Revision 83146769
Added by Andreas Müller over 4 years ago
| cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/faunaEuropaea/FaunaEuropaeaAdditionalTaxonDataImport.java | ||
|---|---|---|
| 112 | 112 |
String genusOrUninomial = targetNonViralName.getGenusOrUninomial(); |
| 113 | 113 |
String specificEpithet = targetNonViralName.getSpecificEpithet(); |
| 114 | 114 |
List<TaxonBase> foundTaxa = getTaxonService().listTaxaByName(Taxon.class, genusOrUninomial, "*", specificEpithet, |
| 115 |
"*", "*", null, pageSize, 1); |
|
| 115 |
"*", "*", null, pageSize, 1, null);
|
|
| 116 | 116 |
if (foundTaxa.size() == 1) {
|
| 117 | 117 |
// one matching Taxon found |
| 118 | 118 |
TaxonBase<?> taxon = foundTaxa.iterator().next(); |
| cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/faunaEuropaea/FaunaEuropaeaRelTaxonIncludeImport.java | ||
|---|---|---|
| 1151 | 1151 |
Set<TaxonBase> synonymList = new HashSet<TaxonBase>(); |
| 1152 | 1152 |
|
| 1153 | 1153 |
|
| 1154 |
while ((taxonList = getTaxonService().listTaxaByName(Taxon.class, "*", "*", "*", "*", "*", Rank.SPECIES(), pageSize, pageNumber)).size() > 0) {
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|
| 1154 |
while ((taxonList = getTaxonService().listTaxaByName(Taxon.class, "*", "*", "*", "*", "*", Rank.SPECIES(), pageSize, pageNumber, null)).size() > 0) {
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|
| 1155 | 1155 |
HashMap<Integer, TaxonName> inferredSynonymsDataToBeSaved = new HashMap<>(); |
| 1156 | 1156 |
|
| 1157 | 1157 |
logger.info("Fetched " + taxonList.size() + " " + parentPluralString + ". Importing...");
|
| ... | ... | |
| 1175 | 1175 |
pageNumber++; |
| 1176 | 1176 |
} |
| 1177 | 1177 |
taxonList = null; |
| 1178 |
while ((taxonList = getTaxonService().listTaxaByName(Taxon.class, "*", "*", "*", "*", "*", Rank.SUBSPECIES(), pageSize, pageNumber)).size() > 0) {
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|
| 1178 |
while ((taxonList = getTaxonService().listTaxaByName(Taxon.class, "*", "*", "*", "*", "*", Rank.SUBSPECIES(), pageSize, pageNumber, null)).size() > 0) {
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|
| 1179 | 1179 |
HashMap<Integer, TaxonName> inferredSynonymsDataToBeSaved = new HashMap<>(); |
| 1180 | 1180 |
|
| 1181 | 1181 |
logger.info("Fetched " + taxonList.size() + " " + parentPluralString + ". Exporting...");
|
| cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/indexFungorum/IndexFungorumGeneraImport.java | ||
|---|---|---|
| 171 | 171 |
// idSet = taxonNameSet; |
| 172 | 172 |
Map<String, TaxonBase<?>> taxonMap = new HashMap<>(); |
| 173 | 173 |
@SuppressWarnings("rawtypes")
|
| 174 |
List<TaxonBase> list = getTaxonService().listTaxaByName(Taxon.class, "*", null, null, null, "*", null, 1000000, null); |
|
| 174 |
List<TaxonBase> list = getTaxonService().listTaxaByName(Taxon.class, "*", null, null, null, "*", null, 1000000, null, null);
|
|
| 175 | 175 |
for (TaxonBase<?> taxon : list){
|
| 176 | 176 |
taxonMap.put(CdmBase.deproxy(taxon.getName()).getGenusOrUninomial(), taxon); |
| 177 | 177 |
} |
| cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/out/PesiTaxonExport.java | ||
|---|---|---|
| 697 | 697 |
} |
| 698 | 698 |
|
| 699 | 699 |
List<TaxonBase> taxonList = null; |
| 700 |
while ((taxonList = getTaxonService().listTaxaByName(Taxon.class, "*", "*", "*", "*", "*", Rank.SPECIES(), pageSize, pageNumber)).size() > 0) {
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|
| 700 |
while ((taxonList = getTaxonService().listTaxaByName(Taxon.class, "*", "*", "*", "*", "*", Rank.SPECIES(), pageSize, pageNumber, null)).size() > 0) {
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|
| 701 | 701 |
|
| 702 | 702 |
Map<Integer, TaxonName> inferredSynonymsDataToBeSaved = new HashMap<>(); |
| 703 | 703 |
|
| ... | ... | |
| 730 | 730 |
pageNumber++; |
| 731 | 731 |
} |
| 732 | 732 |
taxonList = null; |
| 733 |
while ((taxonList = getTaxonService().listTaxaByName(Taxon.class, "*", "*", "*", "*", "*", Rank.SUBSPECIES(), pageSize, pageNumber)).size() > 0) {
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|
| 733 |
while ((taxonList = getTaxonService().listTaxaByName(Taxon.class, "*", "*", "*", "*", "*", Rank.SUBSPECIES(), pageSize, pageNumber, null)).size() > 0) {
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| 734 | 734 |
Map<Integer, TaxonName> inferredSynonymsDataToBeSaved = new HashMap<>(); |
| 735 | 735 |
|
| 736 | 736 |
logger.info("Fetched " + taxonList.size() + " " + parentPluralString + ". Exporting...");
|
Also available in: Unified diff
ref #8684 fixing compile errors in cdm-pesi