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Revision 8fb964f0

Added by Andreas Müller over 4 years ago

ref #2826 cleanup

View differences:

cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/indexFungorum/IndexFungorumSupraGeneraImport.java
50 50 
		String strRecordQuery =
51 51 
			" SELECT * " +
52 52 
			" FROM [tblSupragenericNames] " +
53 
//			" WHERE ( dr.id IN (" + ID_LIST_TOKEN + ") )";
54 53 
			"";
55 54 
		return strRecordQuery;
56 55 
	}
......
59 58 
	protected void doInvoke(IndexFungorumImportState state) {
60 59 

  		




  61
  60
  
    
	    logger.info("Start supra genera ...");


  		




  62
  
  
    
		//handle source reference first


  		




  
  61
  
    

  		




  
  62
  
    
	    //handle source reference first


  		




  63
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		Reference sourceReference = state.getConfig().getSourceReference();


  		




  64
  64
  
    
		getReferenceService().save(sourceReference);


  		




  65
  65
  
    

  		




  ......




  77
  77
  
    

  		




  78
  78
  
    
				//Don't use (created by Marc): DisplayName, NomRefCache


  		




  79
  79
  
    

  		




  80
  
  
    
				Integer id = ((Number)rs.getObject(COL_RECORD_NUMBER)).intValue();


  		




  
  80
  
    
				Integer id = rs.getInt(COL_RECORD_NUMBER);


  		




  81
  81
  
    

  		




  82
  82
  
    
				String supragenericNames = rs.getString(SUPRAGENERIC_NAMES);


  		




  83
  
  
    
				//String preferredName = rs.getString("PreferredName");


  		




  84
  83
  
    
				Integer rankFk = rs.getInt("PESI_RankFk");


  		




  85
  84
  
    

  		




  86
  85
  
    
				//name


  		




  87
  86
  
    
				Rank rank = state.getTransformer().getRankByKey(String.valueOf(rankFk));


  		




  88
  87
  
    
				TaxonName name = TaxonNameFactory.NewBotanicalInstance(rank);


  		




  89
  88
  
    
				name.setGenusOrUninomial(supragenericNames);


  		




  90
  
  
    
				/*if (preferredName != null && !preferredName.equals(supragenericNames)){


  		




  91
  
  
    
					logger.warn("Suprageneric names and preferredName is not equal. This case is not yet handled by IF import. I take SupragenericNames for import. RECORD NUMBER" +id);


  		




  92
  
  
    
				}*/


  		




  93
  89
  
    

  		




  94
  90
  
    
				//taxon


  		




  95
  91
  
    
				Taxon taxon = Taxon.NewInstance(name, sourceReference);


  		




  96
  92
  
    
				//author + nom.ref.


  		




  97
  93
  
    
				makeAuthorAndPublication(state, rs, name);


  		




  98
  94
  
    
				//source


  		




  99
  
  
    
//				if (id != null){


  		




  100
  
  
    
					makeSource(state, taxon, id.intValue(), NAMESPACE_SUPRAGENERIC_NAMES );


  		




  101
  
  
    
//				} else{


  		




  102
  
  
    
//					makeSource(state, taxon, null, NAMESPACE_SUPRAGENERIC_NAMES);


  		




  103
  
  
    
//				}


  		




  
  95
  
    
				makeSource(state, taxon, id, NAMESPACE_SUPRAGENERIC_NAMES );


  		




  
  96
  
    

  		




  104
  97
  
    
				getTaxonService().saveOrUpdate(taxon);


  		




  105
  98
  
    
			}


  		




  106
  99
  
    
		} catch (Exception e) {


  		












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