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/**
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* Copyright (C) 2015 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.edaphobase;
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import java.util.UUID;
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import org.apache.log4j.Logger;
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import eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase;
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import eu.etaxonomy.cdm.io.common.mapping.UndefinedTransformerMethodException;
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import eu.etaxonomy.cdm.model.name.Rank;
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/**
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* @author a.mueller
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* @date 18.12.2015
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*
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*/
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public class EdaphobaseImportTransformer extends InputTransformerBase {
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private static final long serialVersionUID = 1011498282020827250L;
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@SuppressWarnings("unused")
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private static final Logger logger = Logger.getLogger(EdaphobaseImportTransformer.class);
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private static final UUID uuidTaxGrossgruppeMarker = UUID.fromString("71f22f44-5131-4d54-8362-1c77ac5c567a");
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private static final UUID uuidEdaphoRankMarker = UUID.fromString("6eaeffd2-b89b-436b-b0ee-75af5f0a9b81");
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protected static final UUID uuidVocFeatureQuantitative = UUID.fromString("8d449d74-5997-431f-af2d-409113b5b74e");
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protected static final UUID uuidVocFeatureBiological = UUID.fromString("f366ddf8-51da-436d-b4f4-8e86721adae6");
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protected static final UUID uuidVocFeatureMorpho = UUID.fromString("1ecf1157-6943-4790-b015-fde07c2d00d3");
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@Override
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public Rank getRankByKey(String key) throws UndefinedTransformerMethodException {
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if (key == null){return null;}
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if (key.equals("Phylum")){return Rank.PHYLUM();}
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else if (key.equals("Subphylum")){return Rank.SUBPHYLUM();}
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else if (key.equals("Superclass")){return Rank.SUPERCLASS();}
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else if (key.equals("Class")){return Rank.CLASS();}
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else if (key.equals("Subclass")){return Rank.SUBCLASS();}
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else if (key.equals("Superorder")){return Rank.SUPERORDER();}
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else if (key.equals("Order")){return Rank.ORDER();}
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else if (key.equals("Suborder")){return Rank.SUBORDER();}
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// else if (key.equals("Supercohort")){return Rank.SUPERCOHORT();}
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// else if (key.equals("Cohort")){return Rank.COHORT();}
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// else if (key.equals("Subcohort")){return Rank.SUBCOHORT();}
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else if (key.equals("Superfamily")){return Rank.SUPERFAMILY();}
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else if (key.equals("Family")){return Rank.FAMILY();}
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else if (key.equals("Subfamily")){return Rank.SUBFAMILY();}
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else if (key.equals("Tribe")){return Rank.TRIBE();}
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else if (key.equals("Genus")){return Rank.GENUS();}
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else if (key.equals("Subgenus")){return Rank.SUBGENUS();}
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else if (key.equals("Species")){return Rank.SPECIES();}
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else if (key.equals("Subspecies")){return Rank.SUBSPECIES();}
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else if (key.equals("Variety")){return Rank.VARIETY();}
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else if (key.equals("Form")){return Rank.FORM();}
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else if (key.equals("Infraorder")){return Rank.INFRAORDER();}
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// else if (key.equals("Hyporder")){return Rank.HYPORDER();}
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//to be discussed, but handles epithet correctly during import
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else if (key.equals("Group")){return Rank.SPECIESGROUP();}
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return null;
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}
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@Override
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public UUID getMarkerTypeUuid(String key) throws UndefinedTransformerMethodException {
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if (key == null){
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return null;
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}else if (key.equals("TaxGrossgruppe")){
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return uuidTaxGrossgruppeMarker;
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}else if (key.equals("EdaphoRankMarker")){
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return uuidEdaphoRankMarker;
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}
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return null;
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}
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}
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