Revision 84e9ddba
Added by Andreas Müller over 9 years ago
| app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/EuroMedActivator.java | ||
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import java.util.UUID; |
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import org.apache.log4j.Logger; |
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import org.springframework.transaction.TransactionStatus; |
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import eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration; |
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import eu.etaxonomy.cdm.app.common.CdmDestinations; |
| ... | ... | |
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static final Source berlinModelSource = BerlinModelSources.euroMed_PESI3(); |
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// static final ICdmDataSource cdmDestination = CdmDestinations.cdm_pesi_euroMed(); |
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static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_euromed(); |
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static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_euromed3();
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// static final ICdmDataSource cdmDestination = CdmDestinations.localH2(); |
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static final boolean includePesiExport = false; |
| ... | ... | |
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// **************** ALL ********************* |
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// static final boolean doUser = true; |
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// //authors |
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// static final boolean doAuthors = true; |
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// //references |
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// static final DO_REFERENCES doReferences = DO_REFERENCES.ALL; |
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// //names |
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// static final boolean doTaxonNames = true; |
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// static final boolean doRelNames = true; |
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// static final boolean doNameStatus = true; |
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// static final boolean doTypes = false; //serious types do not exist in E+M |
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// static final boolean doNameFacts = true; |
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// |
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// //taxa |
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// static final boolean doTaxa = true; |
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// static final boolean doRelTaxa = false; |
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// static final boolean doFacts = true; |
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// static final boolean doOccurences = true; |
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// static final boolean doCommonNames = true; |
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// |
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// //etc. |
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// static final boolean doMarker = true; |
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boolean invers = true; |
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// **************** SELECTED ********************* |
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static final boolean doUser = false; |
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//authors |
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static final boolean doAuthors = false; |
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static final boolean doUser = true; |
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// //authors |
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static final boolean doAuthors = true; |
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//references |
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static final DO_REFERENCES doReferences = DO_REFERENCES.NONE;
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static final DO_REFERENCES doReferences = DO_REFERENCES.ALL;
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//names |
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static final boolean doTaxonNames = false; |
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static final boolean doRelNames = false; |
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static final boolean doNameStatus = false; |
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static final boolean doTypes = false; |
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static final boolean doNameFacts = false; |
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//taxa |
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static final boolean doTaxa = false; |
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static final boolean doRelTaxa = true; |
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static final boolean doFacts = false; |
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static final boolean doOccurences = false; |
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static final boolean doCommonNames = false; |
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static final boolean doTaxonNames = true; |
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static final boolean doRelNames = true; |
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static final boolean doNameStatus = true; |
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static final boolean doTypes = false; //serious types do not exist in E+M |
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static final boolean doNameFacts = true; |
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//taxa |
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static final boolean doTaxa = true; |
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static final boolean doRelTaxa = false; |
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static final boolean doFacts = true; |
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static final boolean doOccurences = true; |
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static final boolean doCommonNames = true; |
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//etc. |
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static final boolean doMarker = false;
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static final boolean doMarker = true;
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public void importEm2CDM (Source source, ICdmDataSource destination, DbSchemaValidation hbm2dll){
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System.out.println("Start import from BerlinModel("+ berlinModelSource.getDatabase() + ") to " + cdmDestination.getDatabase() + " ...");
|
| ... | ... | |
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config.setClassificationUuid(classificationUuid); |
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config.setSourceSecId(sourceSecId); |
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config.setNomenclaturalCode(nomenclaturalCode); |
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config.setIgnoreNull(ignoreNull); |
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config.setDoAuthors(doAuthors); |
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config.setDoReferences(doReferences); |
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config.setDoTaxonNames(doTaxonNames); |
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config.setDoRelNames(doRelNames); |
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config.setDoNameStatus(doNameStatus); |
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config.setDoTypes(doTypes); |
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config.setDoNameFacts(doNameFacts); |
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config.setUseClassification(useClassification); |
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config.setSourceRefUuid(BerlinModelTransformer.uuidSourceRefEuroMed); |
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config.setDoTaxa(doTaxa); |
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config.setDoRelTaxa(doRelTaxa); |
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config.setDoFacts(doFacts); |
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config.setDoOccurrence(doOccurences); |
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config.setDoCommonNames(doCommonNames); |
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config.setDoAuthors(doAuthors ^ invers); |
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config.setDoReferences(invers ? doReferences.invers() : doReferences); |
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config.setDoTaxonNames(doTaxonNames ^ invers); |
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config.setDoRelNames(doRelNames ^ invers); |
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config.setDoNameStatus(doNameStatus ^ invers); |
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config.setDoTypes(doTypes); //always false |
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config.setDoNameFacts(doNameFacts ^ invers); |
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config.setDoTaxa(doTaxa ^ invers); |
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config.setDoRelTaxa(doRelTaxa ^ invers); |
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config.setDoFacts(doFacts ^ invers); |
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config.setDoOccurrence(doOccurences ^ invers); |
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config.setDoCommonNames(doCommonNames ^ invers); |
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config.setDoMarker(doMarker); |
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config.setDoUser(doUser); |
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config.setDoMarker(doMarker ^ invers); |
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config.setDoUser(doUser ^ invers); |
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config.setUseClassification(useClassification); |
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config.setSourceRefUuid(BerlinModelTransformer.uuidSourceRefEuroMed); |
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config.setEditor(editor); |
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config.setDbSchemaValidation(hbm2dll); |
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|
| ... | ... | |
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CdmDefaultImport<BerlinModelImportConfigurator> bmImport = new CdmDefaultImport<BerlinModelImportConfigurator>(); |
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bmImport.invoke(config); |
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if (doTaxonNames && (config.getCheck().equals(CHECK.CHECK_AND_IMPORT) || config.getCheck().equals(CHECK.IMPORT_WITHOUT_CHECK) ) ){
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if (config.isDoTaxonNames() && (config.getCheck().equals(CHECK.CHECK_AND_IMPORT) || config.getCheck().equals(CHECK.IMPORT_WITHOUT_CHECK) ) ){
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ICdmApplicationConfiguration app = bmImport.getCdmAppController(); |
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Rank sectBot = (Rank)app.getTermService().find(Rank.SECTION_BOTANY().getUuid()); |
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Representation repr = sectBot.getRepresentation(Language.ENGLISH()); |
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repr.setAbbreviatedLabel(repr.getAbbreviatedLabel().replace("(bot.)", "").trim());
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repr.setLabel(repr.getLabel().replace("(Botany)", "").trim());
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sectBot.setTitleCache(null, false); //to definetely update the titleCache also |
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app.getTermService().saveOrUpdate(sectBot); |
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Rank subSectBot = (Rank)app.getTermService().find(Rank.SECTION_BOTANY().getUuid()); |
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repr = subSectBot.getRepresentation(Language.ENGLISH()); |
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repr.setAbbreviatedLabel(repr.getAbbreviatedLabel().replace("(bot.)", "").trim());
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repr.setLabel(repr.getLabel().replace("(Botany)", "").trim());
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subSectBot.setTitleCache(null, false); //to definetely update the titleCache also |
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app.getTermService().saveOrUpdate(subSectBot); |
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TransactionStatus tx = app.startTransaction(); |
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try {
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Rank sectBot = (Rank)app.getTermService().find(Rank.SECTION_BOTANY().getUuid()); |
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Representation repr = sectBot.getRepresentation(Language.ENGLISH()); |
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repr.setAbbreviatedLabel(repr.getAbbreviatedLabel().replace("(bot.)", "").trim());
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repr.setLabel(repr.getLabel().replace("(Botany)", "").trim());
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sectBot.setTitleCache(null, false); //to definetely update the titleCache also |
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app.getTermService().saveOrUpdate(sectBot); |
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Rank subSectBot = (Rank)app.getTermService().find(Rank.SECTION_BOTANY().getUuid()); |
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repr = subSectBot.getRepresentation(Language.ENGLISH()); |
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repr.setAbbreviatedLabel(repr.getAbbreviatedLabel().replace("(bot.)", "").trim());
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repr.setLabel(repr.getLabel().replace("(Botany)", "").trim());
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subSectBot.setTitleCache(null, false); //to definetely update the titleCache also |
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app.getTermService().saveOrUpdate(subSectBot); |
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app.commitTransaction(tx); |
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} catch (Exception e) {
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e.printStackTrace(); |
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} |
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} |
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if (doFacts && (config.getCheck().equals(CHECK.CHECK_AND_IMPORT) || config.getCheck().equals(CHECK.IMPORT_WITHOUT_CHECK) ) ){
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if (config.isDoFacts() && (config.getCheck().equals(CHECK.CHECK_AND_IMPORT) || config.getCheck().equals(CHECK.IMPORT_WITHOUT_CHECK) ) ){
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ICdmApplicationConfiguration app = bmImport.getCdmAppController(); |
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TransactionStatus tx = app.startTransaction(); |
|
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|
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//make feature tree |
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FeatureTree tree = TreeCreator.flatTree(featureTreeUuid, config.getFeatureMap(), featureKeyList); |
| 258 | 241 |
FeatureNode imageNode = FeatureNode.NewInstance(Feature.IMAGE()); |
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tree.getRoot().addChild(imageNode); |
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FeatureNode distributionNode = FeatureNode.NewInstance(Feature.DISTRIBUTION()); |
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tree.getRoot().addChild(distributionNode, 2);
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tree.getRoot().addChild(distributionNode, 1);
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FeatureNode commonNameNode = FeatureNode.NewInstance(Feature.COMMON_NAME()); |
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tree.getRoot().addChild(commonNameNode, 3);
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tree.getRoot().addChild(commonNameNode, 2);
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app.getFeatureTreeService().saveOrUpdate(tree); |
| 265 | 248 |
|
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//Change common name label |
| ... | ... | |
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commonNameFeature.setLabel("Common Names", Language.ENGLISH());
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commonNameFeature.setTitleCache(null, false); //to definetely update the titleCache also |
| 270 | 253 |
app.getTermService().saveOrUpdate(commonNameFeature); |
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app.commitTransaction(tx); |
|
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} |
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System.out.println("End import from BerlinModel ("+ source.getDatabase() + ")...");
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