Project

General

Profile

Download (5.41 KB) Statistics
| Branch: | Revision:
1
// $Id$
2
/**
3
* Copyright (C) 2009 EDIT
4
* European Distributed Institute of Taxonomy 
5
* http://www.e-taxonomy.eu
6
* 
7
* The contents of this file are subject to the Mozilla Public License Version 1.1
8
* See LICENSE.TXT at the top of this package for the full license terms.
9
*/
10
package eu.etaxonomy.cdm.app.pesi;
11

    
12
import org.apache.log4j.Logger;
13

    
14
import eu.etaxonomy.cdm.app.common.CdmDestinations;
15
import eu.etaxonomy.cdm.database.ICdmDataSource;
16
import eu.etaxonomy.cdm.io.common.CdmDefaultExport;
17
import eu.etaxonomy.cdm.io.common.DbExportConfiguratorBase.IdType;
18
import eu.etaxonomy.cdm.io.common.IExportConfigurator.CHECK;
19
import eu.etaxonomy.cdm.io.common.IExportConfigurator.DO_REFERENCES;
20
import eu.etaxonomy.cdm.io.common.Source;
21
import eu.etaxonomy.cdm.io.pesi.out.PesiExportConfigurator;
22
import eu.etaxonomy.cdm.io.pesi.out.PesiTransformer;
23
import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
24

    
25
/**
26
 * @author a.mueller
27
 * @author e.-m.lee
28
 * @date 16.02.2010
29
 *
30
 */
31
public class PesiExportActivatorEM {
32
	@SuppressWarnings("unused")
33
	private static final Logger logger = Logger.getLogger(PesiExportActivatorEM.class);
34

    
35
	//database validation status (create, update, validate ...)
36
	static final Source pesiDestination = PesiDestinations.pesi_test_local_CDM_EM2PESI();
37
//	static final Source pesiDestination = PesiDestinations.pesi_test_local_CDM_FE2PESI();
38
//	static final Source pesiDestination = PesiDestinations.pesi_test_local_CDM_ERMS2PESI();
39
	
40
	static final ICdmDataSource cdmSource = CdmDestinations.cdm_pesi_erms();
41
	//Taxon names can't be mapped to their CDM ids as PESI Taxon table mainly holds taxa and there IDs. We ad nameIdStart to the TaxonName id to get a unique id
42
	static final int nameIdStart = 10000000;
43
	static final IdType idType = IdType.CDM_ID_WITH_EXCEPTIONS;
44

    
45
	static final int partitionSize = 1000;
46
	
47
	//check - export
48
	static final CHECK check = CHECK.EXPORT_WITHOUT_CHECK;
49

    
50
	//NomenclaturalCode
51
	static final NomenclaturalCode nomenclaturalCode  = NomenclaturalCode.ICNAFP;
52
	
53
	static final boolean deleteAll = true;
54
	
55
	
56
// ****************** ALL *****************************************
57
	
58
	//references
59
	static final DO_REFERENCES doReferences =  DO_REFERENCES.ALL;
60
	
61
	//taxa
62
	static final boolean doTaxa = true;
63
	static final boolean doPureNames = true;
64
	static final boolean doTreeIndex = true;
65
	static final boolean doParentAndBiota = true;
66
	static final boolean doRank = true;
67
	static final boolean doInferredSynonyms = false;   //no inferred synonyms in E+M
68
	static final boolean doRelTaxa = true;
69
	static final boolean doDescriptions = true;
70
	
71
	static final boolean doNotes = true;
72
	static final boolean doNoteSources = true;
73
	static final boolean doAdditionalTaxonSource = true;
74
	static final boolean doOccurrence = true;
75
	static final boolean doOccurrenceSource = true;
76
	static final boolean doImage = true;
77
	
78

    
79
// ************************ NONE **************************************** //
80
	
81
//	//references
82
//	static final DO_REFERENCES doReferences =  DO_REFERENCES.NONE;
83
//	
84
//	//taxa
85
//	static final boolean doTaxa = false;
86
//	static final boolean doPureNames = false;
87
//	static final boolean doRelTaxa = false;
88
//	static final boolean doNotes = false;
89
//	static final boolean doNoteSources = false;
90
//	static final boolean doAdditionalTaxonSource = false;
91
//	static final boolean doOccurrence = false;
92
//	static final boolean doOccurrenceSource = false;
93
//	static final boolean doImage = false;
94
//	static final boolean doTreeIndex = false;
95
//	static final boolean doRank = true;
96
//	static final boolean doInferredSynonyms = true;
97
	
98
	
99
	public boolean 	doExport(ICdmDataSource source){
100
		System.out.println("Start export to PESI ("+ pesiDestination.getDatabase() + ") ...");
101
		
102
		//make PESI Source
103
		Source destination = pesiDestination;
104
		PesiTransformer transformer = new PesiTransformer(destination);
105
		
106
		PesiExportConfigurator config = PesiExportConfigurator.NewInstance(destination, source, transformer);
107
		
108
		config.setDoTaxa(doTaxa);
109
		config.setDoPureNames(doPureNames);
110
		config.setDoRelTaxa(doRelTaxa);
111
		config.setDoOccurrence(doOccurrence);
112
		config.setDoReferences(doReferences);
113
		config.setDoImages(doImage);
114
		config.setDoNotes(doNotes);
115
		config.setDoNoteSources(doNoteSources);
116
		config.setDoOccurrenceSource(doOccurrenceSource);
117
		config.setDoTreeIndex(doTreeIndex);
118
		config.setDoTreeIndex(doParentAndBiota);
119
		config.setDoRank(doRank);
120
		config.setDoInferredSynonyms(doInferredSynonyms);
121
		config.setDoDescription(doDescriptions);
122
		
123
		config.setCheck(check);
124
		config.setLimitSave(partitionSize);
125
		config.setIdType(idType);
126
		config.setNameIdStart(nameIdStart);
127
		if (deleteAll){
128
			destination.update("EXEC sp_deleteAllData");
129
		}
130

    
131
		// invoke export
132
		CdmDefaultExport<PesiExportConfigurator> pesiExport = new CdmDefaultExport<PesiExportConfigurator>();
133
		boolean result = pesiExport.invoke(config);
134
		
135
		System.out.println("End export to PESI ("+ destination.getDatabase() + ")..." + (result? "(successful)":"(with errors)"));
136
		return result;
137
	}
138
		
139
	/**
140
	 * @param args
141
	 */
142
	public static void main(String[] args) {
143
		PesiExportActivatorEM ex = new PesiExportActivatorEM();
144
		ICdmDataSource source = CdmDestinations.chooseDestination(args) != null ? CdmDestinations.chooseDestination(args) : cdmSource;
145
//		Connection con = pesiDestination.getConnection();
146
//		System.out.println(con);
147
		ex.doExport(source);
148
	}
149

    
150
}
(6-6/10)