Revision 9d685c8f
Added by Andreas Müller over 4 years ago
| app-import/src/main/java/eu/etaxonomy/cdm/io/redlist/gefaesspflanzen/excel/RedListGefaesspflanzenTaxonExcelImport.java | ||
|---|---|---|
| 25 | 25 |
import eu.etaxonomy.cdm.model.common.Language; |
| 26 | 26 |
import eu.etaxonomy.cdm.model.name.IBotanicalName; |
| 27 | 27 |
import eu.etaxonomy.cdm.model.name.Rank; |
| 28 |
import eu.etaxonomy.cdm.model.name.TaxonName; |
|
| 28 | 29 |
import eu.etaxonomy.cdm.model.name.TaxonNameFactory; |
| 29 | 30 |
import eu.etaxonomy.cdm.model.reference.Reference; |
| 30 | 31 |
import eu.etaxonomy.cdm.model.taxon.Classification; |
| ... | ... | |
| 156 | 157 |
} |
| 157 | 158 |
|
| 158 | 159 |
|
| 159 |
|
|
| 160 | 160 |
nameStr = CdmUtils.concat(" ", nameStr, authorStr);
|
| 161 | 161 |
boolean isAuct = nameStr.endsWith("auct.");
|
| 162 |
boolean isGrex = nameStr.contains(" grex ");
|
|
| 163 |
boolean isSublusus = nameStr.contains(" sublusus ");
|
|
| 164 | 162 |
nameStr = normalizeNameStr(nameStr); |
| 165 |
boolean isRankLessInfraSpec = nameStr.matches("[A-Z][a-z]+ [a-z]+ \\[ranglos\\]+ [a-z]+ .*");
|
|
| 166 |
boolean isRankLessInfraGeneric = nameStr.matches("[A-Z][a-z]+ \\[ranglos\\]+ [A-Z][a-z]+ .*");
|
|
| 167 |
if (isRankLessInfraSpec){
|
|
| 168 |
nameStr.replace(" [ranglos] ", " subsp. ");
|
|
| 169 |
}else if (isRankLessInfraGeneric){
|
|
| 170 |
nameStr.replace(" [ranglos] ", " subg. ");
|
|
| 171 |
} |
|
| 172 | 163 |
|
| 173 | 164 |
Rank rank = Rank.SPECIES(); |
| 174 | 165 |
IBotanicalName name = (IBotanicalName)parser.parseFullName(nameStr, state.getConfig().getNomenclaturalCode(), rank); |
| ... | ... | |
| 176 | 167 |
name = deduplicationHelper.getExistingName(state, name); |
| 177 | 168 |
if (name.isProtectedTitleCache()){
|
| 178 | 169 |
logger.warn(line + "Name could not be parsed: " + nameStr); |
| 179 |
}else if (isSublusus){
|
|
| 180 |
name.setRank(Rank.SUBLUSUS()); |
|
| 181 |
}else if (isGrex){
|
|
| 182 |
name.setRank(Rank.GREX()); |
|
| 183 |
}else if (isRankLessInfraSpec){
|
|
| 184 |
name.setRank(Rank.UNRANKED_INFRASPECIFIC()); |
|
| 185 |
}else if (isRankLessInfraGeneric){
|
|
| 186 |
name.setRank(Rank.UNRANKED_INFRAGENERIC()); |
|
| 187 |
} |
|
| 188 |
|
|
| 189 |
String titleCache = name.getTitleCache(); |
|
| 190 |
vollName = vollName.replace(" agg.", " aggr.").replace(" (E)", "");
|
|
| 191 |
if (!titleCache.equals(vollName)){
|
|
| 192 |
logger.warn("Vollname weicht ab: " + vollName +" <-> " + titleCache);
|
|
| 193 | 170 |
} |
| 194 | 171 |
|
| 195 | 172 |
deduplicationHelper.replaceAuthorNamesAndNomRef(state, name); |
| ... | ... | |
| 213 | 190 |
|
| 214 | 191 |
taxon.addImportSource(noStr, getNamespace(state.getConfig()), getSourceCitation(state), null); |
| 215 | 192 |
|
| 193 |
checkVollname(state, taxon, vollName, sensuStr, isAuct); |
|
| 216 | 194 |
return taxon; |
| 217 | 195 |
} |
| 218 | 196 |
|
| 219 | 197 |
|
| 220 | 198 |
|
| 199 |
/** |
|
| 200 |
* @param state |
|
| 201 |
* @param taxon |
|
| 202 |
* @param sensuStr |
|
| 203 |
* @param isAuct |
|
| 204 |
* @param vollName |
|
| 205 |
*/ |
|
| 206 |
private void checkVollname(SimpleExcelTaxonImportState<CONFIG> state, TaxonBase<?> taxon, String vollName, String sensuStr, boolean isAuct) {
|
|
| 207 |
TaxonName name = taxon.getName(); |
|
| 208 |
String titleCache = (sensuStr == null && !isAuct) ? name.getTitleCache() : taxon.getTitleCache(); |
|
| 209 |
vollName = vollName.replace(" agg.", " aggr.").replace(" (E)", "");
|
|
| 210 |
if (!titleCache.equals(vollName)){
|
|
| 211 |
logger.warn("Vollname weicht ab: " + vollName +" <-> " + titleCache);
|
|
| 212 |
} |
|
| 213 |
} |
|
| 214 |
|
|
| 215 |
|
|
| 221 | 216 |
/** |
| 222 | 217 |
* @param nameStr |
| 223 | 218 |
*/ |
Also available in: Unified diff
ref 5448 latest changes to Geaessplanzenimport Excel