Revision 81c27837
Added by Lorna Morris over 9 years ago
| app-import/src/main/java/eu/etaxonomy/cdm/app/vibrant/DwcaScratchpadImportActivator.java | ||
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package eu.etaxonomy.cdm.app.vibrant; |
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import java.io.File; |
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import java.net.URI; |
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import java.util.UUID; |
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private static final Logger logger = Logger.getLogger(DwcaScratchpadImportActivator.class); |
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//database validation status (create, update, validate ...) |
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static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;
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static DbSchemaValidation hbm2dll = DbSchemaValidation.UPDATE;//UPDATE;//CREATE;//UPDATE;
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// static final URI source = dwca_emonocots_dioscoreaceae(); |
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// static final URI source = dwca_emonocots_zingiberaceae(); |
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//static final URI source = dwca_emonocots_cypripedioideae(); |
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static final URI source = dwca_emonocots_dioscoreaceae(); |
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static final URI source = null;//dwca_antkey();//dwca_emonocots_dioscoreaceae();
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// static final ICdmDataSource cdmDestination = CdmDestinations.localH2(); |
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//default nom code is ICZN as it allows adding publication year |
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static final NomenclaturalCode defaultNomCode = NomenclaturalCode.ICBN; |
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//classification Name |
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static String classificationName = "Default classification"; |
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//title |
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static final String title = "Scratchpad test import"; |
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config.setGuessNomenclaturalReferences(guessNomRef); |
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config.setHandleAllRefsAsCitation(handleAllRefsAsCitation); |
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config.setUseSourceReferenceAsSec(useSourceReferenceAsSec); |
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config.setSourceReferenceTitle(title); |
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config.setSourceReferenceTitle(classificationName);//title); |
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config.setClassificationName(classificationName); |
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config.setUseSourceReferenceAsSec(true);//Lorna: what shall we use as sec reference for Scratchpads data? |
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CdmDefaultImport myImport = new CdmDefaultImport(); |
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return sourceUrl; |
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} |
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//dwca_antkey_org.zip |
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public static URI dwca_antkey() {
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//URI sourceUrl = URI.create("file:////PESIIMPORT3/vibrant/dwca/dwca_emonocots_dioscoreaceae.zip");//dwca_dioscoreaceae_e_monocot.zip
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URI sourceUrl = URI.create("file:///C:/Users/l.morris/Downloads/amaryllidaceae.zip");//antkey.zip");//alismataceae.zip");//hypoxidaceae.zip");//dwca_antkey.zip");
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return sourceUrl; |
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} |
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//emonocots_zingiberaceae |
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public static URI dwca_emonocots_zingiberaceae() {
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URI sourceUrl = URI.create("file:////PESIIMPORT3/vibrant/dwca/dwca_emonocots_zingiberaceae.zip");
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*/ |
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public static void main(String[] args) {
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DwcaScratchpadImportActivator me = new DwcaScratchpadImportActivator(); |
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me.doImport(source, cdmDestination, classificationUuid, title, hbm2dll); |
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//lorna: TODO get the classification name from the dwca zip file name |
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classificationName = "Scratchpad classification";//"Amaryllidaceae"; |
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// Directory path here |
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String path = "C:/Users/l.morris/Downloads/dwca_scratchpads/nine"; |
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URI sourceUrl; |
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//URI sourceUrl = URI.create("file:////PESIIMPORT3/vibrant/dwca/dwca_emonocots_zingiberaceae.zip");
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String zipFile; |
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File folder = new File(path); |
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File[] listOfFiles = folder.listFiles(); |
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for (int i = 0; i < listOfFiles.length; i++) |
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{
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if (listOfFiles[i].isFile()) |
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{
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zipFile = listOfFiles[i].getName(); |
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if (zipFile.endsWith(".zip"))
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{
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//classificationName = zipFile.split(".zip")[0];
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classificationName = zipFile.split("dwca_")[1];
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classificationName = classificationName.split("_")[0];
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System.out.println(classificationName); |
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//start the Scratchpad name with uppercase. |
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char[] stringArray = classificationName.toCharArray(); |
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stringArray[0] = Character.toUpperCase(stringArray[0]); |
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classificationName = new String(stringArray) + " (Scratchpads)"; |
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System.out.println(classificationName); |
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//System.exit(999); |
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sourceUrl = URI.create("file:///" + path + "/" + zipFile);
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System.out.println(sourceUrl); |
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me.doImport(sourceUrl, cdmDestination, classificationUuid, title, hbm2dll); |
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//System.exit(999); |
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} |
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} |
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} |
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//System.exit(999); |
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//list all files in the directory |
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//get the URI of each |
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//URI sourceUrl = URI.create("file:///C:/Users/l.morris/Downloads/amaryllidaceae.zip");
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//Lorna iterate through the dwca directly getting each dwca.zip and generate a URI for each source |
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//me.doImport(source, cdmDestination, classificationUuid, title, hbm2dll); |
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} |
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} |
Also available in: Unified diff
Now iterates through all dwca.zip files downloaded using Scratchpads service and imports them into the CDM.