.cdm.model.common.CdmBase;
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import eu.etaxonomy.cdm.model.reference.Reference;
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import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
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/**
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* @author a.mueller
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* @since 20.02.2010
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*/
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@Component
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public class CentralAfricaFernsReferenceImport extends CentralAfricaFernsImportBase<Reference> implements IMappingImport<Reference, CentralAfricaFernsImportState>{
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private static final Logger logger = Logger.getLogger(CentralAfricaFernsReferenceImport.class);
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private DbImportMapping<?,?> mapping;
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// private int modCount = 10000;
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private static final String pluralString = "references";
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private static final String dbTableName = "literature";
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private static final Class<?> cdmTargetClass = Reference.class;
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public CentralAfricaFernsReferenceImport(){
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super(pluralString, dbTableName, cdmTargetClass);
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.globis.GlobisImportBase#getIdQuery()
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*/
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@Override
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protected String getIdQuery() {
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String strRecordQuery =
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" SELECT refID " +
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" FROM " + dbTableName;
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return strRecordQuery;
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportBase#getRecordQuery(eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportConfigurator)
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*/
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@Override
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protected String getRecordQuery(CentralAfricaFernsImportConfigurator config) {
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String strRecordQuery =
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" SELECT * " +
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" FROM literature " +
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" WHERE ( literature.refId IN (" + ID_LIST_TOKEN + ") )";
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return strRecordQuery;
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.globis.GlobisImportBase#getMapping()
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*/
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protected DbImportMapping getMapping() {
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if (mapping == null){
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mapping = new DbImportMapping();
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// mapping.addMapper(DbImportObjectCreationMapper.NewInstance(this, "refID", REFERENCE_NAMESPACE)); //id
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mapping.addMapper(DbIgnoreMapper.NewInstance("CountryDummy"));
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mapping.addMapper(DbNotYetImplementedMapper.NewInstance("CreatedBy"));
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mapping.addMapper(DbNotYetImplementedMapper.NewInstance("DateCreated"));
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mapping.addMapper(DbNotYetImplementedMapper.NewInstance("DateModified"));
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mapping.addMapper(DbNotYetImplementedMapper.NewInstance("ModifiedBy"));
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mapping.addMapper(DbImportStringMapper.NewInstance("RefBookTitle", "title", false));
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//mapping.addMapper(DbImportTimePeriodMapper.NewInstance("RefDatePublished", "datePublished", false));
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mapping.addMapper(DbNotYetImplementedMapper.NewInstance("RefDatePublished"));
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// mapping.addMapper(DbImportExtensionTypeCreationMapper.NewInstance(dbIdAttribute, extensionTypeNamespace, dbTermAttribute, dbLabelAttribute, dbLabelAbbrevAttribute)
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mapping.addMapper(DbNotYetImplementedMapper.NewInstance("RefIll only"));
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mapping.addMapper(DbImportStringMapper.NewInstance("ISSN", "issn", false));
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mapping.addMapper(DbNotYetImplementedMapper.NewInstance("RefMarker"));
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mapping.addMapper(DbImportStringMapper.NewInstance("RefPages", "pages"));
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mapping.addMapper(DbNotYetImplementedMapper.NewInstance("RefPages only"));
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Reference ref = null;
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// ref.setP
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//// mapping.addMapper(DbImportExtensionMapper.NewInstance("imis_id", GlobisTransformer.IMIS_UUID, "imis", "imis", "imis"));
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//
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// mapping.addMapper(DbImportTruncatedStringMapper.NewInstance("source_name", "titleCache", "title"));
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// mapping.addMapper(DbImportStringMapper.NewInstance("source_abstract", "referenceAbstract"));
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// mapping.addMapper(DbImportAnnotationMapper.NewInstance("source_note", AnnotationType.EDITORIAL(), Language.DEFAULT()));
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//
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// //or as Extension?
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// mapping.addMapper(DbImportExtensionMapper.NewInstance("source_link", ExtensionType.URL()));
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//
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// //not yet implemented
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// mapping.addMapper(DbNotYetImplementedMapper.NewInstance("source_type"));
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// mapping.addMapper(DbNotYetImplementedMapper.NewInstance("source_orig_fn"));
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}
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return mapping;
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.common.mapping.IMappingImport#createObject(java.sql.ResultSet, eu.etaxonomy.cdm.io.common.ImportStateBase)
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*/
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public Reference createObject(ResultSet rs, CentralAfricaFernsImportState state)
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throws SQLException {
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Reference ref;
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String refType = rs.getString("RefType");
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if (refType == null){
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ref = ReferenceFactory.newGeneric();
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}else if (refType == "book"){
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ref = ReferenceFactory.newBook();
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}else if (refType == "paper in journal"){
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ref = ReferenceFactory.newArticle();
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}else if (refType.startsWith("unpublished") ){
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ref = ReferenceFactory.newGeneric();
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}else if (refType.endsWith("paper in journal")){
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ref = ReferenceFactory.newArticle();
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}else if (refType == "paper in book"){
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ref = ReferenceFactory.newBookSection();
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}else if (refType == "paper in journalwebsite"){
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ref = ReferenceFactory.newArticle();
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}else{
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logger.warn("Unknown reference type: " + refType);
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ref = ReferenceFactory.newGeneric();
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}
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return ref;
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}
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@Override
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public Map<Object, Map<String, ? extends CdmBase>> getRelatedObjectsForPartition(ResultSet rs, CentralAfricaFernsImportState state) {
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Map<Object, Map<String, ? extends CdmBase>> result = new HashMap<Object, Map<String, ? extends CdmBase>>();
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return result; //not needed
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}
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@Override
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protected boolean doCheck(CentralAfricaFernsImportState state){
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IOValidator<CentralAfricaFernsImportState> validator = new CentralAfricaFernsReferenceImportValidator();
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return validator.validate(state);
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}
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@Override
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protected boolean isIgnore(CentralAfricaFernsImportState state){
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//TODO
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return state.getConfig().getDoReferences() != IImportConfigurator.DO_REFERENCES.ALL;
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}
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}
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