Revision 94f696f9
Added by Katja Luther about 8 years ago
| cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/faunaEuropaea/FaunaEuropaeaDistributionImport.java | ||
|---|---|---|
| 24 | 24 |
|
| 25 | 25 |
import eu.etaxonomy.cdm.io.common.Source; |
| 26 | 26 |
import eu.etaxonomy.cdm.model.common.CdmBase; |
| 27 |
import eu.etaxonomy.cdm.model.common.TermType; |
|
| 28 |
import eu.etaxonomy.cdm.model.common.TermVocabulary; |
|
| 27 | 29 |
import eu.etaxonomy.cdm.model.description.Distribution; |
| 28 | 30 |
import eu.etaxonomy.cdm.model.description.PresenceAbsenceTerm; |
| 29 | 31 |
import eu.etaxonomy.cdm.model.description.TaxonDescription; |
| ... | ... | |
| 99 | 101 |
//commitTransaction(txStatus); |
| 100 | 102 |
|
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// FaunaEuropaeaTransformer.setUUIDs(noDataUuid); |
| 104 |
logger.info("create termvoc");
|
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createTermVocabulary(txStatus, state); |
|
| 102 | 106 |
|
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FaunaEuropaeaImportConfigurator fauEuConfig = state.getConfig(); |
| 104 | 108 |
Source source = fauEuConfig.getSource(); |
| ... | ... | |
| 233 | 237 |
return; |
| 234 | 238 |
} |
| 235 | 239 |
|
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private void commitTaxaAndDistribution( |
|
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/** |
|
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* |
|
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*/ |
|
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private void createTermVocabulary(TransactionStatus txStatus, FaunaEuropaeaImportState state) {
|
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TermVocabulary<NamedArea> faunaEuAreaVocabulary = TermVocabulary.NewInstance(TermType.NamedArea, "Areas for Fauna Europaea distribution data", "FE areas", "FE", null); |
|
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|
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NamedArea area; |
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|
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area =NamedArea.NewInstance(null, "Andorra", "AD"); |
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area.setUuid(UUID.randomUUID()); |
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area.setIdInVocabulary("AD");
|
|
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state.putNamedArea(area); |
|
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faunaEuAreaVocabulary.addTerm(area); |
|
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area = NamedArea.NewInstance(null, "Albania", "AL"); |
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area.setIdInVocabulary("AL");
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area.setUuid(UUID.randomUUID()); |
|
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state.putNamedArea(area); |
|
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faunaEuAreaVocabulary.addTerm(area); |
|
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area = NamedArea.NewInstance(null, "Austria", "AT"); |
|
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area.setIdInVocabulary("AT");
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area.setUuid(UUID.randomUUID()); |
|
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state.putNamedArea(area); |
|
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faunaEuAreaVocabulary.addTerm(area); |
|
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area = NamedArea.NewInstance(null, "Bosnia and Herzegovina", "BA"); |
|
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area.setUuid(UUID.randomUUID()); |
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area.setIdInVocabulary("BA");
|
|
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state.putNamedArea(area); |
|
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faunaEuAreaVocabulary.addTerm(area); |
|
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area = NamedArea.NewInstance(null, "Belgium", "BE"); |
|
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area.setUuid(UUID.randomUUID()); |
|
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area.setIdInVocabulary("BE");
|
|
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state.putNamedArea(area); |
|
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faunaEuAreaVocabulary.addTerm(area); |
|
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area = NamedArea.NewInstance(null, "Bulgaria", "BG"); |
|
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area.setUuid(UUID.randomUUID()); |
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area.setIdInVocabulary("BG");
|
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state.putNamedArea(area); |
|
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faunaEuAreaVocabulary.addTerm(area); |
|
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area = NamedArea.NewInstance(null, "Belarus", "BY"); |
|
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area.setUuid(UUID.randomUUID()); |
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area.setIdInVocabulary("BY");
|
|
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state.putNamedArea(area); |
|
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faunaEuAreaVocabulary.addTerm(area); |
|
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area = NamedArea.NewInstance(null, "Switzerland", "CH"); |
|
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area.setUuid(UUID.randomUUID()); |
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area.setIdInVocabulary("CH");
|
|
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state.putNamedArea(area); |
|
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faunaEuAreaVocabulary.addTerm(area); |
|
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area = NamedArea.NewInstance(null, "Cyprus", "CY"); |
|
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area.setUuid(UUID.randomUUID()); |
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area.setIdInVocabulary("CY");
|
|
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state.putNamedArea(area); |
|
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faunaEuAreaVocabulary.addTerm(area); |
|
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area = NamedArea.NewInstance(null, "Czech Republic", "CZ"); |
|
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area.setUuid(UUID.randomUUID()); |
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area.setIdInVocabulary("CZ");
|
|
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state.putNamedArea(area); |
|
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faunaEuAreaVocabulary.addTerm(area); |
|
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area = NamedArea.NewInstance(null, "Germany", "DE"); |
|
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area.setUuid(UUID.randomUUID()); |
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area.setIdInVocabulary("DE");
|
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state.putNamedArea(area); |
|
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faunaEuAreaVocabulary.addTerm(area); |
|
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area = NamedArea.NewInstance("Incl. Bornholm I.", "Danish mainland", "DK-DEN");
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area.setUuid(UUID.randomUUID()); |
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area.setIdInVocabulary("DK-DEN");
|
|
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state.putNamedArea(area); |
|
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faunaEuAreaVocabulary.addTerm(area); |
|
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area = NamedArea.NewInstance(null, "Faroe Is.", "DK-FOR"); |
|
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area.setUuid(UUID.randomUUID()); |
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area.setIdInVocabulary("DK-FOR");
|
|
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state.putNamedArea(area); |
|
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faunaEuAreaVocabulary.addTerm(area); |
|
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area = NamedArea.NewInstance(null, "Estonia", "EE"); |
|
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area.setUuid(UUID.randomUUID()); |
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area.setIdInVocabulary("EE");
|
|
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state.putNamedArea(area); |
|
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faunaEuAreaVocabulary.addTerm(area); |
|
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area = NamedArea.NewInstance("Incl. Mallorca I., Menorca I., and Pityuses Is.(=Ibiza I. + Formentera I.)", "Balearic Is.", "ES-BAL");
|
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area.setUuid(UUID.randomUUID()); |
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area.setIdInVocabulary("ES-BAL");
|
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state.putNamedArea(area); |
|
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faunaEuAreaVocabulary.addTerm(area); |
|
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area = NamedArea.NewInstance(null, "Canary Is.", "ES-CNY"); |
|
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area.setUuid(UUID.randomUUID()); |
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area.setIdInVocabulary("ES-CNY");
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state.putNamedArea(area); |
|
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faunaEuAreaVocabulary.addTerm(area); |
|
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area = NamedArea.NewInstance("Incl. Alboran I.", "Spanish mainland", "ES-SPA");
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area.setUuid(UUID.randomUUID()); |
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area.setIdInVocabulary("ES-SPA");
|
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state.putNamedArea(area); |
|
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faunaEuAreaVocabulary.addTerm(area); |
|
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area = NamedArea.NewInstance(null, "Finland", "FI"); |
|
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area.setUuid(UUID.randomUUID()); |
|
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area.setIdInVocabulary("FI");
|
|
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state.putNamedArea(area); |
|
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faunaEuAreaVocabulary.addTerm(area); |
|
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area = NamedArea.NewInstance(null, "Corsica", "FR-COR"); |
|
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area.setUuid(UUID.randomUUID()); |
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area.setIdInVocabulary("FR-COR");
|
|
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state.putNamedArea(area); |
|
| 342 |
faunaEuAreaVocabulary.addTerm(area); |
|
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area = NamedArea.NewInstance(null, "French mainland", "FR-FRA"); |
|
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area.setUuid(UUID.randomUUID()); |
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area.setIdInVocabulary("FR-FRA");
|
|
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state.putNamedArea(area); |
|
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faunaEuAreaVocabulary.addTerm(area); |
|
| 348 |
area = NamedArea.NewInstance("Incl. Jersey, Guernsey, Alderney", "Channel Is.", "GB-CI");
|
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area.setUuid(UUID.randomUUID()); |
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area.setIdInVocabulary("GB-CI");
|
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state.putNamedArea(area); |
|
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faunaEuAreaVocabulary.addTerm(area); |
|
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area = NamedArea.NewInstance(null, "Gibraltar", "GB-GI"); |
|
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area.setUuid(UUID.randomUUID()); |
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area.setIdInVocabulary("GB-GI");
|
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state.putNamedArea(area); |
|
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faunaEuAreaVocabulary.addTerm(area); |
|
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area = NamedArea.NewInstance("Incl. Shetlands, Orkneys, Hebrides and Man Is.", "Britain I.", "GB-GRB");
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area.setUuid(UUID.randomUUID()); |
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area.setIdInVocabulary("GB-GRB");
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state.putNamedArea(area); |
|
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faunaEuAreaVocabulary.addTerm(area); |
|
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area = NamedArea.NewInstance(null, "Northern Ireland", "GB-NI"); |
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area.setUuid(UUID.randomUUID()); |
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area.setIdInVocabulary("GB-NI");
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state.putNamedArea(area); |
|
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faunaEuAreaVocabulary.addTerm(area); |
|
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area = NamedArea.NewInstance("Incl. And?psara, ?yios Evstr?tios, Fo?rnoi, Ikar?a, Kh?os, "
|
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+ "L?svos, L?mnos, Oino?sa, Psar?, S?mos, Sk?pelos Kaloyeroi and other smaller islands", |
|
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"V?reion Aiy?ion (North Aegean Is.)", "GR-AEG"); |
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area.setUuid(UUID.randomUUID()); |
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area.setIdInVocabulary("GR-AEG");
|
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state.putNamedArea(area); |
|
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faunaEuAreaVocabulary.addTerm(area); |
|
| 375 |
area = NamedArea.NewInstance("Incl. Amorg?s, An?fi, ?nidros, ?ndros, And?paros, Deno?sa, Fol?gandros, ?os, Ir?klia, "
|
|
| 376 |
+ "K?ros, K?molos, K?a, K?thnos, M?los, M?konos, N?xos, P?ros, Pol?aigos, S?rifos, S?fnos, S?kinos, " |
|
| 377 |
+ "S?ros, Th?ra, T?nos, Yiar?s and other smaller islands", "Kikl?des (Cyclades Is.)", "GR-CYC"); |
|
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area.setUuid(UUID.randomUUID()); |
|
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area.setIdInVocabulary("GR-CYC");
|
|
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state.putNamedArea(area); |
|
| 381 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 382 |
area = NamedArea.NewInstance("Incl. Alimni?, ?rkoi, Astip?laia, Avgon?si, Ankathon?si, Farmakon?si, Ioinian?sia, "
|
|
| 383 |
+ "K?limnos, Kalol?mnos, Kandelio?sa, K?rpathos, K?sos, Kh?lki, Khamil?, K?naros, Kos, L?ros, Lev?tha, " |
|
| 384 |
+ "Lips?i, Mey?sti, N?siros, Ofido?sa, P?tmos,", "Dodek?nisos (Dodecanese Is.), R?dhos, Sar?a, S?mi, S?rina, T?los, Tr?a Nisi?, " |
|
| 385 |
+ "Yial? and other smaller islands ", "GR-DOD"); |
|
| 386 |
area.setUuid(UUID.randomUUID()); |
|
| 387 |
area.setIdInVocabulary("GR-DOD");
|
|
| 388 |
state.putNamedArea(area); |
|
| 389 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 390 |
area = NamedArea.NewInstance(" Incl. Andik?thira I., Evvia I., Ionian Is., Samothr?ki I., Northern Sporades Is., "
|
|
| 391 |
+ "Th?sos I.", "Greek mainland", "GR-GRC"); |
|
| 392 |
area.setUuid(UUID.randomUUID()); |
|
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area.setIdInVocabulary("GR-GRC");
|
|
| 394 |
state.putNamedArea(area); |
|
| 395 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 396 |
area = NamedArea.NewInstance("Incl. small adjacent islands like G?vdhos. Note that Andik?thira I. although being closer to Kriti "
|
|
| 397 |
+ "than to mainland, belongs to a mainland province", "Kriti (Crete)", "GR-KRI"); |
|
| 398 |
area.setUuid(UUID.randomUUID()); |
|
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area.setIdInVocabulary("GR-KRI");
|
|
| 400 |
state.putNamedArea(area); |
|
| 401 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 402 |
area = NamedArea.NewInstance(null, "Croatia", "HR"); |
|
| 403 |
area.setUuid(UUID.randomUUID()); |
|
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area.setIdInVocabulary("HR");
|
|
| 405 |
state.putNamedArea(area); |
|
| 406 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 407 |
area = NamedArea.NewInstance(null, "Hungary", "HU"); |
|
| 408 |
area.setUuid(UUID.randomUUID()); |
|
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area.setIdInVocabulary("HU");
|
|
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state.putNamedArea(area); |
|
| 411 |
faunaEuAreaVocabulary.addTerm(area); |
|
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area = NamedArea.NewInstance(null, "Ireland", "IE"); |
|
| 413 |
area.setUuid(UUID.randomUUID()); |
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area.setIdInVocabulary("IE");
|
|
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state.putNamedArea(area); |
|
| 416 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 417 |
area = NamedArea.NewInstance(null, "Iceland", "IS"); |
|
| 418 |
area.setUuid(UUID.randomUUID()); |
|
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area.setIdInVocabulary("IS");
|
|
| 420 |
state.putNamedArea(area); |
|
| 421 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 422 |
area = NamedArea.NewInstance(null, "Italian mainland", "IT-ITA"); |
|
| 423 |
area.setUuid(UUID.randomUUID()); |
|
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area.setIdInVocabulary("IT-ITA");
|
|
| 425 |
state.putNamedArea(area); |
|
| 426 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 427 |
area = NamedArea.NewInstance(null, "Sardinia", "IT-SAR"); |
|
| 428 |
area.setUuid(UUID.randomUUID()); |
|
| 429 |
area.setIdInVocabulary("IT-SAR");
|
|
| 430 |
state.putNamedArea(area); |
|
| 431 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 432 |
area = NamedArea.NewInstance(" Incl. adjacent Italian islands (Lipari Is., Ustica I., Egadi Is., "
|
|
| 433 |
+ "Pantelleria I., Pelagie Is.) ", "Sicily", "IT-SI"); |
|
| 434 |
area.setUuid(UUID.randomUUID()); |
|
| 435 |
area.setIdInVocabulary("IT-SI");
|
|
| 436 |
state.putNamedArea(area); |
|
| 437 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 438 |
area = NamedArea.NewInstance(null, "Liechtenstein", "LI"); |
|
| 439 |
area.setUuid(UUID.randomUUID()); |
|
| 440 |
area.setIdInVocabulary("LI");
|
|
| 441 |
state.putNamedArea(area); |
|
| 442 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 443 |
area = NamedArea.NewInstance(null, "Lithuania", "LT"); |
|
| 444 |
area.setUuid(UUID.randomUUID()); |
|
| 445 |
area.setIdInVocabulary("LT");
|
|
| 446 |
state.putNamedArea(area); |
|
| 447 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 448 |
area = NamedArea.NewInstance(null, "Luxembourg", "LU"); |
|
| 449 |
area.setUuid(UUID.randomUUID()); |
|
| 450 |
area.setIdInVocabulary("LU");
|
|
| 451 |
state.putNamedArea(area); |
|
| 452 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 453 |
area = NamedArea.NewInstance(null, "Latvia", "LV"); |
|
| 454 |
area.setUuid(UUID.randomUUID()); |
|
| 455 |
area.setIdInVocabulary("LV");
|
|
| 456 |
state.putNamedArea(area); |
|
| 457 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 458 |
area = NamedArea.NewInstance(null, "Monaco", "MC"); |
|
| 459 |
area.setUuid(UUID.randomUUID()); |
|
| 460 |
area.setIdInVocabulary("MC");
|
|
| 461 |
state.putNamedArea(area); |
|
| 462 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 463 |
area = NamedArea.NewInstance(null, "Moldova, Republic of", "MD"); |
|
| 464 |
area.setUuid(UUID.randomUUID()); |
|
| 465 |
area.setIdInVocabulary("MD");
|
|
| 466 |
state.putNamedArea(area); |
|
| 467 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 468 |
area = NamedArea.NewInstance(null, "Macedonia, the former Yugoslav Republic of", "MK"); |
|
| 469 |
area.setUuid(UUID.randomUUID()); |
|
| 470 |
area.setIdInVocabulary("MK");
|
|
| 471 |
state.putNamedArea(area); |
|
| 472 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 473 |
area = NamedArea.NewInstance(null, "Malta", "MT"); |
|
| 474 |
area.setUuid(UUID.randomUUID()); |
|
| 475 |
area.setIdInVocabulary("MT");
|
|
| 476 |
state.putNamedArea(area); |
|
| 477 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 478 |
area = NamedArea.NewInstance(null, "The Netherlands", "NL"); |
|
| 479 |
area.setUuid(UUID.randomUUID()); |
|
| 480 |
area.setIdInVocabulary("NL");
|
|
| 481 |
state.putNamedArea(area); |
|
| 482 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 483 |
area = NamedArea.NewInstance(null, "Norwegian mainland", "NO-NOR"); |
|
| 484 |
area.setUuid(UUID.randomUUID()); |
|
| 485 |
area.setIdInVocabulary("NO-NOR");
|
|
| 486 |
state.putNamedArea(area); |
|
| 487 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 488 |
area = NamedArea.NewInstance("Incl. Bear I.", "Svalbard & Jan Mayen", "NO-SVA");
|
|
| 489 |
area.setUuid(UUID.randomUUID()); |
|
| 490 |
area.setIdInVocabulary("NO-SVA");
|
|
| 491 |
state.putNamedArea(area); |
|
| 492 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 493 |
area = NamedArea.NewInstance(null, "Poland", "PL"); |
|
| 494 |
area.setUuid(UUID.randomUUID()); |
|
| 495 |
area.setIdInVocabulary("PL");
|
|
| 496 |
state.putNamedArea(area); |
|
| 497 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 498 |
area = NamedArea.NewInstance(null, "Azores Is.", "PT-AZO"); |
|
| 499 |
area.setUuid(UUID.randomUUID()); |
|
| 500 |
area.setIdInVocabulary("PT-AZO");
|
|
| 501 |
state.putNamedArea(area); |
|
| 502 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 503 |
area = NamedArea.NewInstance(null, "Madeira Is.", "PT-MDR"); |
|
| 504 |
area.setUuid(UUID.randomUUID()); |
|
| 505 |
area.setIdInVocabulary("PT-MDR");
|
|
| 506 |
state.putNamedArea(area); |
|
| 507 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 508 |
area = NamedArea.NewInstance(null, "Portuguese mainland", "PT-POR"); |
|
| 509 |
area.setUuid(UUID.randomUUID()); |
|
| 510 |
area.setIdInVocabulary("PT-POR");
|
|
| 511 |
state.putNamedArea(area); |
|
| 512 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 513 |
area = NamedArea.NewInstance(null, "Selvagens Is.", "PT-SEL"); |
|
| 514 |
area.setUuid(UUID.randomUUID()); |
|
| 515 |
area.setIdInVocabulary("PT-SEL");
|
|
| 516 |
state.putNamedArea(area); |
|
| 517 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 518 |
area = NamedArea.NewInstance(null, "Romania", "RO"); |
|
| 519 |
area.setUuid(UUID.randomUUID()); |
|
| 520 |
area.setIdInVocabulary("RO");
|
|
| 521 |
state.putNamedArea(area); |
|
| 522 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 523 |
area = NamedArea.NewInstance("Excl. Ushakova I. and Vize I.", "Franz Josef Land", "RU-FJL");
|
|
| 524 |
area.setUuid(UUID.randomUUID()); |
|
| 525 |
area.setIdInVocabulary("RU-FJL");
|
|
| 526 |
state.putNamedArea(area); |
|
| 527 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 528 |
area = NamedArea.NewInstance(null, "Kaliningrad Region", "RU-KGD"); |
|
| 529 |
area.setUuid(UUID.randomUUID()); |
|
| 530 |
area.setIdInVocabulary("RU-KGD");
|
|
| 531 |
state.putNamedArea(area); |
|
| 532 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 533 |
area = NamedArea.NewInstance(null, "Novaya Zemlya", "RU-NOZ"); |
|
| 534 |
area.setUuid(UUID.randomUUID()); |
|
| 535 |
area.setIdInVocabulary("RU-NOZ");
|
|
| 536 |
state.putNamedArea(area); |
|
| 537 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 538 |
area = NamedArea.NewInstance(null, "Central European Russia", "RU-RUC"); |
|
| 539 |
area.setUuid(UUID.randomUUID()); |
|
| 540 |
area.setIdInVocabulary("RU-RUC");
|
|
| 541 |
state.putNamedArea(area); |
|
| 542 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 543 |
area = NamedArea.NewInstance(null, "East European Russia", "RU-RUE"); |
|
| 544 |
area.setUuid(UUID.randomUUID()); |
|
| 545 |
area.setIdInVocabulary("RU-RUE");
|
|
| 546 |
state.putNamedArea(area); |
|
| 547 |
|
|
| 548 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 549 |
area = NamedArea.NewInstance(null, "North European Russia", "RU-RUN"); |
|
| 550 |
area.setUuid(UUID.randomUUID()); |
|
| 551 |
area.setIdInVocabulary("RU-RUN");
|
|
| 552 |
state.putNamedArea(area); |
|
| 553 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 554 |
area = NamedArea.NewInstance(null, "South European Russia", "RU-RUS"); |
|
| 555 |
area.setUuid(UUID.randomUUID()); |
|
| 556 |
area.setIdInVocabulary("RU-RUS");
|
|
| 557 |
state.putNamedArea(area); |
|
| 558 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 559 |
area = NamedArea.NewInstance(null, "Northwest European Russia", "RU-RUW"); |
|
| 560 |
area.setUuid(UUID.randomUUID()); |
|
| 561 |
area.setIdInVocabulary("RU-RUW");
|
|
| 562 |
state.putNamedArea(area); |
|
| 563 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 564 |
area = NamedArea.NewInstance("Incl. Gotland I.", "Sweden", "SE");
|
|
| 565 |
area.setUuid(UUID.randomUUID()); |
|
| 566 |
area.setIdInVocabulary("SE");
|
|
| 567 |
state.putNamedArea(area); |
|
| 568 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 569 |
area = NamedArea.NewInstance(null, "Slovenia", "SI"); |
|
| 570 |
area.setUuid(UUID.randomUUID()); |
|
| 571 |
area.setIdInVocabulary("SI");
|
|
| 572 |
state.putNamedArea(area); |
|
| 573 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 574 |
area = NamedArea.NewInstance(null, "Slovakia", "SK"); |
|
| 575 |
area.setUuid(UUID.randomUUID()); |
|
| 576 |
area.setIdInVocabulary("SK");
|
|
| 577 |
state.putNamedArea(area); |
|
| 578 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 579 |
area = NamedArea.NewInstance(null, "San Marino", "SM"); |
|
| 580 |
area.setUuid(UUID.randomUUID()); |
|
| 581 |
area.setIdInVocabulary("SM");
|
|
| 582 |
state.putNamedArea(area); |
|
| 583 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 584 |
area = NamedArea.NewInstance("Incl. Imroz I. - G?k?eada, but not those in the Sea of Marmara ",
|
|
| 585 |
"European Turkey", "TR-TUE"); |
|
| 586 |
area.setUuid(UUID.randomUUID()); |
|
| 587 |
area.setIdInVocabulary("TR-TUE");
|
|
| 588 |
state.putNamedArea(area); |
|
| 589 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 590 |
area = NamedArea.NewInstance(null, "Ukraine", "UA"); |
|
| 591 |
area.setUuid(UUID.randomUUID()); |
|
| 592 |
area.setIdInVocabulary("UA");
|
|
| 593 |
state.putNamedArea(area); |
|
| 594 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 595 |
area = NamedArea.NewInstance(null, "Vatican City", "VA"); |
|
| 596 |
area.setUuid(UUID.randomUUID()); |
|
| 597 |
area.setIdInVocabulary("VA");
|
|
| 598 |
state.putNamedArea(area); |
|
| 599 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 600 |
area = NamedArea.NewInstance("Incl. Serbia, Kosovo, Voivodina, Montenegro", "Yugoslavia", "YU");
|
|
| 601 |
area.setUuid(UUID.randomUUID()); |
|
| 602 |
area.setIdInVocabulary("YU");
|
|
| 603 |
state.putNamedArea(area); |
|
| 604 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 605 |
area = NamedArea.NewInstance(null, "Afro-tropical region", "AFR"); |
|
| 606 |
area.setUuid(UUID.randomUUID()); |
|
| 607 |
area.setIdInVocabulary("AFR");
|
|
| 608 |
state.putNamedArea(area); |
|
| 609 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 610 |
area = NamedArea.NewInstance(null, "Australian region", "AUS"); |
|
| 611 |
area.setUuid(UUID.randomUUID()); |
|
| 612 |
area.setIdInVocabulary("AUS");
|
|
| 613 |
state.putNamedArea(area); |
|
| 614 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 615 |
area = NamedArea.NewInstance("East of the border line here defined", "East Palaearctic", "EPA");
|
|
| 616 |
area.setUuid(UUID.randomUUID()); |
|
| 617 |
area.setIdInVocabulary("EPA");
|
|
| 618 |
state.putNamedArea(area); |
|
| 619 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 620 |
area = NamedArea.NewInstance("Not including Sinai Peninsula", "North Africa", "NAF");
|
|
| 621 |
area.setUuid(UUID.randomUUID()); |
|
| 622 |
area.setIdInVocabulary("NAF");
|
|
| 623 |
state.putNamedArea(area); |
|
| 624 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 625 |
area = NamedArea.NewInstance(null, "Nearctic region", "NEA"); |
|
| 626 |
area.setUuid(UUID.randomUUID()); |
|
| 627 |
area.setIdInVocabulary("NEA");
|
|
| 628 |
state.putNamedArea(area); |
|
| 629 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 630 |
area = NamedArea.NewInstance(null, "Neotropical region", "NEO"); |
|
| 631 |
area.setUuid(UUID.randomUUID()); |
|
| 632 |
area.setIdInVocabulary("NEO");
|
|
| 633 |
state.putNamedArea(area); |
|
| 634 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 635 |
area = NamedArea.NewInstance("Asian Turkey, Caucasian Russian republics, Georgia, Armenia, Azerbaijan, "
|
|
| 636 |
+ "Lebanon, Syria, Israel, Jordan, Sinai Peninsula (Egypt), Arabian peninsula, Iran, Iraq", |
|
| 637 |
"Near East", "NRE"); |
|
| 638 |
area.setUuid(UUID.randomUUID()); |
|
| 639 |
area.setIdInVocabulary("NRE");
|
|
| 640 |
state.putNamedArea(area); |
|
| 641 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 642 |
area = NamedArea.NewInstance(null, "Oriental region", "ORR"); |
|
| 643 |
area.setUuid(UUID.randomUUID()); |
|
| 644 |
area.setIdInVocabulary("ORR");
|
|
| 645 |
state.putNamedArea(area); |
|
| 646 |
faunaEuAreaVocabulary.addTerm(area); |
|
| 647 |
if (txStatus == null){
|
|
| 648 |
txStatus = startTransaction(); |
|
| 649 |
} |
|
| 650 |
//txStatus = startTransaction(); |
|
| 651 |
faunaEuAreaVocabulary = getVocabularyService().save(faunaEuAreaVocabulary); |
|
| 652 |
logger.info("save voc");
|
|
| 653 |
commitTransaction(txStatus); |
|
| 654 |
state.setAreaVoc(faunaEuAreaVocabulary); |
|
| 655 |
|
|
| 656 |
|
|
| 657 |
} |
|
| 658 |
|
|
| 659 |
private void commitTaxaAndDistribution( |
|
| 237 | 660 |
FaunaEuropaeaImportState state, |
| 238 | 661 |
Set<UUID> taxonUuids, |
| 239 | 662 |
Map<UUID, FaunaEuropaeaDistributionTaxon> fauEuTaxonMap, |
| ... | ... | |
| 289 | 712 |
presenceAbsenceStatus = FaunaEuropaeaTransformer.occStatus2PresenceAbsence(fauEuHelperDistribution.getOccurrenceStatusId()); |
| 290 | 713 |
|
| 291 | 714 |
|
| 292 |
namedArea = FaunaEuropaeaTransformer.areaId2TdwgArea(fauEuHelperDistribution); |
|
| 293 |
|
|
| 715 |
namedArea = state.areaId2NamedArea(fauEuHelperDistribution, state); |
|
| 294 | 716 |
if (namedArea == null){
|
| 295 |
UUID areaUuid= FaunaEuropaeaTransformer.getUUIDByAreaAbbr(fauEuHelperDistribution.getAreaCode()); |
|
| 296 |
if (areaUuid == null){
|
|
| 297 |
logger.warn("Area " + fauEuHelperDistribution.getAreaCode() + "not found in FE transformer");
|
|
| 298 |
} |
|
| 299 |
namedArea = getNamedArea(state, areaUuid, fauEuHelperDistribution.getAreaName(), fauEuHelperDistribution.getAreaName(), fauEuHelperDistribution.getAreaCode(), null, null); |
|
| 300 |
|
|
| 717 |
logger.warn("Area " + fauEuHelperDistribution.getAreaCode() + "not found in FE transformer");
|
|
| 718 |
} |
|
| 719 |
if (namedArea == null){
|
|
| 720 |
//UUID areaUuid= FaunaEuropaeaTransformer.getUUIDByAreaAbbr(fauEuHelperDistribution.getAreaCode()); |
|
| 721 |
//if (areaUuid == null){
|
|
| 722 |
//logger.warn("Area " + fauEuHelperDistribution.getAreaCode() + "not found in FE transformer");
|
|
| 723 |
// } |
|
| 724 |
// namedArea = getNamedArea(state, areaUuid, fauEuHelperDistribution.getAreaName(), fauEuHelperDistribution.getAreaName(), fauEuHelperDistribution.getAreaCode(), null, null, state.getAreaVoc(), TermMatchMode.UUID_ABBREVLABEL); |
|
| 725 |
// namedArea.setIdInVocabulary(fauEuHelperDistribution.getAreaCode()); |
|
| 726 |
// state.putNamedArea(namedArea); |
|
| 301 | 727 |
} |
| 302 | 728 |
|
| 303 | 729 |
newDistribution = Distribution.NewInstance(namedArea, presenceAbsenceStatus); |
| 304 | 730 |
newDistribution.setCreated(null); |
| 305 | 731 |
|
| 306 | 732 |
taxonDescription.addElement(newDistribution); |
| 733 |
|
|
| 307 | 734 |
} |
| 308 | 735 |
} |
| 309 | 736 |
} |
| 737 |
|
|
| 738 |
taxonDescription= null; |
|
| 739 |
newDistribution = null; |
|
| 740 |
namedArea= null; |
|
| 310 | 741 |
return taxonList; |
| 311 | 742 |
} |
| 312 | 743 |
|
Also available in: Unified diff
changes for fauna europaea import (misapplied names, improved taxonnode agent relationship)