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/**
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* Copyright (C) 2017 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.plantglossary;
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import java.io.File;
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import java.net.URI;
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import java.util.Map;
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import org.apache.log4j.Logger;
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import org.springframework.stereotype.Component;
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import eu.etaxonomy.cdm.common.CdmUtils;
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import eu.etaxonomy.cdm.io.csv.in.CsvImportBase;
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import eu.etaxonomy.cdm.model.common.Annotation;
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import eu.etaxonomy.cdm.model.common.AnnotationType;
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import eu.etaxonomy.cdm.model.common.IdentifiableSource;
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import eu.etaxonomy.cdm.model.common.Language;
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import eu.etaxonomy.cdm.model.common.OriginalSourceType;
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import eu.etaxonomy.cdm.model.term.TermType;
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import eu.etaxonomy.cdm.model.term.TermVocabulary;
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/**
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*
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* @author pplitzner
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* @since Dec 7, 2018
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*
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*/
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@Component
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public class PlantGlossaryCategoryImport extends CsvImportBase<PlantGlossaryCsvImportConfigurator, PlantGlossaryCsvImportState, File>{
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private static final long serialVersionUID = -5600766240192189822L;
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private static Logger logger = Logger.getLogger(PlantGlossaryCategoryImport.class);
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@Override
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protected void handleSingleLine(PlantGlossaryCsvImportState importState) {
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final String HEADER_LABEL = "rdfs:label";
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final String HEADER_DESCRIPTION = "skos:definition";
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final String HEADER_URI = "category_URI";
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final String HEADER_NOTES = "skos:notes";
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Map<String, String> currentRecord = importState.getCurrentRecord();
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String vocName = currentRecord.get(HEADER_LABEL);
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if(CdmUtils.isBlank(vocName)){
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// this line does not contain any vocabulary information
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return;
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}
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TermVocabulary existingVocabulary = importState.checkVocabularies(vocName, getVocabularyService());
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if(existingVocabulary!=null){
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return;
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}
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TermVocabulary<?> stateVoc = TermVocabulary.NewInstance(
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TermType.State,
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currentRecord.get(HEADER_DESCRIPTION),
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vocName,
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null,
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importState.getCitation().getUri());
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stateVoc.setUri(URI.create(currentRecord.get(HEADER_URI)));
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stateVoc.addAnnotation(Annotation.NewInstance(currentRecord.get(HEADER_NOTES), AnnotationType.EDITORIAL(), Language.ENGLISH()));
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importState.addVocabulary(stateVoc);
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IdentifiableSource source = IdentifiableSource.NewInstance(OriginalSourceType.Import, importState.getCitation().getTitle(), null, importState.getCitation(), null);
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source.setIdInSource(vocName);
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stateVoc.addSource(source);
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getVocabularyService().saveOrUpdate(stateVoc);
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}
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}
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