EDIT

/**

* Copyright (C) 2016 EDIT

* European Distributed Institute of Taxonomy

* http://www.e-taxonomy.eu

*

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.io.mexico;

import java.net.URI;

import java.util.Map;

import java.util.Set;

import java.util.UUID;

import org.apache.commons.lang3.StringUtils;

import org.apache.log4j.Logger;

import org.springframework.stereotype.Component;

import eu.etaxonomy.cdm.ext.geo.GeoServiceArea;

import eu.etaxonomy.cdm.ext.geo.GeoServiceAreaAnnotatedMapping;

import eu.etaxonomy.cdm.io.common.mapping.UndefinedTransformerMethodException;

import eu.etaxonomy.cdm.model.common.Language;

import eu.etaxonomy.cdm.model.common.OrderedTermVocabulary;

import eu.etaxonomy.cdm.model.common.OriginalSourceType;

import eu.etaxonomy.cdm.model.common.Representation;

import eu.etaxonomy.cdm.model.common.TermType;

import eu.etaxonomy.cdm.model.description.Distribution;

import eu.etaxonomy.cdm.model.description.PresenceAbsenceTerm;

import eu.etaxonomy.cdm.model.description.TaxonDescription;

import eu.etaxonomy.cdm.model.location.NamedArea;

import eu.etaxonomy.cdm.model.location.NamedAreaLevel;

import eu.etaxonomy.cdm.model.location.NamedAreaType;

import eu.etaxonomy.cdm.model.reference.Reference;

import eu.etaxonomy.cdm.model.reference.ReferenceFactory;

import eu.etaxonomy.cdm.model.taxon.Taxon;

/**

 * @author a.mueller

 * @since 16.06.2016

 *

 */

@Component

public class MexicoConabioDistributionImport<CONFIG extends MexicoConabioImportConfigurator>

            extends SimpleExcelTaxonImport<CONFIG> {

    private static final long serialVersionUID = -1733208053395372094L;

    private static final Logger logger = Logger.getLogger(MexicoConabioDistributionImport.class);

    private OrderedTermVocabulary<NamedArea> stateAreasVoc;

    private NamedArea mexico;

    private Map<String, Taxon> taxonIdMap;

    @Override

    protected String getWorksheetName(CONFIG config) {

        return "DistribucionEstatal";

    }

    @SuppressWarnings("unchecked")

    private void initTaxa() {

        if (taxonIdMap == null){

            Set<String> existingKeys = MexicoConabioTaxonImport.taxonIdMap.keySet();

            taxonIdMap = (Map<String, Taxon>)getCommonService().getSourcedObjectsByIdInSource(Taxon.class,

                    existingKeys, MexicoConabioTaxonImport.TAXON_NAMESPACE);

        }

    }

    @Override

    protected void firstPass(SimpleExcelTaxonImportState<CONFIG> state) {

        initAreaVocabulary(state);

        initTaxa();

        String line = state.getCurrentLine() + ": ";

        Map<String, String> record = state.getOriginalRecord();

        String idCat = getValue(record, "IdCAT");

        Taxon taxon = taxonIdMap.get(idCat);

        if (taxon == null){

            logger.warn(line + "Taxon could not be found: " + idCat);

        }else{

            TaxonDescription desc = getTaxonDescription(taxon);

            String distrStatusStr = getValue(record, "TipoDistribucion");

            try {

                if (distrStatusStr != null){

                    PresenceAbsenceTerm mexicanDistributionStatus = state.getTransformer().getPresenceTermByKey(distrStatusStr);

                    if (mexicanDistributionStatus == null){

                        UUID statusUuid = state.getTransformer().getPresenceTermUuid(distrStatusStr);

                        mexicanDistributionStatus = getPresenceTerm(state, statusUuid,

                                distrStatusStr, distrStatusStr, null, false);

                    }

                    if (mexicanDistributionStatus != null){

                        Distribution mexicanDistribution = Distribution.NewInstance(mexico, mexicanDistributionStatus);

                        desc.addElement(mexicanDistribution);

                        String refStr = getValue(record, "ReferenciaTipoDistribucion");

                        Reference ref = getReference(state, refStr);

                        if (ref != null){

                            mexicanDistribution.addSource(OriginalSourceType.PrimaryTaxonomicSource,

                                    null, null, ref, null);

                        }

                    }

                }

            } catch (UndefinedTransformerMethodException e) {}

            handleDistribution(state, desc, "AGUASCALIENTES", MexicoConabioTransformer.uuidAguascalientes, line);

            handleDistribution(state, desc, "BAJA CALIFORNIA", MexicoConabioTransformer.uuidBaja_california, line);

            handleDistribution(state, desc, "BAJA CALIFORNIA SUR", MexicoConabioTransformer.uuidBaja_california_sur, line);

            handleDistribution(state, desc, "CAMPECHE", MexicoConabioTransformer.uuidCampeche, line);

            handleDistribution(state, desc, "COAHUILA DE ZARAGOZA", MexicoConabioTransformer.uuidCoahuila_de_zaragoza, line);

            handleDistribution(state, desc, "COLIMA", MexicoConabioTransformer.uuidColima, line);

            handleDistribution(state, desc, "CHIAPAS", MexicoConabioTransformer.uuidChiapas, line);

            handleDistribution(state, desc, "CHIHUAHUA", MexicoConabioTransformer.uuidChihuahua, line);

            handleDistribution(state, desc, "DISTRITO FEDERAL", MexicoConabioTransformer.uuidDistrito_federal, line);

            handleDistribution(state, desc, "DURANGO", MexicoConabioTransformer.uuidDurango, line);

            handleDistribution(state, desc, "GUANAJUATO", MexicoConabioTransformer.uuidGuanajuato, line);

            handleDistribution(state, desc, "GUERRERO", MexicoConabioTransformer.uuidGuerrero, line);

            handleDistribution(state, desc, "HIDALGO", MexicoConabioTransformer.uuidHidalgo, line);

            handleDistribution(state, desc, "JALISCO", MexicoConabioTransformer.uuidJalisco, line);

            handleDistribution(state, desc, "MEXICO", MexicoConabioTransformer.uuidMexico, line);

            handleDistribution(state, desc, "MICHOACAN DE OCAMPO", MexicoConabioTransformer.uuidMichoacan_de_ocampo, line);

            handleDistribution(state, desc, "MORELOS", MexicoConabioTransformer.uuidMorelos, line);

            handleDistribution(state, desc, "NAYARIT", MexicoConabioTransformer.uuidNayarit, line);

            handleDistribution(state, desc, "NUEVO LEON", MexicoConabioTransformer.uuidNuevo_leon, line);

            handleDistribution(state, desc, "OAXACA", MexicoConabioTransformer.uuidOaxaca, line);

            handleDistribution(state, desc, "PUEBLA", MexicoConabioTransformer.uuidPuebla, line);

            handleDistribution(state, desc, "QUERETARO DE ARTEAGA", MexicoConabioTransformer.uuidQueretaro_de_arteaga, line);

            handleDistribution(state, desc, "QUINTANA ROO", MexicoConabioTransformer.uuidQuintana_roo, line);

            handleDistribution(state, desc, "SAN LUIS POTOSI", MexicoConabioTransformer.uuidSan_luis_potosi, line);

            handleDistribution(state, desc, "SINALOA", MexicoConabioTransformer.uuidSinaloa, line);

            handleDistribution(state, desc, "SONORA", MexicoConabioTransformer.uuidSonora, line);

            handleDistribution(state, desc, "TABASCO", MexicoConabioTransformer.uuidTabasco, line);

            handleDistribution(state, desc, "TAMAULIPAS", MexicoConabioTransformer.uuidTamaulipas, line);

            handleDistribution(state, desc, "TLAXCALA", MexicoConabioTransformer.uuidTlaxcala, line);

            handleDistribution(state, desc, "VERACRUZ DE IGNACIO DE LA LLAVE", MexicoConabioTransformer.uuidVeracruz_de_ignacio_de_la_llave, line);

            handleDistribution(state, desc, "YUCATAN", MexicoConabioTransformer.uuidYucatan, line);

            handleDistribution(state, desc, "ZACATECAS", MexicoConabioTransformer.uuidZacatecas, line);

            getTaxonService().save(taxon);

        }

    }

    /**

     * @param state

     * @param refStr

     * @return

     */

    private Reference getReference(SimpleExcelTaxonImportState<CONFIG> state, String refStr) {

        if (StringUtils.isNoneBlank(refStr)){

            return null;

        }

        Reference ref = state.getReference(refStr);

        if (ref == null){

            ref = ReferenceFactory.newBook();

            ref.setTitleCache(refStr, true);

            state.putReference(refStr, ref);

        }

        return ref;

    }

    /**

     * @param desc

     * @param string

     * @param uuidUserDefinedAnnotationTypeVocabulary

     */

    private void handleDistribution(SimpleExcelTaxonImportState<CONFIG> state, TaxonDescription desc, String key,

            UUID uuid, String line) {

        Map<String, String> record = state.getOriginalRecord();

        String value = getValue(record, key);

        if ("1".equals(value)){

            NamedArea area = getNamedArea(state, uuid, null, null, null, null, null);

            Distribution dist = Distribution.NewInstance(area, PresenceAbsenceTerm.PRESENT());

            desc.addElement(dist);

        }else if (value != null){

            logger.warn(line + "Unrecognized distribution status '" + value + "' for " + key);

        }

    }

    /**

     * @param taxon

     * @return

     */

    private TaxonDescription getTaxonDescription(Taxon taxon) {

        if (!taxon.getDescriptions().isEmpty()){

            return taxon.getDescriptions().iterator().next();

        }else{

            TaxonDescription desc = TaxonDescription.NewInstance(taxon);

            return desc;

        }

    }

    /**

     * @param state

     */

    @SuppressWarnings("unchecked")

    private void initAreaVocabulary(SimpleExcelTaxonImportState<CONFIG> state) {

        if (stateAreasVoc == null){

            stateAreasVoc = (OrderedTermVocabulary<NamedArea>)this.getVocabularyService().find(MexicoConabioTransformer.uuidMexicanStatesVoc);

            if (stateAreasVoc == null){

                createStateAreasVoc(state);

            }

        }

    }

    /**

     * @param state

     * @return

     */

    @SuppressWarnings("unchecked")

    private void createStateAreasVoc(SimpleExcelTaxonImportState<CONFIG> state) {

        //voc

        URI termSourceUri = null;

        String label = "Mexican States";

        String description = "Mexican States as used by the CONABIO Rubiaceae database";

        stateAreasVoc = OrderedTermVocabulary.NewInstance(TermType.NamedArea,

                description, label, null, termSourceUri);

        stateAreasVoc.setUuid(MexicoConabioTransformer.uuidMexicanStatesVoc);

        Representation rep = Representation.NewInstance("Estados Méxicanos", "Estados Méxicanos", null, Language.SPANISH_CASTILIAN());

        stateAreasVoc.addRepresentation(rep);

        //mexico country

        String mexicoLabel = "Mexico (Country)";

        mexico = NamedArea.NewInstance(

                mexicoLabel, mexicoLabel, null);

        mexico.setUuid(MexicoConabioTransformer.uuidMexicoCountry);

        stateAreasVoc.addTerm(mexico);

         addMapping(mexico, "mex_adm0", "iso", "MEX");

         //Example with almost all areas is Chiococca alba

         addArea(state, "Aguascalientes", MexicoConabioTransformer.uuidAguascalientes);

         addArea(state, "Baja California", MexicoConabioTransformer.uuidBaja_california);

         addArea(state, "Baja California Sur", MexicoConabioTransformer.uuidBaja_california_sur);

         addArea(state, "Campeche", MexicoConabioTransformer.uuidCampeche);

         addArea(state, "Coahuila de Zaragoza", MexicoConabioTransformer.uuidCoahuila_de_zaragoza, "Coahuila");

         addArea(state, "Colima", MexicoConabioTransformer.uuidColima);

         addArea(state, "Chiapas", MexicoConabioTransformer.uuidChiapas);

         addArea(state, "Chihuahua", MexicoConabioTransformer.uuidChihuahua);

         addArea(state, "Distrito Federal", MexicoConabioTransformer.uuidDistrito_federal);

         addArea(state, "Durango", MexicoConabioTransformer.uuidDurango);

         addArea(state, "Guanajuato", MexicoConabioTransformer.uuidGuanajuato);

         addArea(state, "Guerrero", MexicoConabioTransformer.uuidGuerrero);

         addArea(state, "Hidalgo", MexicoConabioTransformer.uuidHidalgo);

         addArea(state, "Jalisco", MexicoConabioTransformer.uuidJalisco);

        //id_1

        addArea(state, "México", MexicoConabioTransformer.uuidMexico, null, 15);

        //id_1

        addArea(state, "Michoacan de Ocampo", MexicoConabioTransformer.uuidMichoacan_de_ocampo, "Michoacán", 16);

         addArea(state, "Morelos", MexicoConabioTransformer.uuidMorelos);

         addArea(state, "Nayarit", MexicoConabioTransformer.uuidNayarit);

        //gibt beim mapping vielleicht Probleme wg. des Accents

        //id_1

        addArea(state, "Nuevo Leon", MexicoConabioTransformer.uuidNuevo_leon, "Nuevo León", 19);

         addArea(state, "Oaxaca", MexicoConabioTransformer.uuidOaxaca);

         addArea(state, "Puebla", MexicoConabioTransformer.uuidPuebla);

        //id_1

        addArea(state, "Queretaro de Arteaga", MexicoConabioTransformer.uuidQueretaro_de_arteaga, "Querétaro", 22);

         addArea(state, "Quintana Roo", MexicoConabioTransformer.uuidQuintana_roo);

        //id_1

        addArea(state, "San Luis Potosí", MexicoConabioTransformer.uuidSan_luis_potosi,null ,24);

         addArea(state, "Sinaloa", MexicoConabioTransformer.uuidSinaloa);

         addArea(state, "Sonora", MexicoConabioTransformer.uuidSonora);

         addArea(state, "Tabasco", MexicoConabioTransformer.uuidTabasco);

         addArea(state, "Tamaulipas", MexicoConabioTransformer.uuidTamaulipas);

         addArea(state, "Tlaxcala", MexicoConabioTransformer.uuidTlaxcala);

         addArea(state, "Veracruz de Ignacio de la Llave", MexicoConabioTransformer.uuidVeracruz_de_ignacio_de_la_llave, "Veracruz");

        //??

        addArea(state, "Yucatán", MexicoConabioTransformer.uuidYucatan, null, 31);

         addArea(state, "Zacatecas", MexicoConabioTransformer.uuidZacatecas);

        this.getVocabularyService().save(stateAreasVoc);

        return;

    }

    private void addArea(SimpleExcelTaxonImportState<CONFIG> state, String areaLabel, UUID uuid) {

        addArea(state, areaLabel, uuid, areaLabel);  //short cut if label and mapping label are equal

    }

    private void addArea(SimpleExcelTaxonImportState<CONFIG> state, String areaLabel, UUID uuid, String mappingLabel) {

        addArea(state, areaLabel, uuid, mappingLabel, null);  //short cut if label and mapping label are equal

    }

    /**

     * @param state

     * @param string

     * @param uuidaguascalientes

     */

    private void addArea(SimpleExcelTaxonImportState<CONFIG> state, String areaLabel, UUID uuid, String mappingLabel, Integer id1) {

        String abbrev = null;

        NamedArea newArea = NamedArea.NewInstance(

                areaLabel, areaLabel, abbrev);

        newArea.setUuid(uuid);

        newArea.setPartOf(mexico);

        newArea.setLevel(NamedAreaLevel.STATE());

        newArea.setType(NamedAreaType.ADMINISTRATION_AREA());

        stateAreasVoc.addTerm(newArea);

        if (id1 != null){

            addMapping(newArea, "mex_adm1", "id_1", String.valueOf(id1));

        }else if (mappingLabel != null){

            addMapping(newArea, "mex_adm1", "name_1", mappingLabel);

        }

    }

    private void addMapping(NamedArea area, String mapping_layer, String mapping_field, String abbrev) {

        GeoServiceAreaAnnotatedMapping mapping = (GeoServiceAreaAnnotatedMapping)this.getBean("geoServiceAreaAnnotatedMapping");

        GeoServiceArea geoServiceArea = new GeoServiceArea();

        geoServiceArea.add(mapping_layer, mapping_field, abbrev);

        mapping.set(area, geoServiceArea);

    }

    @Override

    protected boolean isIgnore(SimpleExcelTaxonImportState<CONFIG> state) {

        return ! state.getConfig().isDoDistributions();

    }

}