1
|
/**
|
2
|
* Copyright (C) 2007 EDIT
|
3
|
* European Distributed Institute of Taxonomy
|
4
|
* http://www.e-taxonomy.eu
|
5
|
*
|
6
|
* The contents of this file are subject to the Mozilla Public License Version 1.1
|
7
|
* See LICENSE.TXT at the top of this package for the full license terms.
|
8
|
*/
|
9
|
|
10
|
package eu.etaxonomy.cdm.io.redlist.gefaesspflanzen;
|
11
|
|
12
|
import java.sql.ResultSet;
|
13
|
import java.sql.SQLException;
|
14
|
import java.util.HashMap;
|
15
|
import java.util.Map;
|
16
|
|
17
|
import org.apache.log4j.Logger;
|
18
|
import org.springframework.stereotype.Component;
|
19
|
|
20
|
import eu.etaxonomy.cdm.io.common.DbImportBase;
|
21
|
import eu.etaxonomy.cdm.io.common.IPartitionedIO;
|
22
|
import eu.etaxonomy.cdm.io.common.ResultSetPartitioner;
|
23
|
import eu.etaxonomy.cdm.model.common.CdmBase;
|
24
|
import eu.etaxonomy.cdm.model.taxon.Classification;
|
25
|
import eu.etaxonomy.cdm.model.taxon.Synonym;
|
26
|
import eu.etaxonomy.cdm.model.taxon.Taxon;
|
27
|
import eu.etaxonomy.cdm.model.taxon.TaxonBase;
|
28
|
|
29
|
/**
|
30
|
*
|
31
|
* @author pplitzner
|
32
|
* @date Mar 1, 2016
|
33
|
*
|
34
|
*/
|
35
|
|
36
|
@Component
|
37
|
@SuppressWarnings("serial")
|
38
|
public class RedListGefaesspflanzenImportClassification extends DbImportBase<RedListGefaesspflanzenImportState, RedListGefaesspflanzenImportConfigurator> {
|
39
|
|
40
|
private static final Logger logger = Logger.getLogger(RedListGefaesspflanzenImportClassification.class);
|
41
|
|
42
|
private static final String tableName = "Rote Liste Gefäßpflanzen";
|
43
|
|
44
|
private static final String pluralString = "classifications";
|
45
|
|
46
|
public RedListGefaesspflanzenImportClassification() {
|
47
|
super(tableName, pluralString);
|
48
|
}
|
49
|
|
50
|
@Override
|
51
|
protected String getIdQuery(RedListGefaesspflanzenImportState state) {
|
52
|
return "SELECT NAMNR "
|
53
|
+ "FROM V_TAXATLAS_D20_EXPORT t "
|
54
|
+ " ORDER BY NAMNR";
|
55
|
}
|
56
|
|
57
|
@Override
|
58
|
protected String getRecordQuery(RedListGefaesspflanzenImportConfigurator config) {
|
59
|
String result = " SELECT * "
|
60
|
+ " FROM V_TAXATLAS_D20_EXPORT t "
|
61
|
+ " WHERE t.NAMNR IN (@IDSET)";
|
62
|
result = result.replace("@IDSET", IPartitionedIO.ID_LIST_TOKEN);
|
63
|
return result;
|
64
|
}
|
65
|
|
66
|
@Override
|
67
|
protected void doInvoke(RedListGefaesspflanzenImportState state) {
|
68
|
makeClassification(state);
|
69
|
super.doInvoke(state);
|
70
|
}
|
71
|
|
72
|
|
73
|
@Override
|
74
|
public boolean doPartition(ResultSetPartitioner partitioner, RedListGefaesspflanzenImportState state) {
|
75
|
ResultSet rs = partitioner.getResultSet();
|
76
|
Classification classification = getClassificationService().load(state.getConfig().getClassificationUuid());
|
77
|
try {
|
78
|
while (rs.next()){
|
79
|
makeSingleTaxonNode(state, rs, classification);
|
80
|
|
81
|
}
|
82
|
} catch (SQLException e) {
|
83
|
e.printStackTrace();
|
84
|
}
|
85
|
|
86
|
getClassificationService().saveOrUpdate(classification);
|
87
|
return true;
|
88
|
}
|
89
|
|
90
|
private void makeSingleTaxonNode(RedListGefaesspflanzenImportState state, ResultSet rs, Classification classification)
|
91
|
throws SQLException {
|
92
|
long id = rs.getLong("NAMNR");
|
93
|
long parentId = rs.getLong("LOWER");
|
94
|
String gueltString = rs.getString("GUELT");
|
95
|
|
96
|
TaxonBase taxonBase = getTaxonService().load(state.getTaxonMap().get(id));
|
97
|
Taxon parent = (Taxon) getTaxonService().load(state.getTaxonMap().get(parentId));
|
98
|
|
99
|
if(taxonBase.isInstanceOf(Taxon.class)){
|
100
|
classification.addParentChild(parent, (Taxon)taxonBase, null, null);
|
101
|
}
|
102
|
else if(taxonBase.isInstanceOf(Synonym.class)){
|
103
|
if(gueltString.equals("b")){
|
104
|
//TODO
|
105
|
}
|
106
|
else{
|
107
|
//TODO: how to correctly add a synonym?
|
108
|
parent.addHomotypicSynonym((Synonym) taxonBase, null, null);
|
109
|
}
|
110
|
}
|
111
|
}
|
112
|
|
113
|
@Override
|
114
|
public Map<Object, Map<String, ? extends CdmBase>> getRelatedObjectsForPartition(ResultSet rs,
|
115
|
RedListGefaesspflanzenImportState state) {
|
116
|
Map<Object, Map<String, ? extends CdmBase>> result = new HashMap<>();
|
117
|
return result;
|
118
|
}
|
119
|
|
120
|
private void makeClassification(RedListGefaesspflanzenImportState state) {
|
121
|
Classification classification = Classification.NewInstance(state.getConfig().getClassificationName());
|
122
|
classification.setUuid(state.getConfig().getClassificationUuid());
|
123
|
getClassificationService().save(classification);
|
124
|
}
|
125
|
|
126
|
@Override
|
127
|
protected boolean doCheck(RedListGefaesspflanzenImportState state) {
|
128
|
return false;
|
129
|
}
|
130
|
|
131
|
@Override
|
132
|
protected boolean isIgnore(RedListGefaesspflanzenImportState state) {
|
133
|
return false;
|
134
|
}
|
135
|
|
136
|
}
|