Revision 86536e03
Added by Andreas Müller almost 7 years ago
| app-import/src/main/java/eu/etaxonomy/cdm/io/mexico/MexicoConabioTaxonImport.java | ||
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import eu.etaxonomy.cdm.model.common.ExtensionType; |
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import eu.etaxonomy.cdm.model.common.Language; |
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import eu.etaxonomy.cdm.model.common.TimePeriod; |
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import eu.etaxonomy.cdm.model.name.BotanicalName; |
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import eu.etaxonomy.cdm.model.name.IBotanicalName; |
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import eu.etaxonomy.cdm.model.name.NomenclaturalCode; |
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import eu.etaxonomy.cdm.model.name.NomenclaturalStatus; |
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import eu.etaxonomy.cdm.model.name.NomenclaturalStatusType; |
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import eu.etaxonomy.cdm.model.name.Rank; |
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import eu.etaxonomy.cdm.model.name.TaxonNameBase;
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import eu.etaxonomy.cdm.model.name.TaxonName; |
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import eu.etaxonomy.cdm.model.reference.INomenclaturalReference; |
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import eu.etaxonomy.cdm.model.reference.Reference; |
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import eu.etaxonomy.cdm.model.reference.ReferenceFactory; |
| ... | ... | |
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} |
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//Name |
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BotanicalName speciesName = makeName(line, record, state); |
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IBotanicalName speciesName = makeName(line, record, state);
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//sec |
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String secRefStr = getValueNd(record, "ReferenciaNombre"); |
| ... | ... | |
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* @param state |
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* @return |
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*/ |
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private BotanicalName makeName(String line, HashMap<String, String> record, SimpleExcelTaxonImportState<CONFIG> state) {
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private IBotanicalName makeName(String line, HashMap<String, String> record, SimpleExcelTaxonImportState<CONFIG> state) {
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String authorStr = getValueNd(record, "AutorSinAnio"); |
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String nameStr = getValue(record, "Nombre"); |
| ... | ... | |
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//name + author |
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String fullNameStr = nameStr + (authorStr != null ? " " + authorStr : ""); |
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BotanicalName fullName = (BotanicalName)nameParser.parseFullName(fullNameStr, NomenclaturalCode.ICNAFP, rank);
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IBotanicalName fullName = (IBotanicalName)nameParser.parseFullName(fullNameStr, NomenclaturalCode.ICNAFP, rank);
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if (fullName.isProtectedTitleCache()){
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logger.warn(line + "Name could not be parsed: " + fullNameStr ); |
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}else{
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replaceAuthorNamesAndNomRef(state, fullName); |
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} |
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BotanicalName existingName = getExistingName(state, fullName); |
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IBotanicalName existingName = getExistingName(state, fullName);
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|
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//reference |
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String refNameStr = getRefNameStr(nomRefStr, refType, fullNameStr); |
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BotanicalName referencedName = (BotanicalName)nameParser.parseReferencedName(refNameStr, NomenclaturalCode.ICNAFP, rank);
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IBotanicalName referencedName = (IBotanicalName)nameParser.parseReferencedName(refNameStr, NomenclaturalCode.ICNAFP, rank);
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if (referencedName.isProtectedFullTitleCache() || referencedName.isProtectedTitleCache()){
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logger.warn(line + "Referenced name could not be parsed: " + refNameStr ); |
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}else{
|
| ... | ... | |
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adaptRefTypeForGeneric(referencedName, refType); |
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//compare nom. ref. with Borhidi |
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BotanicalName result= referencedName; |
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IBotanicalName result= referencedName;
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Boolean equal = null; |
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if (existingName != null){
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String existingRefTitle = existingName.getFullTitleCache(); |
| ... | ... | |
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* @param equal |
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* @param referencedName |
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*/ |
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private void addNomRefExtension(SimpleExcelTaxonImportState<CONFIG> state, BotanicalName name, Boolean equal) {
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private void addNomRefExtension(SimpleExcelTaxonImportState<CONFIG> state, IBotanicalName name, Boolean equal) {
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String equalStr = equal == null ? "" : equal == true ? "EQUAL\n" : "NOT EQUAL\n"; |
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name.setFullTitleCache(null, false); |
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String newExtensionStr = name.getFullTitleCache() + " - CONABIO"; |
| ... | ... | |
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String label = "Nomenclatural reference in Sources"; |
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String abbrev = "Nom. ref. src."; |
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ExtensionType extensionType = getExtensionType(state, uuidNomRefExtension, label, label, abbrev); |
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Extension.NewInstance(name, newExtensionStr, extensionType); |
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Extension.NewInstance((TaxonName)name, newExtensionStr, extensionType);
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} |
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boolean nameMapIsInitialized = false; |
| ... | ... | |
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* @param fullName |
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* @return |
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*/ |
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private BotanicalName getExistingName(SimpleExcelTaxonImportState<CONFIG> state, BotanicalName fullName) {
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private IBotanicalName getExistingName(SimpleExcelTaxonImportState<CONFIG> state, IBotanicalName fullName) {
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initExistinNames(state); |
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return (BotanicalName)state.getName(fullName.getTitleCache()); |
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return (IBotanicalName)state.getName(fullName.getTitleCache());
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} |
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/** |
| ... | ... | |
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private void initExistinNames(SimpleExcelTaxonImportState<CONFIG> state) {
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if (!nameMapIsInitialized){
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List<String> propertyPaths = Arrays.asList("");
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List<TaxonNameBase> existingNames = this.getNameService().list(null, null, null, null, propertyPaths);
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for (TaxonNameBase tnb : existingNames){
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List<TaxonName> existingNames = this.getNameService().list(null, null, null, null, propertyPaths); |
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for (TaxonName tnb : existingNames){
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state.putName(tnb.getTitleCache(), tnb); |
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} |
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nameMapIsInitialized = true; |
| ... | ... | |
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* @param line |
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* @param name |
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*/ |
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private void makeConceptRelation(String line, TaxonNameBase<?,?> name) {
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private void makeConceptRelation(String line, TaxonName<?,?> name) {
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if (name.getTaxonBases().size()==2){
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Iterator<TaxonBase> it = name.getTaxonBases().iterator(); |
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Taxon taxon1 = getAccepted(it.next()); |
Also available in: Unified diff
fix #6368 rename table and class TaxonNameBase in app-import