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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.redlist.gefaesspflanzen;
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import java.sql.ResultSet;
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import java.sql.SQLException;
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import java.util.HashMap;
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import java.util.HashSet;
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import java.util.Map;
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import java.util.Set;
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import org.apache.log4j.Logger;
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import org.springframework.stereotype.Component;
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import eu.etaxonomy.cdm.io.common.DbImportBase;
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import eu.etaxonomy.cdm.io.common.IPartitionedIO;
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import eu.etaxonomy.cdm.io.common.ImportHelper;
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import eu.etaxonomy.cdm.io.common.ResultSetPartitioner;
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import eu.etaxonomy.cdm.io.common.mapping.UndefinedTransformerMethodException;
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import eu.etaxonomy.cdm.model.common.CdmBase;
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import eu.etaxonomy.cdm.model.name.NonViralName;
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import eu.etaxonomy.cdm.model.name.Rank;
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import eu.etaxonomy.cdm.model.taxon.Taxon;
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import eu.etaxonomy.cdm.model.taxon.TaxonBase;
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import eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl;
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/**
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*
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* @author pplitzner
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* @date Mar 1, 2016
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*
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*/
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@Component
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@SuppressWarnings("serial")
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public class RedListGefaesspflanzenImportTaxa extends DbImportBase<RedListGefaesspflanzenImportState, RedListGefaesspflanzenImportConfigurator> {
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private static final Logger logger = Logger.getLogger(RedListGefaesspflanzenImportTaxa.class);
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private static final String tableName = "Rote Liste Gefäßpflanzen";
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private static final String pluralString = "taxa";
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private static final String TAXON_NAMESPACE = "taxon";
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public RedListGefaesspflanzenImportTaxa() {
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super(tableName, pluralString);
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}
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@Override
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protected String getIdQuery(RedListGefaesspflanzenImportState state) {
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return "SELECT NAMNR "
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+ "FROM V_TAXATLAS_D20_EXPORT t "
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+ " ORDER BY NAMNR";
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}
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@Override
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protected String getRecordQuery(RedListGefaesspflanzenImportConfigurator config) {
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String result = " SELECT * "
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+ " FROM V_TAXATLAS_D20_EXPORT t "
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+ " WHERE t.NAMNR IN (@IDSET)";
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result = result.replace("@IDSET", IPartitionedIO.ID_LIST_TOKEN);
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return result;
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}
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@Override
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protected void doInvoke(RedListGefaesspflanzenImportState state) {
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super.doInvoke(state);
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}
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@Override
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public boolean doPartition(ResultSetPartitioner partitioner, RedListGefaesspflanzenImportState state) {
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ResultSet rs = partitioner.getResultSet();
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Set<TaxonBase> taxaToSave = new HashSet<>();
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try {
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while (rs.next()){
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makeSingleTaxon(state, rs, taxaToSave);
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}
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} catch (SQLException e) {
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e.printStackTrace();
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}
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getTaxonService().saveOrUpdate(taxaToSave);
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return true;
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}
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private void makeSingleTaxon(RedListGefaesspflanzenImportState state, ResultSet rs, Set<TaxonBase> taxaToSave)
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throws SQLException {
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long id = rs.getLong("NAMNR");
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String taxonNameString = rs.getString("TAXNAME");
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NonViralNameParserImpl parser = NonViralNameParserImpl.NewInstance();
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NonViralName<?> name = parser.parseFullName(taxonNameString);
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TaxonBase taxon = Taxon.NewInstance(name, null);
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taxaToSave.add(taxon);
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//id
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ImportHelper.setOriginalSource(taxon, state.getTransactionalSourceReference(), id, TAXON_NAMESPACE);
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ImportHelper.setOriginalSource(name, state.getTransactionalSourceReference(), id, TAXON_NAMESPACE);
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}
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private Rank makeRank(RedListGefaesspflanzenImportState state, String rankStr) {
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Rank rank = null;
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try {
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rank = state.getTransformer().getRankByKey(rankStr);
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} catch (UndefinedTransformerMethodException e) {
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e.printStackTrace();
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}
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return rank;
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}
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@Override
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public Map<Object, Map<String, ? extends CdmBase>> getRelatedObjectsForPartition(ResultSet rs,
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RedListGefaesspflanzenImportState state) {
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Map<Object, Map<String, ? extends CdmBase>> result = new HashMap<>();
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// Map<String, TeamOrPersonBase<?>> authorMap = new HashMap<>();
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// Set<String> authorKombSet = new HashSet<>();
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// Set<String> referenceIdSet = new HashSet<String>();
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//
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// try {
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// while (rs.next()){
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// String authorStr = rs.getString("tax_author_name");
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// authorKombSet.add(authorStr);
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// handleForeignKey(rs, referenceIdSet, "tax_document");
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// }
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// } catch (SQLException e) {
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// e.printStackTrace();
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// }
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//
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// //Authors
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// Set<UUID> uuidSet = new HashSet<>();
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// for (String authorStr : authorKombSet){
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// UUID uuid = state.getAuthorUuid(authorStr);
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// uuidSet.add(uuid);
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// }
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// List<TeamOrPersonBase<?>> authors = (List)getAgentService().find(uuidSet);
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// Map<UUID, TeamOrPersonBase<?>> authorUuidMap = new HashMap<>();
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// for (TeamOrPersonBase<?> author : authors){
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// authorUuidMap.put(author.getUuid(), author);
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// }
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//
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// for (String authorStr : authorKombSet){
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// UUID uuid = state.getAuthorUuid(authorStr);
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// TeamOrPersonBase<?> author = authorUuidMap.get(uuid);
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// authorMap.put(authorStr, author);
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// }
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// result.put(AUTHOR_NAMESPACE, authorMap);
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//
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// //reference map
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// String nameSpace = REFERENCE_NAMESPACE;
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// Class<?> cdmClass = Reference.class;
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// Set<String> idSet = referenceIdSet;
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// Map<String, Reference<?>> referenceMap = (Map<String, Reference<?>>)getCommonService().getSourcedObjectsByIdInSource(cdmClass, idSet, nameSpace);
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// result.put(nameSpace, referenceMap);
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//
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// //secundum
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// UUID secUuid = state.getConfig().getSecUuid();
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// Reference<?> secRef = getReferenceService().find(secUuid);
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// referenceMap.put(secUuid.toString(), secRef);
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return result;
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}
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@Override
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protected boolean doCheck(RedListGefaesspflanzenImportState state) {
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return false;
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}
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@Override
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protected boolean isIgnore(RedListGefaesspflanzenImportState state) {
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return false;
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}
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}
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