Revision 9ff7f3d8
Added by Katja Luther over 4 years ago
| cdm-pesi/src/main/java/eu/etaxonomy/cdm/app/pesi/merging/FaunaEuErmsFindIdenticalNamesActivator.java | ||
|---|---|---|
| 95 | 95 |
resultOK = resultOK && sc.writeSameNamesdifferentAuthorToCsv(mergingObjects, sFileName + "_authors.csv"); |
| 96 | 96 |
resultOK = resultOK &&sc.writeSameNamesdifferentStatusToCsv(mergingObjects, sFileName + "_status.csv"); |
| 97 | 97 |
resultOK = resultOK &&sc.writeSameNamesToCsVFile(mergingObjects, sFileName + "_names.csv"); |
| 98 |
resultOK = resultOK &&sc.writeSameNamesdifferentPhylumToCsv(mergingObjects, sFileName + "_phylum.csv"); |
|
| 98 |
//do not create the phylum file, explanation inside the method writeSameNamesdifferentPhylumToCsv |
|
| 99 |
//resultOK = resultOK &&sc.writeSameNamesdifferentPhylumToCsv(mergingObjects, sFileName + "_phylum.csv"); |
|
| 99 | 100 |
resultOK = resultOK &&sc.writeSameNamesDifferentParentToCsv(mergingObjects, sFileName + "parent.csv"); |
| 100 | 101 |
|
| 101 | 102 |
System.err.println("End merging Fauna Europaea and Erms" + resultOK);
|
| ... | ... | |
| 125 | 126 |
private boolean writeSameNamesdifferentPhylumToCsv(List<FaunaEuErmsMerging> mergingObjects, String sfileName){
|
| 126 | 127 |
try |
| 127 | 128 |
{
|
| 129 |
//do we really need this?? it is a taxon needed merged like all others? for erms only one taxon has different phylum. (Valencia, but these are not the same taxa -> fish and ribbon worms) |
|
| 128 | 130 |
FileWriter writer = new FileWriter(sfileName); |
| 129 | 131 |
|
| 130 | 132 |
//create Header |
| ... | ... | |
| 133 | 135 |
|
| 134 | 136 |
//write data |
| 135 | 137 |
for (FaunaEuErmsMerging merging : mergingObjects){
|
| 136 |
//TODO |
|
| 138 |
//TODO the phyllum is always different doing it this way, maybe we need to merge the phylum taxa first and then
|
|
| 137 | 139 |
if ((merging.getPhylumInErms()== null )^ (merging.getPhylumInFaunaEu()== null)){
|
| 138 | 140 |
writeCsvLine(writer, merging) ; |
| 139 | 141 |
}else if(!((merging.getPhylumInErms()==null) && (merging.getPhylumInFaunaEu()==null))){
|
| 140 |
if(!merging.getPhylumInErms().equals(merging.getPhylumInFaunaEu())){
|
|
| 142 |
if(!merging.getPhylumInErms().getNameTitleCache().equals(merging.getPhylumInFaunaEu().getNameTitleCache())){
|
|
| 141 | 143 |
writeCsvLine(writer, merging) ; |
| 142 | 144 |
} |
| 143 | 145 |
} |
| ... | ... | |
| 214 | 216 |
writer.append(';');
|
| 215 | 217 |
writer.append("id in Fauna Europaea");
|
| 216 | 218 |
writer.append(';');
|
| 217 |
writer.append("name");
|
|
| 219 |
writer.append("name in FE");
|
|
| 218 | 220 |
writer.append(';');
|
| 219 |
writer.append("author");
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|
| 221 |
writer.append("author in FE");
|
|
| 220 | 222 |
writer.append(';');
|
| 221 |
writer.append("rank");
|
|
| 223 |
writer.append("rank in FE");
|
|
| 222 | 224 |
writer.append(';');
|
| 223 |
writer.append("state");
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|
| 225 |
writer.append("state in FE");
|
|
| 224 | 226 |
writer.append(';');
|
| 225 |
writer.append("phylum");
|
|
| 227 |
writer.append("phylum in FE");
|
|
| 226 | 228 |
writer.append(';');
|
| 227 |
writer.append("parent");
|
|
| 229 |
writer.append("parent in FE");
|
|
| 228 | 230 |
writer.append(';');
|
| 229 |
writer.append("parent rank");
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| 231 |
writer.append("parent rank in FE");
|
|
| 230 | 232 |
writer.append(';');
|
| 231 | 233 |
|
| 232 | 234 |
writer.append("uuid in Erms");
|
| 233 | 235 |
writer.append(';');
|
| 234 | 236 |
writer.append("id in Erms");
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| 235 | 237 |
writer.append(';');
|
| 236 |
writer.append("name");
|
|
| 238 |
writer.append("name in Erms");
|
|
| 237 | 239 |
writer.append(';');
|
| 238 |
writer.append("author");
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|
| 240 |
writer.append("author in Erms");
|
|
| 239 | 241 |
writer.append(';');
|
| 240 |
writer.append("rank");
|
|
| 242 |
writer.append("rank in Erms");
|
|
| 241 | 243 |
writer.append(';');
|
| 242 |
writer.append("state");
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|
| 244 |
writer.append("state in Erms");
|
|
| 243 | 245 |
writer.append(';');
|
| 244 |
writer.append("phylum");
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|
| 246 |
writer.append("phylum in Erms");
|
|
| 245 | 247 |
writer.append(';');
|
| 246 |
writer.append("parent");
|
|
| 248 |
writer.append("parent in Erms");
|
|
| 247 | 249 |
writer.append(';');
|
| 248 |
writer.append("parent rank");
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|
| 250 |
writer.append("parent rank in Erms");
|
|
| 249 | 251 |
writer.append('\n');
|
| 250 | 252 |
} |
| 251 | 253 |
|
| ... | ... | |
| 348 | 350 |
} |
| 349 | 351 |
|
| 350 | 352 |
writer.append(';');
|
| 351 |
writer.append(merging.getPhylumInErms() != null? merging.getPhylumInErms().getTaxonTitleCache():"");
|
|
| 353 |
writer.append(merging.getPhylumInErms() != null? merging.getPhylumInErms().getTitleCache():""); |
|
| 352 | 354 |
writer.append(';');
|
| 353 | 355 |
writer.append(merging.getParentStringInErms()); |
| 354 | 356 |
writer.append(';');
|
| ... | ... | |
| 537 | 539 |
mergeObject.setRankInErms(ermsName.getRank().getLabel()); |
| 538 | 540 |
mergeObject.setRankInFaunaEu(faunaEuName.getRank().getLabel()); |
| 539 | 541 |
|
| 540 |
//set parent informations |
|
| 541 |
|
|
| 542 |
|
|
| 543 |
/* |
|
| 544 |
Set<HybridRelationship> parentRelations = zooName.getParentRelationships(); |
|
| 545 |
Iterator parentIterator = parentRelations.iterator(); |
|
| 546 |
HybridRelationship parentRel; |
|
| 547 |
ZoologicalName parentName; |
|
| 548 |
while (parentIterator.hasNext()){
|
|
| 549 |
parentRel = (HybridRelationship)parentIterator.next(); |
|
| 550 |
parentName = (ZoologicalName)parentRel.getParentName(); |
|
| 551 |
mergeObject.setParentRankStringInErms(parentName.getRank().getLabel()); |
|
| 552 |
mergeObject.setParentStringInErms(parentName.getNameCache()); |
|
| 553 |
} |
|
| 554 |
|
|
| 555 |
parentRelations = zooName2.getParentRelationships(); |
|
| 556 |
parentIterator = parentRelations.iterator(); |
|
| 557 |
|
|
| 558 |
while (parentIterator.hasNext()){
|
|
| 559 |
parentRel = (HybridRelationship)parentIterator.next(); |
|
| 560 |
parentName = (ZoologicalName)parentRel.getParentName(); |
|
| 561 |
mergeObject.setParentRankStringInFaunaEu(parentName.getRank().getLabel()); |
|
| 562 |
mergeObject.setParentStringInFaunaEu(parentName.getNameCache()); |
|
| 563 |
}*/ |
|
| 542 |
|
|
| 564 | 543 |
merge.add(mergeObject); |
| 565 | 544 |
} |
| 566 |
// } |
|
| 545 |
|
|
| 567 | 546 |
|
| 568 | 547 |
return merge; |
| 569 | 548 |
|
Also available in: Unified diff
merging fauna Eu - Erms -continue