Revision 7d882578
Added by Andreas Müller about 7 years ago
| app-import/src/main/java/eu/etaxonomy/cdm/io/redlist/gefaesspflanzen/RedListGefaesspflanzenImportNames.java | ||
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import eu.etaxonomy.cdm.model.common.OrderedTermVocabulary; |
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import eu.etaxonomy.cdm.model.description.CommonTaxonName; |
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import eu.etaxonomy.cdm.model.description.TaxonDescription; |
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import eu.etaxonomy.cdm.model.name.CultivarPlantName; |
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import eu.etaxonomy.cdm.model.name.ICultivarPlantName; |
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import eu.etaxonomy.cdm.model.name.INonViralName; |
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import eu.etaxonomy.cdm.model.name.ITaxonNameBase; |
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import eu.etaxonomy.cdm.model.name.NomenclaturalCode; |
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import eu.etaxonomy.cdm.model.name.NomenclaturalStatus; |
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import eu.etaxonomy.cdm.model.name.NomenclaturalStatusType; |
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import eu.etaxonomy.cdm.model.name.NonViralName; |
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import eu.etaxonomy.cdm.model.name.Rank; |
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import eu.etaxonomy.cdm.model.name.RankClass; |
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import eu.etaxonomy.cdm.model.name.TaxonNameBase; |
| ... | ... | |
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@Override |
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public boolean doPartition(ResultSetPartitioner partitioner, RedListGefaesspflanzenImportState state) {
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ResultSet rs = partitioner.getResultSet(); |
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Set<TaxonNameBase> namesToSave = new HashSet<TaxonNameBase>();
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Set<TaxonBase> taxaToSave = new HashSet<TaxonBase>();
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Set<ITaxonNameBase> namesToSave = new HashSet<>();
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Set<TaxonBase> taxaToSave = new HashSet<>(); |
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try {
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while (rs.next()){
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makeSingleNameAndTaxon(state, rs, namesToSave, taxaToSave); |
| ... | ... | |
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e.printStackTrace(); |
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} |
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getNameService().saveOrUpdate(namesToSave);
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getNameService().saveOrUpdate(TaxonNameBase.castAndDeproxy(namesToSave));
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getTaxonService().saveOrUpdate(taxaToSave); |
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return true; |
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} |
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private void makeSingleNameAndTaxon(RedListGefaesspflanzenImportState state, ResultSet rs, Set<TaxonNameBase> namesToSave, Set<TaxonBase> taxaToSave) |
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private void makeSingleNameAndTaxon(RedListGefaesspflanzenImportState state, ResultSet rs, Set<ITaxonNameBase> namesToSave, Set<TaxonBase> taxaToSave)
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throws SQLException {
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long id = rs.getLong(RedListUtil.NAMNR); |
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String relationE = rs.getString(RedListUtil.E); |
| ... | ... | |
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String relationS = rs.getString(RedListUtil.S); |
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//---NAME--- |
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NonViralName<?> name = importName(state, rs, namesToSave);
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INonViralName name = importName(state, rs, namesToSave);
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//--- AUTHORS --- |
| ... | ... | |
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} |
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} |
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private TaxonBase<?> importTaxon(ResultSet rs, NonViralName<?> name, RedListGefaesspflanzenImportState state) throws SQLException {
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private TaxonBase<?> importTaxon(ResultSet rs, INonViralName name, RedListGefaesspflanzenImportState state) throws SQLException {
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long id = rs.getLong(RedListUtil.NAMNR); |
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String taxNameString = rs.getString(RedListUtil.TAXNAME); |
| ... | ... | |
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return taxonBase; |
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} |
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private void importAuthors(RedListGefaesspflanzenImportState state, ResultSet rs, NonViralName<?> name) throws SQLException {
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private void importAuthors(RedListGefaesspflanzenImportState state, ResultSet rs, INonViralName name) throws SQLException {
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long id = rs.getLong(RedListUtil.NAMNR); |
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String nomZusatzString = rs.getString(RedListUtil.NOM_ZUSATZ); |
| ... | ... | |
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checkNameConsistency(id, nomZusatzString, taxZusatzString, zusatzString, authorString, hybString, name); |
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} |
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private NonViralName<?> importName(RedListGefaesspflanzenImportState state, ResultSet rs, Set<TaxonNameBase> namesToSave) throws SQLException {
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private INonViralName importName(RedListGefaesspflanzenImportState state, ResultSet rs, Set<ITaxonNameBase> namesToSave) throws SQLException {
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long id = rs.getLong(RedListUtil.NAMNR); |
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String taxNameString = rs.getString(RedListUtil.TAXNAME); |
| ... | ... | |
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RedListUtil.logMessage(id, "No name found!", logger); |
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} |
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NonViralName<?> name = null;
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INonViralName name = null;
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Rank rank = makeRank(id, state, rangString, CdmUtils.isNotBlank(ep3String)); |
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//cultivar |
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if(rank!= null && rank.equals(Rank.CULTIVAR())){
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CultivarPlantName cultivar = TaxonNameFactory.NewCultivarInstance(rank); |
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ICultivarPlantName cultivar = TaxonNameFactory.NewCultivarInstance(rank);
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cultivar.setGenusOrUninomial(ep1String); |
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cultivar.setSpecificEpithet(ep2String); |
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cultivar.setCultivarName(ep3String); |
| ... | ... | |
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} |
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|
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private void checkNameConsistency(long id, String nomZusatzString, String taxZusatzString, |
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String zusatzString, String authorString, String hybString, NonViralName<?> name) {
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String zusatzString, String authorString, String hybString, INonViralName name) {
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String authorshipCache = name.getAuthorshipCache(); |
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//FIXME: remove split length check when name parser can parse multiple hybrid parents |
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if(hybString.equals(RedListUtil.HYB_XF) && name.getTitleCache().split(RedListUtil.HYB_SIGN).length==2){
|
| ... | ... | |
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return; |
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} |
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String nameCache = HibernateProxyHelper.deproxy(taxonBase.getName(), NonViralName.class).getNameCache().trim();
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String nameCache = taxonBase.getName().getNameCache().trim();
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taxNameString = taxNameString.trim(); |
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taxNameString = taxNameString.replaceAll(" +", " ");
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Also available in: Unified diff
ref #6362, ref #6365 remove occurrences of NonViralName, BotanicalName and ZoologicalName in cdmlib-app