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Revision 7b9bf97d

Added by U-BGBM\k.luther over 7 years ago

delete no data term creation and referencing code

View differences:

cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/faunaEuropaea/FaunaEuropaeaDistributionImport.java
22 22 
import org.springframework.stereotype.Component;
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import org.springframework.transaction.TransactionStatus;
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import eu.etaxonomy.cdm.hibernate.HibernateProxyHelper;


  		




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import eu.etaxonomy.cdm.io.common.Source;


  		




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import eu.etaxonomy.cdm.model.common.CdmBase;


  		




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import eu.etaxonomy.cdm.model.common.OrderedTermVocabulary;


  		




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import eu.etaxonomy.cdm.model.common.TermVocabulary;


  		




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import eu.etaxonomy.cdm.model.description.Distribution;


  		




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import eu.etaxonomy.cdm.model.description.PresenceAbsenceTerm;


  		




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import eu.etaxonomy.cdm.model.description.TaxonDescription;


  		




  ......




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		logger.warn("Start distribution doInvoke");


  		




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		ProfilerController.memorySnapshot();


  		




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		*/


  		




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		if (!state.getConfig().isDoOccurrence()){


  		




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			return;


  		




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		}


  		




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		int limit = state.getConfig().getLimitSave();


  		




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		UUID noDataUuid;


  		




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		/* Taxon store for retrieving taxa from and saving taxa to CDM */


  		




  ......




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		TransactionStatus txStatus = null;


  		




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		//txStatus = startTransaction();


  		




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		PresenceAbsenceTerm noDataStatusTerm = PresenceAbsenceTerm.NewPresenceInstance("no data", "no data", "nod");


  		




  
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		/*PresenceAbsenceTerm noDataStatusTerm = PresenceAbsenceTerm.NewPresenceInstance("no data", "no data", "nod");


  		




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		noDataUuid = noDataStatusTerm.getUuid();


  		




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		TermVocabulary<PresenceAbsenceTerm> voc = getVocabularyService().find(30);


  		




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		HibernateProxyHelper.deproxy(voc, OrderedTermVocabulary.class);


  		




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		//voc.addTerm(noDataStatusTerm);


  		




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	//	getVocabularyService().saveOrUpdate(voc);


  		




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		getTermService().save(noDataStatusTerm);


  		




  
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		getTermService().save(noDataStatusTerm);*/


  		




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		//commitTransaction(txStatus);


  		




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		FaunaEuropaeaTransformer.setUUIDs(noDataUuid);


  		




  
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	//	FaunaEuropaeaTransformer.setUUIDs(noDataUuid);


  		




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		FaunaEuropaeaImportConfigurator fauEuConfig = state.getConfig();


  		




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		Source source = fauEuConfig.getSource();


  		




  ......




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				if (((i % limit) == 0 && i != 1 ) || i == count ) {


  		




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					try {


  		




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						commitTaxaAndDistribution(state, noDataUuid, taxonUuids, fauEuTaxonMap, txStatus);


  		




  
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						commitTaxaAndDistribution(state, taxonUuids, fauEuTaxonMap, txStatus);


  		




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						taxonUuids = null;


  		




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						taxonList = null;


  		




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						fauEuTaxonMap = null;


  		




  ......




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			}


  		




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			if (taxonUuids != null){


  		




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				try {


  		




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					commitTaxaAndDistribution(state, noDataUuid, taxonUuids, fauEuTaxonMap, txStatus);


  		




  
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					commitTaxaAndDistribution(state, taxonUuids, fauEuTaxonMap, txStatus);


  		




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					taxonUuids = null;


  		




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					taxonList = null;


  		




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					fauEuTaxonMap = null;


  		




  ......




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		if(logger.isInfoEnabled()) { logger.info("End making distributions..."); }


  		




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		return;


  		




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	}


  		




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	private void commitTaxaAndDistribution(


  		




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			FaunaEuropaeaImportState state, UUID noDataUuid,


  		




  
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			FaunaEuropaeaImportState state,


  		




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			Set<UUID> taxonUuids,


  		




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			Map<UUID, FaunaEuropaeaDistributionTaxon> fauEuTaxonMap,


  		




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			TransactionStatus txStatus) throws Exception {


  		




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		 List<TaxonBase> taxonList = prepareTaxaAndDistribution(getTaxonService().find(taxonUuids), fauEuTaxonMap, noDataUuid, state);


  		




  
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		 List<TaxonBase> taxonList = prepareTaxaAndDistribution(getTaxonService().find(taxonUuids), fauEuTaxonMap, state);


  		




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		getTaxonService().save(taxonList);


  		




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		taxonList = null;


  		




  ......




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	}


  		




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	private List<TaxonBase> prepareTaxaAndDistribution(List<TaxonBase> taxonList, Map<UUID, FaunaEuropaeaDistributionTaxon> fauEuTaxonMap, UUID noData, FaunaEuropaeaImportState state) throws Exception{


  		




  
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	private List<TaxonBase> prepareTaxaAndDistribution(List<TaxonBase> taxonList, Map<UUID, FaunaEuropaeaDistributionTaxon> fauEuTaxonMap,  FaunaEuropaeaImportState state) throws Exception{


  		




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		Distribution newDistribution = null;


  		




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		NamedArea namedArea;


  		




  ......




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					newDistribution = null;


  		




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					presenceAbsenceStatus = null;


  		




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					if (fauEuHelperDistribution.getOccurrenceStatusId() != 0 && fauEuHelperDistribution.getOccurrenceStatusId() != 2 && fauEuHelperDistribution.getOccurrenceStatusId() != 1){


  		




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						presenceAbsenceStatus = (PresenceAbsenceTerm)getTermService().find(noData);


  		




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					}else{


  		




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						presenceAbsenceStatus = FaunaEuropaeaTransformer.occStatus2PresenceAbsence(fauEuHelperDistribution.getOccurrenceStatusId());


  		




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					}


  		




  
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					presenceAbsenceStatus = FaunaEuropaeaTransformer.occStatus2PresenceAbsence(fauEuHelperDistribution.getOccurrenceStatusId());


  		




  
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					namedArea = FaunaEuropaeaTransformer.areaId2TdwgArea(fauEuHelperDistribution);


  		




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      cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/faunaEuropaea/FaunaEuropaeaTransformer.java
    
  





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	//new AbsencePresenceTermUUIDs


  		




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	public static UUID noData;


  		




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	//public static UUID doubtfull_present;


  		




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	// Rank


  		




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	public static final int R_KINGDOM = 1;


  		




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	public static final int R_SUBKINGDOM = 2;


  		




  ......




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	}


  		




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	}


  		




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	public static void setUUIDs(UUID uuid){


  		




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		noData = uuid;


  		




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		//doubtfull_present = uuids.get("doubtfullPresent");


  		




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	}


  		




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	public static PresenceAbsenceTerm occStatus2PresenceAbsence_ (int occStatusId)  throws UnknownCdmTypeException{


  		




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		switch (occStatusId){


  		












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