Revision 86536e03
Added by Andreas Müller almost 7 years ago
| app-import/src/main/java/eu/etaxonomy/cdm/io/bogota/BogotaChecklistTaxonImport.java | ||
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import eu.etaxonomy.cdm.io.mexico.SimpleExcelTaxonImportState; |
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import eu.etaxonomy.cdm.model.common.IdentifiableSource; |
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import eu.etaxonomy.cdm.model.common.Language; |
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import eu.etaxonomy.cdm.model.name.BotanicalName; |
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import eu.etaxonomy.cdm.model.name.IBotanicalName;
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import eu.etaxonomy.cdm.model.name.Rank; |
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import eu.etaxonomy.cdm.model.name.TaxonNameFactory; |
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import eu.etaxonomy.cdm.model.reference.Reference; |
| ... | ... | |
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}else{
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nameStr = nameStr.replace(auctStr, "").trim(); |
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} |
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BotanicalName name = (BotanicalName)parser.parseFullName(nameStr, state.getConfig().getNomenclaturalCode(), rank);
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IBotanicalName name = (IBotanicalName)parser.parseFullName(nameStr, state.getConfig().getNomenclaturalCode(), rank);
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name.addImportSource(noStr, getNamespace(), getSourceCitation(state), null); |
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name = deduplicationHelper.getExistingName(state, name); |
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if (name.isProtectedTitleCache()){
|
| ... | ... | |
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private void handleSingleSynonym(SimpleExcelTaxonImportState<CONFIG> state, String nameStr, |
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String line, Taxon taxon, String noStr) {
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Rank rank = Rank.SPECIES(); |
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BotanicalName name = (BotanicalName)parser.parseFullName(nameStr, state.getConfig().getNomenclaturalCode(), rank);
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IBotanicalName name = (IBotanicalName)parser.parseFullName(nameStr, state.getConfig().getNomenclaturalCode(), rank);
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name.addImportSource(noStr, getNamespace(), getSourceCitation(state), null); |
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name = deduplicationHelper.getExistingName(state, name); |
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if (name.isProtectedTitleCache()){
|
| ... | ... | |
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split = split.replace(" None", "").trim();
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} |
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Rank rank = Rank.SUBSPECIES(); |
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BotanicalName name = (BotanicalName)parser.parseFullName(split.trim(), state.getConfig().getNomenclaturalCode(), rank);
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IBotanicalName name = (IBotanicalName)parser.parseFullName(split.trim(), state.getConfig().getNomenclaturalCode(), rank);
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name.addImportSource(noStr, getNamespace(), getSourceCitation(state), null); |
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name = deduplicationHelper.getExistingName(state, name); |
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if (name.isProtectedTitleCache()){
|
| ... | ... | |
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nameStr = CdmUtils.concat(" ", nameStr, speciesAuthorStr);
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Rank rank = Rank.SPECIES(); |
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BotanicalName name = (BotanicalName)parser.parseFullName(nameStr, state.getConfig().getNomenclaturalCode(), rank);
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IBotanicalName name = (IBotanicalName)parser.parseFullName(nameStr, state.getConfig().getNomenclaturalCode(), rank);
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name.addImportSource(noStr, getNamespace(), getSourceCitation(state), null); |
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name = deduplicationHelper.getExistingName(state, name); |
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if (name.isProtectedTitleCache()){
|
| ... | ... | |
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if (family != null){
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familyNode = family.getTaxonNodes().iterator().next(); |
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}else{
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BotanicalName name = makeFamilyName(state, familyStr); |
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IBotanicalName name = makeFamilyName(state, familyStr);
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Reference sec = getSecReference(state); |
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family = Taxon.NewInstance(name, sec); |
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|
| ... | ... | |
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classification.setUuid(state.getConfig().getClassificationUuid()); |
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classification.getRootNode().setUuid(rootUuid); |
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BotanicalName plantaeName = TaxonNameFactory.NewBotanicalInstance(Rank.KINGDOM()); |
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IBotanicalName plantaeName = TaxonNameFactory.NewBotanicalInstance(Rank.KINGDOM());
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plantaeName.setGenusOrUninomial("Plantae");
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Taxon plantae = Taxon.NewInstance(plantaeName, sec); |
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TaxonNode plantaeNode = classification.addChildTaxon(plantae, null, null); |
| ... | ... | |
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} |
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protected BotanicalName makeFamilyName(SimpleExcelTaxonImportState<CONFIG> state, String famStr) {
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BotanicalName name = TaxonNameFactory.NewBotanicalInstance(Rank.FAMILY()); |
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protected IBotanicalName makeFamilyName(SimpleExcelTaxonImportState<CONFIG> state, String famStr) {
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IBotanicalName name = TaxonNameFactory.NewBotanicalInstance(Rank.FAMILY());
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famStr = decapitalize(famStr); |
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name.setGenusOrUninomial(famStr); |
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name.addSource(makeOriginalSource(state)); |
| ... | ... | |
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*/ |
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private TaxonNode makeGenusNode(SimpleExcelTaxonImportState<CONFIG> state, |
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HashMap<String, String> record, String genusStr) {
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BotanicalName name = TaxonNameFactory.NewBotanicalInstance(Rank.GENUS()); |
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IBotanicalName name = TaxonNameFactory.NewBotanicalInstance(Rank.GENUS());
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name.setGenusOrUninomial(genusStr); |
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Taxon genus = Taxon.NewInstance(name, getSecReference(state)); |
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TaxonNode family = getFamilyTaxon(record, state); |
Also available in: Unified diff
fix #6368 rename table and class TaxonNameBase in app-import