Project

General

Profile

Download (5.16 KB) Statistics
| Branch: | Revision:
1
// $Id$
2
/**
3
* Copyright (C) 2009 EDIT
4
* European Distributed Institute of Taxonomy 
5
* http://www.e-taxonomy.eu
6
* 
7
* The contents of this file are subject to the Mozilla Public License Version 1.1
8
* See LICENSE.TXT at the top of this package for the full license terms.
9
*/
10
package eu.etaxonomy.cdm.app.pesi;
11

    
12
import org.apache.log4j.Logger;
13

    
14
import eu.etaxonomy.cdm.app.common.CdmDestinations;
15
import eu.etaxonomy.cdm.database.ICdmDataSource;
16
import eu.etaxonomy.cdm.io.common.CdmDefaultExport;
17
import eu.etaxonomy.cdm.io.common.DbExportConfiguratorBase.IdType;
18
import eu.etaxonomy.cdm.io.common.IExportConfigurator.CHECK;
19
import eu.etaxonomy.cdm.io.common.IExportConfigurator.DO_REFERENCES;
20
import eu.etaxonomy.cdm.io.common.Source;
21
import eu.etaxonomy.cdm.io.common.mapping.out.IExportTransformer;
22
import eu.etaxonomy.cdm.io.pesi.out.PesiExportConfigurator;
23
import eu.etaxonomy.cdm.io.pesi.out.PesiTransformer;
24
import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
25

    
26
/**
27
 * @author a.mueller
28
 * @author e.-m.lee
29
 * @date 16.02.2010
30
 *
31
 */
32
public class PesiExportActivatorEM {
33
	@SuppressWarnings("unused")
34
	private static final Logger logger = Logger.getLogger(PesiExportActivatorEM.class);
35

    
36
	//database validation status (create, update, validate ...)
37
	static final Source pesiDestination = PesiDestinations.pesi_test_local_CDM_EM2PESI_tmp();
38
//	static final Source pesiDestination = PesiDestinations.pesi_test_local_CDM_FE2PESI();
39
//	static final Source pesiDestination = PesiDestinations.pesi_test_local_CDM_ERMS2PESI();
40
	
41
	static final ICdmDataSource cdmSource = CdmDestinations.cdm_test_local_mysql_test();
42
	//Taxon names can't be mapped to their CDM ids as PESI Taxon table mainly holds taxa and there IDs. We ad nameIdStart to the TaxonName id to get a unique id
43
	static final int nameIdStart = 10000000;
44
	static final IdType idType = IdType.CDM_ID_WITH_EXCEPTIONS;
45

    
46
	static final int partitionSize = 1000;
47
	
48
	//check - export
49
	static final CHECK check = CHECK.EXPORT_WITHOUT_CHECK;
50

    
51
	//NomeclaturalCode
52
	static final NomenclaturalCode nomenclaturalCode  = NomenclaturalCode.ICBN;
53
	
54
	static final boolean deleteAll = true;
55
	
56
	
57
// ****************** ALL *****************************************
58
	
59
	//references
60
	static final DO_REFERENCES doReferences =  DO_REFERENCES.ALL;
61
	
62
	//taxa
63
	static final boolean doTaxa = true;
64
	static final boolean doRelTaxa = true;
65
	static final boolean doTreeIndex = false;
66
	static final boolean doRank = false;
67
	static final boolean doInferredSynonyms = false;
68
	static final boolean doDescriptions = true;
69
	
70
	static final boolean doNotes = true;
71
	static final boolean doNoteSources = true;
72
	static final boolean doAdditionalTaxonSource = true;
73
	static final boolean doOccurrence = true;
74
	static final boolean doOccurrenceSource = true;
75
	static final boolean doImage = true;
76
	
77

    
78
// ************************ NONE **************************************** //
79
	
80
//	//references
81
//	static final DO_REFERENCES doReferences =  DO_REFERENCES.NONE;
82
//	
83
//	//taxa
84
//	static final boolean doTaxa = false;
85
//	static final boolean doRelTaxa = false;
86
//	static final boolean doNotes = false;
87
//	static final boolean doNoteSources = false;
88
//	static final boolean doAdditionalTaxonSource = false;
89
//	static final boolean doOccurrence = false;
90
//	static final boolean doOccurrenceSource = false;
91
//	static final boolean doImage = false;
92
//	static final boolean doTreeIndex = true;
93
//	static final boolean doRank = true;
94
//	static final boolean doInferredSynonyms = true;
95
	
96
	
97
	public boolean 	doExport(ICdmDataSource source){
98
		System.out.println("Start export to PESI ("+ pesiDestination.getDatabase() + ") ...");
99
		
100
		//make PESI Source
101
		Source destination = pesiDestination;
102
		PesiTransformer transformer = new PesiTransformer(destination);
103
		
104
		PesiExportConfigurator config = PesiExportConfigurator.NewInstance(destination, source, transformer);
105
		
106
		config.setDoTaxa(doTaxa);
107
		config.setDoRelTaxa(doRelTaxa);
108
		config.setDoOccurrence(doOccurrence);
109
		config.setDoReferences(doReferences);
110
		config.setDoImages(doImage);
111
		config.setDoNotes(doNotes);
112
		config.setDoNoteSources(doNoteSources);
113
		config.setDoOccurrenceSource(doOccurrenceSource);
114
		config.setDoTreeIndex(doTreeIndex);
115
		config.setDoRank(doRank);
116
		config.setDoInferredSynonyms(doInferredSynonyms);
117
		config.setDoDescription(doDescriptions);
118
		
119
		config.setCheck(check);
120
		config.setLimitSave(partitionSize);
121
		config.setIdType(idType);
122
		config.setNameIdStart(nameIdStart);
123
		if (deleteAll){
124
			destination.update("EXEC sp_deleteAllData");
125
		}
126

    
127
		// invoke export
128
		CdmDefaultExport<PesiExportConfigurator> pesiExport = new CdmDefaultExport<PesiExportConfigurator>();
129
		boolean result = pesiExport.invoke(config);
130
		
131
		System.out.println("End export to PESI ("+ destination.getDatabase() + ")..." + (result? "(successful)":"(with errors)"));
132
		return result;
133
	}
134
		
135
	/**
136
	 * @param args
137
	 */
138
	public static void main(String[] args) {
139
		PesiExportActivatorEM ex = new PesiExportActivatorEM();
140
		ICdmDataSource source = CdmDestinations.chooseDestination(args) != null ? CdmDestinations.chooseDestination(args) : cdmSource;
141

    
142
		ex.doExport(source);
143
	}
144

    
145
}
(6-6/8)