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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.berlinModel.out;
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import java.sql.Connection;
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import java.sql.PreparedStatement;
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import java.sql.SQLException;
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import java.util.List;
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import org.apache.log4j.Logger;
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import org.springframework.stereotype.Component;
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import org.springframework.transaction.TransactionStatus;
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import eu.etaxonomy.cdm.io.berlinModel.BerlinModelTransformer;
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import eu.etaxonomy.cdm.io.common.IImportConfigurator.DO_REFERENCES;
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import eu.etaxonomy.cdm.io.common.Source;
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import eu.etaxonomy.cdm.io.common.mapping.out.CdmDbExportMapping;
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import eu.etaxonomy.cdm.io.common.mapping.out.CreatedAndNotesMapper;
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import eu.etaxonomy.cdm.io.common.mapping.out.DbBooleanMapper;
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import eu.etaxonomy.cdm.io.common.mapping.out.DbObjectMapper;
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import eu.etaxonomy.cdm.io.common.mapping.out.DbStringMapper;
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import eu.etaxonomy.cdm.io.common.mapping.out.DbTimePeriodMapper;
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import eu.etaxonomy.cdm.io.common.mapping.out.IExportTransformer;
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import eu.etaxonomy.cdm.io.common.mapping.out.IdMapper;
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import eu.etaxonomy.cdm.io.common.mapping.out.MethodMapper;
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import eu.etaxonomy.cdm.model.common.CdmBase;
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/*import eu.etaxonomy.cdm.model.reference.Article;
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import eu.etaxonomy.cdm.model.reference.BookSection;*/
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import eu.etaxonomy.cdm.model.reference.IArticle;
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import eu.etaxonomy.cdm.model.reference.IBookSection;
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import eu.etaxonomy.cdm.model.reference.IInProceedings;
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import eu.etaxonomy.cdm.model.reference.IPrintedUnitBase;
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/*import eu.etaxonomy.cdm.model.reference.InProceedings;
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import eu.etaxonomy.cdm.model.reference.PrintedUnitBase;*/
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import eu.etaxonomy.cdm.model.reference.Reference;
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import eu.etaxonomy.cdm.model.reference.ReferenceType;
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//import eu.etaxonomy.cdm.model.reference.Thesis;
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/**
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* @author a.mueller
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* @since 20.03.2008
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*/
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@Component
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public class BerlinModelReferenceExport extends BerlinModelExportBase<Reference> {
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private static final long serialVersionUID = 7866036354323372595L;
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private static final Logger logger = Logger.getLogger(BerlinModelReferenceExport.class);
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private static int modCount = 1000;
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private static final String dbTableName = "Reference";
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private static final String pluralString = "references";
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private static final Class<? extends CdmBase> standardMethodParameter = Reference.class;
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public BerlinModelReferenceExport(){
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super();
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}
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@Override
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protected boolean doCheck(BerlinModelExportState state){
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boolean result = true;
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logger.warn("Checking for References not yet implemented");
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//result &= checkArticlesWithoutJournal(bmiConfig);
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//result &= checkPartOfJournal(bmiConfig);
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return result;
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}
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private CdmDbExportMapping<BerlinModelExportState, BerlinModelExportConfigurator, IExportTransformer> getMapping(){
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String tableName = dbTableName;
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CdmDbExportMapping<BerlinModelExportState, BerlinModelExportConfigurator, IExportTransformer> mapping = new CdmDbExportMapping<BerlinModelExportState, BerlinModelExportConfigurator, IExportTransformer>(tableName);
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mapping.addMapper(IdMapper.NewInstance("RefId"));
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mapping.addMapper(MethodMapper.NewInstance("RefCategoryFk", this));
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mapping.addMapper(MethodMapper.NewInstance("RefCache", this));
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mapping.addMapper(MethodMapper.NewInstance("NomRefCache", this));
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mapping.addMapper(DbBooleanMapper.NewFalseInstance("isProtectedTitleCache","PreliminaryFlag"));
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mapping.addMapper(DbObjectMapper.NewInstance("authorship", "NomAuthorTeamFk"));
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mapping.addMapper(MethodMapper.NewInstance("RefAuthorString", this));
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mapping.addMapper(DbStringMapper.NewInstance("title", "Title"));
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// mapping.addMapper(MethodMapper.NewInstance("Title", this));
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// mapping.addMapper(DbStringMapper.NewInstance("title", "NomTitleAbbrev"));
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mapping.addMapper(MethodMapper.NewInstance("NomTitleAbbrev", this));
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mapping.addMapper(DbStringMapper.NewFacultativeInstance("edition", "Edition"));
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mapping.addMapper(DbStringMapper.NewFacultativeInstance("volume", "Volume"));
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mapping.addMapper(DbStringMapper.NewFacultativeInstance("series", "Series"));
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mapping.addMapper(DbStringMapper.NewFacultativeInstance("pages", "PageString"));
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mapping.addMapper(DbStringMapper.NewFacultativeInstance("isbn", "ISBN"));
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mapping.addMapper(DbStringMapper.NewFacultativeInstance("issn", "ISSN"));
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mapping.addMapper(DbStringMapper.NewFacultativeInstance("publisher", "Publisher"));
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mapping.addMapper(DbStringMapper.NewFacultativeInstance("placePublished", "PublicationTown"));
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mapping.addMapper(DbTimePeriodMapper.NewInstance("datePublished", "RefYear"));
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mapping.addMapper(MethodMapper.NewInstance("ThesisFlag", this));
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mapping.addMapper(CreatedAndNotesMapper.NewInstance());
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// ,[Series] ??
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// ,[URL]
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// ,[ExportDate]
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// ,[InformalRefCategory]
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// ,[IsPaper]
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// ,[RefSourceFk]
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// ,[IdInSource]
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return mapping;
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}
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@Override
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protected void doInvoke(BerlinModelExportState state){
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try{
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logger.info("start make "+pluralString+" ...");
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boolean success = true ;
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doDelete(state);
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TransactionStatus txStatus = startTransaction(true);
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List<Reference> list = getReferenceService().list(null,100000000, 0,null,null);
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CdmDbExportMapping<BerlinModelExportState, BerlinModelExportConfigurator, IExportTransformer> mapping = getMapping();
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mapping.initialize(state);
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int count = 0;
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for (Reference ref : list){
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doCount(count++, modCount, pluralString);
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success &= mapping.invoke(ref);
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}
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//Prepare InRefStatement
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logger.info("start make inRefences ...");
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String inRefSql = "UPDATE Reference SET InRefFk = ? WHERE RefId = ?";
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Connection con = state.getConfig().getDestination().getConnection();
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PreparedStatement stmt = con.prepareStatement(inRefSql);
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count = 0;
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for (Reference ref : list){
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doCount(count++, modCount, "inReferences");
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success &= invokeInRef(ref, state, stmt);
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}
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commitTransaction(txStatus);
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logger.info("end make "+pluralString+" ..." + getSuccessString(success));
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if (!success){
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String message = "An undefined error occurred during Reference export";
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state.getResult().addError(message);
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}
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return;
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}catch(SQLException e){
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e.printStackTrace();
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logger.error(e.getMessage());
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state.getResult().addException(e);
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return;
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}
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}
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protected boolean invokeInRef(Reference ref, BerlinModelExportState state, PreparedStatement stmt) {
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if (ref == null){
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return true;
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}else{
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Reference inRef = getInRef(ref);
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if (inRef == null){
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return true;
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}else{
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Integer inRefId = state.getDbId(inRef);
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Integer refId = state.getDbId(ref);
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try {
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stmt.setInt(1, inRefId);
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stmt.setInt(2, refId);
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stmt.executeUpdate();
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return true;
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} catch (SQLException e) {
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logger.error("SQLException during inRef invoke for reference " + ref.getTitleCache() + ": " + e.getMessage());
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e.printStackTrace();
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return false;
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}
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}
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}
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}
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private Reference getInRef(Reference ref){
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Reference inRef;
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if (ref.getType().equals(ReferenceType.Article)){
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return (Reference)((IArticle)ref).getInJournal();
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}else if (ref.getType().equals(ReferenceType.BookSection)){
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return (Reference)((IBookSection)ref).getInBook();
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}else if (ref.getType().equals(ReferenceType.InProceedings)){
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return (Reference) ((IInProceedings)ref).getInProceedings();
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}else if (ref.getType().isPrintedUnit()){
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return (Reference)((IPrintedUnitBase)ref).getInSeries();
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}else{
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return null;
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}
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}
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protected boolean doDelete(BerlinModelExportState state){
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BerlinModelExportConfigurator bmeConfig = state.getConfig();
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String sql;
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Source destination = bmeConfig.getDestination();
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//RelReference
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sql = "DELETE FROM RelReference";
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destination.setQuery(sql);
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destination.update(sql);
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//References
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sql = "DELETE FROM Reference";
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destination.setQuery(sql);
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destination.update(sql);
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return true;
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.common.CdmIoBase#isIgnore(eu.etaxonomy.cdm.io.common.IImportConfigurator)
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*/
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@Override
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protected boolean isIgnore(BerlinModelExportState state){
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if (state.getConfig().getDoReferences().equals(DO_REFERENCES.ALL)){
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return false;
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}else{
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return true;
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}
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}
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//called by MethodMapper
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@SuppressWarnings("unused")
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private static Integer getRefCategoryFk(Reference ref){
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return BerlinModelTransformer.ref2refCategoryId(ref);
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}
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//called by MethodMapper
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@SuppressWarnings("unused")
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private static String getRefCache(Reference ref){
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if (ref.isProtectedTitleCache()){
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return ref.getTitleCache();
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}else{
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return null;
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}
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}
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//called by MethodMapper
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@SuppressWarnings("unused")
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private static String getNomRefCache(Reference ref){
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if (ref.isProtectedTitleCache()){
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return ref.getTitleCache();
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}else{
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return null;
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}
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}
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// //called by MethodMapper
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// @SuppressWarnings("unused")
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// private static String getTtile(StrictReferenceBase<?> ref){
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//// if (ref.isProtectedTitleCache()){
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//// return ref.getTitleCache();
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//// }else{
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//// return null;
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//// }
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// }
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//called by MethodMapper
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@SuppressWarnings("unused")
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private static String getNomTitleAbbrev(Reference ref){
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if (/*ref.isNomenclaturallyRelevant() &&*/ ref.getTitle() != null && ref.getTitle().length() <=80){
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return ref.getTitle();
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}else{
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return null;
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}
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}
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//called by MethodMapper
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@SuppressWarnings("unused")
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private static String getRefAuthorString(Reference ref){
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if (ref == null){
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return null;
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}else{
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return (ref.getAuthorship() == null)? null: ref.getAuthorship().getTitleCache();
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}
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}
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//called by MethodMapper
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@SuppressWarnings("unused")
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private static Boolean getPreliminaryFlag(Reference ref){
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if (ref.isProtectedTitleCache()){
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return true;
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}else{
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return false;
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}
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}
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//called by MethodMapper
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@SuppressWarnings("unused")
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private static Boolean getThesisFlag(Reference ref){
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if (ref.getType().equals(ReferenceType.Thesis)){
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return true;
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}else{
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return false;
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}
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.berlinModel.out.BerlinModelExportBase#getStandardMethodParameter()
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*/
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@Override
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public Class<? extends CdmBase> getStandardMethodParameter() {
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return standardMethodParameter;
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}
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}
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