Revision 8422c0cd
Added by Andreas Müller almost 8 years ago
| cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/erms/ErmsDrImport.java | ||
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/** |
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* Copyright (C) 2007 EDIT |
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* European Distributed Institute of Taxonomy
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* European Distributed Institute of Taxonomy |
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* http://www.e-taxonomy.eu |
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*
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* |
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* The contents of this file are subject to the Mozilla Public License Version 1.1 |
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* See LICENSE.TXT at the top of this package for the full license terms. |
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*/ |
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public class ErmsDrImport extends ErmsImportBase<Distribution> {
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@SuppressWarnings("unused")
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private static final Logger logger = Logger.getLogger(ErmsDrImport.class); |
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private DbImportMapping<ErmsImportState, ErmsImportConfigurator> mapping; |
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private static final String pluralString = "distributions"; |
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private static final String dbTableName = "dr"; |
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private static final Class<?> cdmTargetClass = Distribution.class; |
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@Override |
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protected String getRecordQuery(ErmsImportConfigurator config) {
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String strRecordQuery =
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" SELECT dr.*, tu.tu_acctaxon, tu.id " +
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String strRecordQuery = |
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" SELECT dr.*, tu.tu_acctaxon, tu.id " + |
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" FROM dr INNER JOIN tu ON dr.tu_id = tu.id " + |
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" WHERE ( dr.id IN (" + ID_LIST_TOKEN + ") )";
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return strRecordQuery; |
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protected DbImportMapping<ErmsImportState, ErmsImportConfigurator> getMapping() {
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if (mapping == null){
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mapping = new DbImportMapping<ErmsImportState, ErmsImportConfigurator>(); |
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PresenceAbsenceTerm status = PresenceAbsenceTerm.PRESENT(); |
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DbImportDistributionCreationMapper<?> distributionMapper = DbImportDistributionCreationMapper.NewFixedStatusInstance("id", DR_NAMESPACE, "tu_acctaxon", ErmsTaxonImport.TAXON_NAMESPACE, status);
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distributionMapper.setSource("source_id", REFERENCE_NAMESPACE, null);
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mapping.addMapper(distributionMapper); |
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mapping.addMapper(DbImportObjectMapper.NewInstance("gu_id", "area", ErmsAreaImport.AREA_NAMESPACE));
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mapping.addMapper(DbImportAnnotationMapper.NewInstance("note", AnnotationType.EDITORIAL()));
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mapping.addMapper(DbIgnoreMapper.NewInstance("unacceptsource_id"));
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mapping.addMapper(DbIgnoreMapper.NewInstance("unacceptreason"));
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mapping.addMapper(DbIgnoreMapper.NewInstance("valid_flag"));
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mapping.addMapper(DbIgnoreMapper.NewInstance("min_abundance"));
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mapping.addMapper(DbIgnoreMapper.NewInstance("max_abundance"));
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} |
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return mapping; |
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} |
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@Override |
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public Map<Object, Map<String, ? extends CdmBase>> getRelatedObjectsForPartition(ResultSet rs, ErmsImportState state) {
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Class<?> cdmClass; |
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Set<String> idSet; |
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Map<Object, Map<String, ? extends CdmBase>> result = new HashMap<Object, Map<String, ? extends CdmBase>>(); |
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try{
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Set<String> taxonIdSet = new HashSet<String>(); |
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Set<String> areaIdSet = new HashSet<String>(); |
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handleForeignKey(rs, areaIdSet, "gu_id"); |
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handleForeignKey(rs, sourceIdSet, "source_id"); |
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} |
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//taxon map |
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nameSpace = ErmsTaxonImport.TAXON_NAMESPACE; |
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cdmClass = TaxonBase.class; |
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idSet = taxonIdSet; |
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Map<String, TaxonBase<?>> taxonMap = (Map<String, TaxonBase<?>>)getCommonService().getSourcedObjectsByIdInSource(cdmClass, idSet, nameSpace); |
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result.put(nameSpace, taxonMap); |
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//areas |
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nameSpace = ErmsAreaImport.AREA_NAMESPACE; |
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cdmClass = NamedArea.class; |
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idSet = areaIdSet; |
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Map<String, NamedArea> areaMap = (Map<String, NamedArea>)getCommonService().getSourcedObjectsByIdInSource(cdmClass, idSet, nameSpace); |
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result.put(nameSpace, areaMap); |
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//reference map |
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nameSpace = ErmsReferenceImport.REFERENCE_NAMESPACE; |
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cdmClass = Reference.class; |
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idSet = sourceIdSet; |
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Map<String, Reference<?>> referenceMap = (Map<String, Reference<?>>)getCommonService().getSourcedObjectsByIdInSource(cdmClass, idSet, nameSpace);
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Map<String, Reference> referenceMap = (Map<String, Reference>)getCommonService().getSourcedObjectsByIdInSource(cdmClass, idSet, nameSpace);
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result.put(nameSpace, referenceMap); |
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} catch (SQLException e) {
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throw new RuntimeException(e); |
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} |
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return result; |
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} |
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/** |
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* @param distribution |
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* @param source_id |
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* @param state
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* @param state |
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*/ |
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private void addSource(Distribution distribution, Integer source_id, ErmsImportState state) {
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Reference<?> ref = (Reference)state.getRelatedObject(ErmsReferenceImport.REFERENCE_NAMESPACE, String.valueOf(source_id));
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Reference ref = (Reference)state.getRelatedObject(ErmsReferenceImport.REFERENCE_NAMESPACE, String.valueOf(source_id)); |
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distribution.addSource(OriginalSourceType.PrimaryTaxonomicSource, null, null, ref, null); |
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} |
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IOValidator<ErmsImportState> validator = new ErmsDrImportValidator(); |
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return validator.validate(state); |
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} |
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/* (non-Javadoc) |
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* @see eu.etaxonomy.cdm.io.common.CdmIoBase#isIgnore(eu.etaxonomy.cdm.io.common.IImportConfigurator) |
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*/ |
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protected boolean isIgnore(ErmsImportState state){
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@Override |
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protected boolean isIgnore(ErmsImportState state){
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return ! state.getConfig().isDoOccurrence(); |
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} |
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Also available in: Unified diff
Remove generics from Reference in cdmlib-app #5830