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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.pesi.faunaEuropaea;
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import java.sql.ResultSet;
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import java.sql.SQLException;
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import java.util.HashMap;
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import java.util.UUID;
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import org.apache.log4j.Logger;
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import eu.etaxonomy.cdm.api.application.CdmApplicationUtils;
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import eu.etaxonomy.cdm.api.service.ITermService;
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import eu.etaxonomy.cdm.io.common.TdwgAreaProvider;
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import eu.etaxonomy.cdm.model.common.DefinedTerm;
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import eu.etaxonomy.cdm.model.common.LSID;
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import eu.etaxonomy.cdm.model.common.Language;
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import eu.etaxonomy.cdm.model.common.Representation;
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import eu.etaxonomy.cdm.model.common.TermType;
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import eu.etaxonomy.cdm.model.description.PresenceAbsenceTerm;
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import eu.etaxonomy.cdm.model.location.NamedArea;
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import eu.etaxonomy.cdm.model.name.NomenclaturalStatusType;
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import eu.etaxonomy.cdm.model.name.Rank;
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import eu.etaxonomy.cdm.strategy.exceptions.UnknownCdmTypeException;
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/**
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* @author a.babadshanjan
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* @created 12.05.2009
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* @version 1.0
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*/
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public final class FaunaEuropaeaTransformer {
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private static final Logger logger = Logger.getLogger(FaunaEuropaeaTransformer.class);
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// Query
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public static final int Q_NO_RESTRICTION = -1;
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// TaxonStatus
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public static final int T_STATUS_ACCEPTED = 1;
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public static final int T_STATUS_NOT_ACCEPTED = 0;
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// Author
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public static final int A_AUCT = 1;
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public static final String A_AUCTNAME = "auct.";
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// Parenthesis
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public static final int P_PARENTHESIS = 1;
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// User
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public static final int U_ACTIVE = 1;
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//new AbsencePresenceTermUUIDs
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public static UUID noData;
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//public static UUID doubtfull_present;
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// Rank
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public static final int R_KINGDOM = 1;
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public static final int R_SUBKINGDOM = 2;
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public static final int R_SUPERPHYLUM = 3;
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public static final int R_PHYLUM = 4;
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public static final int R_SUBPHYLUM = 5;
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public static final int R_INFRAPHYLUM = 6;
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public static final int R_CLASS = 7;
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public static final int R_SUBCLASS = 8;
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public static final int R_INFRACLASS = 9;
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public static final int R_SUPERORDER = 10;
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public static final int R_ORDER = 11;
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public static final int R_SUBORDER = 12;
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public static final int R_INFRAORDER = 13;
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public static final int R_SUPERFAMILY = 14;
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public static final int R_FAMILY = 15;
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public static final int R_SUBFAMILY = 16;
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public static final int R_TRIBE = 17;
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public static final int R_SUBTRIBE = 18;
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public static final int R_GENUS = 19;
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public static final int R_SUBGENUS = 20;
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public static final int R_SPECIES = 21;
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public static final int R_SUBSPECIES = 22;
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public static PresenceAbsenceTerm occStatus2PresenceAbsence(int occStatusId) throws UnknownCdmTypeException{
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if (Integer.valueOf(occStatusId) == null) {
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return PresenceAbsenceTerm.PRESENT();
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}
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switch (occStatusId){
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case 0: return PresenceAbsenceTerm.PRESENT();
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case 2: return PresenceAbsenceTerm.ABSENT();
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case 1: return PresenceAbsenceTerm.PRESENT_DOUBTFULLY();
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default: {
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return null;
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}
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}
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}
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public static void setUUIDs(UUID uuid){
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noData = uuid;
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//doubtfull_present = uuids.get("doubtfullPresent");
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}
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public static PresenceAbsenceTerm occStatus2PresenceAbsence_ (int occStatusId) throws UnknownCdmTypeException{
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switch (occStatusId){
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case 0: return null;
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//case 110: return AbsenceTerm.CULTIVATED_REPORTED_IN_ERROR();
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case 120: return PresenceAbsenceTerm.CULTIVATED();
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// case 210: return AbsenceTerm.INTRODUCED_REPORTED_IN_ERROR();
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case 220: return PresenceAbsenceTerm.INTRODUCED_PRESENCE_QUESTIONABLE();
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case 230: return PresenceAbsenceTerm.INTRODUCED_FORMERLY_INTRODUCED();
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case 240: return PresenceAbsenceTerm.INTRODUCED_DOUBTFULLY_INTRODUCED();
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case 250: return PresenceAbsenceTerm.INTRODUCED();
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case 260: return PresenceAbsenceTerm.INTRODUCED_UNCERTAIN_DEGREE_OF_NATURALISATION();
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case 270: return PresenceAbsenceTerm.INTRODUCED_ADVENTITIOUS();
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case 280: return PresenceAbsenceTerm.INTRODUCED_NATURALIZED();
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//case 310: return AbsenceTerm.NATIVE_REPORTED_IN_ERROR();
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case 320: return PresenceAbsenceTerm.NATIVE_PRESENCE_QUESTIONABLE();
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case 330: return PresenceAbsenceTerm.NATIVE_FORMERLY_NATIVE();
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case 340: return PresenceAbsenceTerm.NATIVE_DOUBTFULLY_NATIVE();
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case 350: return PresenceAbsenceTerm.NATIVE();
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case 999: {
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logger.warn("endemic for EM can not be transformed in legal status");
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//TODO preliminary
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return PresenceAbsenceTerm.PRESENT();
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}
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default: {
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throw new UnknownCdmTypeException("Unknown occurrence status (id=" + Integer.valueOf(occStatusId).toString() + ")");
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}
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}
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}
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public static Rank rankId2Rank (ResultSet rs, boolean useUnknown) throws UnknownCdmTypeException {
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Rank result;
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try {
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int rankId = rs.getInt("rnk_id");
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int parentRankId = rs.getInt("rnk_rnk_id");
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String rankName = rs.getString("rnk_name");
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String rankLatinName = rs.getString("rnk_latinname");
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int rankCategory = rs.getInt("rnk_category");
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if (logger.isDebugEnabled()) {
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logger.debug(rankId + ", " + parentRankId + ", " + rankName + ", " + rankCategory);
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}
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try {
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result = Rank.getRankByNameOrIdInVoc(rankName);
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} catch (UnknownCdmTypeException e1) {
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switch (rankId) {
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case 0: return null;
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case R_KINGDOM: return Rank.KINGDOM();
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case R_SUBKINGDOM: return Rank.SUBKINGDOM();
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case R_SUPERPHYLUM: return Rank.SUPERPHYLUM();
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case R_PHYLUM: return Rank.PHYLUM();
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case R_SUBPHYLUM: return Rank.SUBPHYLUM();
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case R_INFRAPHYLUM: return Rank.INFRAPHYLUM();
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case R_CLASS: return Rank.CLASS();
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case R_SUBCLASS: return Rank.SUBCLASS();
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case R_INFRACLASS: return Rank.INFRACLASS();
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case R_SUPERORDER: return Rank.SUPERORDER();
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case R_ORDER: return Rank.ORDER();
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case R_SUBORDER: return Rank.SUBORDER();
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case R_INFRAORDER: return Rank.INFRAORDER();
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case R_SUPERFAMILY: return Rank.SUPERFAMILY();
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case R_FAMILY: return Rank.FAMILY();
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case R_SUBFAMILY: return Rank.SUBFAMILY();
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case R_TRIBE: return Rank.TRIBE();
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case R_SUBTRIBE: return Rank.SUBTRIBE();
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case R_GENUS: return Rank.GENUS();
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case R_SUBGENUS: return Rank.SUBGENUS();
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case R_SPECIES: return Rank.SPECIES();
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case R_SUBSPECIES: return Rank.SUBSPECIES();
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default: {
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if (useUnknown){
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logger.error("Rank unknown. Created UNKNOWN_RANK");
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return Rank.UNKNOWN_RANK();
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}
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throw new UnknownCdmTypeException("Unknown Rank id" + Integer.valueOf(rankId).toString());
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}
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}
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}
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return result;
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} catch (SQLException e) {
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e.printStackTrace();
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logger.warn("Exception occurred. Created UNKNOWN_RANK instead");
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return Rank.UNKNOWN_RANK();
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}
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}
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public static NamedArea areaId2TdwgArea (FaunaEuropaeaDistribution fauEuDistribution)
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throws UnknownCdmTypeException {
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NamedArea tdwgArea = null;
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try {
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int areaId = fauEuDistribution.getAreaId();
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String areaName = fauEuDistribution.getAreaName();
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String areaCode = fauEuDistribution.getAreaCode();
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int extraLimital = fauEuDistribution.getExtraLimital();
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//TODO: Verify mappings with comments. Those don't map to TDWG areas.
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if (areaCode.equals("AD")) {
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("SPA-AN");
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} else if (areaCode.equals("AL")) {
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("ALB-OO");
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} else if (areaCode.equals("AT")) {
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("AUT-AU");
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} else if (areaCode.equals("AUS")) {
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("AUS"); // Australian region - Australia
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} else if (areaCode.equals("BA")) {
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("YUG-BH");
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} else if (areaCode.equals("BE")) {
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("BGM-BE");
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} else if (areaCode.equals("BG")) {
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("BUL-OO");
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} else if (areaCode.equals("BY")) {
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("BLR-OO");
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} else if (areaCode.equals("CH")) {
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("SWI-OO");
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} else if (areaCode.equals("CY")) {
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("CYP-OO");
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} else if (areaCode.equals("CZ")) {
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("CZE-CZ");
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} else if (areaCode.equals("DE")) {
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240
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("GER-OO");
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} else if (areaCode.equals("DK-DEN")) {
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("DEN-OO");
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} else if (areaCode.equals("DK-FOR")) {
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("FOR-OO");
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} else if (areaCode.equals("EE")) {
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("BLT-ES");
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247
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} else if (areaCode.equals("ES-BAL")) {
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("BAL-OO");
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249
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} else if (areaCode.equals("ES-CNY")) {
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250
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("CNY-OO");
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251
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} else if (areaCode.equals("ES-SPA")) {
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252
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("SPA-SP");
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253
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} else if (areaCode.equals("FI")) {
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254
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("FIN-OO");
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255
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} else if (areaCode.equals("FR-COR")) {
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256
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("COR-OO");
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257
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} else if (areaCode.equals("FR-FRA")) {
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258
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("FRA-FR");
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259
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} else if (areaCode.equals("GB-CI")) {
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260
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("FRA-CI");
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261
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} else if (areaCode.equals("GB-GI")) {
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262
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("SPA-GI");
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263
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} else if (areaCode.equals("GB-GRB")) {
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264
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("GRB-OO");
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265
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} else if (areaCode.equals("GB-NI")) {
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266
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("IRE-NI");
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267
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} else if (areaCode.equals("GR-GRC")) {
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268
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("GRC-OO");
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269
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} else if (areaCode.equals("HR")) {
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270
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("YUG-CR");
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271
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} else if (areaCode.equals("HU")) {
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272
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("HUN-OO");
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273
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} else if (areaCode.equals("IE")) {
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274
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("IRE-IR");
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275
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} else if (areaCode.equals("IS")) {
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276
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("ICE-OO");
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277
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} else if (areaCode.equals("IT-ITA")) {
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278
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("ITA-IT");
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279
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} else if (areaCode.equals("IT-SAR")) {
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280
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("SAR-OO");
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281
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} else if (areaCode.equals("IT-SI")) {
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282
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("SIC-SI");
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283
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} else if (areaCode.equals("LI")) {
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284
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("AUT-LI");
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285
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} else if (areaCode.equals("LT")) {
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286
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("BLT-LI");
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287
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} else if (areaCode.equals("LU")) {
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288
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("BGM-LU");
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289
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} else if (areaCode.equals("LV")) {
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290
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("BLT-LA");
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291
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} else if (areaCode.equals("MC")) {
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292
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("FRA-MO");
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293
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} else if (areaCode.equals("MD")) {
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294
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("UKR-MO");
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295
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} else if (areaCode.equals("MK")) {
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296
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("YUG-MA");
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297
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} else if (areaCode.equals("MT")) {
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298
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("SIC-MA");
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299
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} else if (areaCode.equals("NL")) {
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300
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("NET-OO");
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301
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} else if (areaCode.equals("NO-NOR")) {
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302
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("NOR-OO");
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303
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} else if (areaCode.equals("NO-SVA")) {
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304
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("SVA-OO");
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305
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} else if (areaCode.equals("PL")) {
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306
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("POL-OO");
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307
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} else if (areaCode.equals("PT-AZO")) {
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308
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("AZO-OO");
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309
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} else if (areaCode.equals("PT-MDR")) {
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310
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tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("MDR-OO");
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311
|
} else if (areaCode.equals("PT-POR")) {
|
|
312
|
tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("POR-OO");
|
|
313
|
} else if (areaCode.equals("PT-SEL")) {
|
|
314
|
tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("SEL-OO");
|
|
315
|
} else if (areaCode.equals("RO")) {
|
|
316
|
tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("ROM-OO");
|
|
317
|
} else if (areaCode.equals("RU-KGD")) {
|
|
318
|
tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("BLT-KA");
|
|
319
|
} else if (areaCode.equals("RU-RUC")) {
|
|
320
|
tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("RUC-OO");
|
|
321
|
} else if (areaCode.equals("RU-RUE")) {
|
|
322
|
tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("RUE-OO");
|
|
323
|
} else if (areaCode.equals("RU-RUN")) {
|
|
324
|
tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("RUN-OO");
|
|
325
|
} else if (areaCode.equals("RU-RUS")) {
|
|
326
|
tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("RUS-OO");
|
|
327
|
} else if (areaCode.equals("RU-RUW")) {
|
|
328
|
tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("RUW-OO");
|
|
329
|
} else if (areaCode.equals("SE")) {
|
|
330
|
tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("SWE-OO");
|
|
331
|
} else if (areaCode.equals("SI")) {
|
|
332
|
tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("YUG-SL");
|
|
333
|
} else if (areaCode.equals("SK")) {
|
|
334
|
tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("CZE-SK");
|
|
335
|
} else if (areaCode.equals("SM")) {
|
|
336
|
tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("ITA-SM");
|
|
337
|
} else if (areaCode.equals("TR-TUE")) {
|
|
338
|
tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("TUE-OO");
|
|
339
|
}else if (areaCode.equals("UA")) {
|
|
340
|
tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("UKR-UK"); //UKraine including Crimea
|
|
341
|
} else if (areaCode.equals("VA")) {
|
|
342
|
tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("ITA-VC");
|
|
343
|
} else if (areaCode.equals("YU")) {
|
|
344
|
tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("YUG");
|
|
345
|
} else {
|
|
346
|
throw new UnknownCdmTypeException("Unknown Area " + areaCode);
|
|
347
|
}
|
|
348
|
|
|
349
|
if (logger.isDebugEnabled()) {
|
|
350
|
logger.debug(areaId + ", " + areaName + ", " + areaCode + ", " + extraLimital);
|
|
351
|
}
|
|
352
|
|
|
353
|
} catch (Exception e) {
|
|
354
|
//e.printStackTrace();
|
|
355
|
logger.debug("Exception occurred. Area could not be mapped." + fauEuDistribution.getAreaName());
|
|
356
|
return null;
|
|
357
|
}
|
|
358
|
|
|
359
|
return tdwgArea;
|
|
360
|
}
|
|
361
|
|
|
362
|
public static UUID uuidAreaAUS = UUID.fromString("cf979ca8-8cb6-42df-b2ce-1f432ec7c26b");
|
|
363
|
public static UUID uuidAreaAFR = UUID.fromString("07ac5e75-9fc9-4aa0-938c-1324c9618b97");
|
|
364
|
public static UUID uuidAreaEPA = UUID.fromString("e83446d7-7379-4beb-be05-295f8da6f5ae");
|
|
365
|
public static UUID uuidAreaGR_AEG = UUID.fromString("6bd422aa-9911-4b80-8595-0f6d1ecd5eee");
|
|
366
|
public static UUID uuidAreaGR_CYC = UUID.fromString("8e7d7f1e-3e4d-4f7c-96ec-93ec91e528d6");
|
|
367
|
public static UUID uuidAreaGR_DOD = UUID.fromString("6d6f6842-924e-440b-9e7e-3df1922bf4a6");
|
|
368
|
public static UUID uuidAreaNAF = UUID.fromString("d2c54b1e-5f9f-455d-b308-6859cb153c7b");
|
|
369
|
public static UUID uuidAreaNEA = UUID.fromString("aa87f6b8-110b-44b5-a329-91a08f1a4cc9");
|
|
370
|
public static UUID uuidAreaNEO = UUID.fromString("0e6e0ce9-c6ab-46bc-80b9-aee4a0620e78");
|
|
371
|
public static UUID uuidAreaNRE = UUID.fromString("d51876c2-eaf6-4c7f-963e-337dd3e0d729");
|
|
372
|
public static UUID uuidAreaORR = UUID.fromString("04cab4f8-b316-4e21-9bcc-236a45e4e83d");
|
|
373
|
public static UUID uuidAreaGR_CR = UUID.fromString("2ef9fa6c-7c3f-431a-96c9-5980c55fc440");
|
|
374
|
public static UUID uuidAreaGR_GRC = UUID.fromString("b5d33c78-91e7-467a-9c2d-6c337b78d31a");
|
|
375
|
public static UUID uuidAreaUA = UUID.fromString("859cf055-a208-4f30-8e6e-361f165c6fa9");
|
|
376
|
public static UUID uuidAreaRU_FJL = UUID.fromString("84671068-2f18-40cb-933a-e7e1c0e37cc8");
|
|
377
|
public static UUID uuidAreaRU_NOZ = UUID.fromString("64cce0aa-0222-4740-8fa2-dbf0330e9266");
|
|
378
|
|
|
379
|
|
|
380
|
public final static HashMap<String, UUID> abbrToUUID = new HashMap<String,UUID>();
|
|
381
|
static
|
|
382
|
{
|
|
383
|
abbrToUUID.put("AUS", uuidAreaAUS);
|
|
384
|
abbrToUUID.put("AFR", uuidAreaAFR);
|
|
385
|
abbrToUUID.put("EPA", uuidAreaEPA);
|
|
386
|
abbrToUUID.put("GR-AEG", uuidAreaGR_AEG);
|
|
387
|
abbrToUUID.put("GR-CYC", uuidAreaGR_CYC);
|
|
388
|
abbrToUUID.put("GR-DOD", uuidAreaGR_DOD);
|
|
389
|
abbrToUUID.put("NAF", uuidAreaNAF);
|
|
390
|
abbrToUUID.put("NEA", uuidAreaNEA);
|
|
391
|
abbrToUUID.put("NEO", uuidAreaNEO);
|
|
392
|
abbrToUUID.put("NRE", uuidAreaNRE);
|
|
393
|
abbrToUUID.put("ORR", uuidAreaORR);
|
|
394
|
abbrToUUID.put("GR-KRI", uuidAreaGR_CR);
|
|
395
|
abbrToUUID.put("GR-GRC", uuidAreaGR_GRC);
|
|
396
|
abbrToUUID.put("UA", uuidAreaUA);
|
|
397
|
abbrToUUID.put("RU-FJL", uuidAreaRU_FJL);
|
|
398
|
abbrToUUID.put("RU-NOZ", uuidAreaRU_NOZ);
|
|
399
|
|
|
400
|
|
|
401
|
}
|
|
402
|
|
|
403
|
public final static HashMap<Integer, Language> languageFK2Language = new HashMap<Integer,Language>();
|
|
404
|
static
|
|
405
|
{
|
|
406
|
languageFK2Language.put(1, Language.ALBANIAN());
|
|
407
|
languageFK2Language.put(4, Language.AZERBAIJANI());
|
|
408
|
languageFK2Language.put(6, Language.BULGARIAN());
|
|
409
|
languageFK2Language.put(10, Language.DANISH());
|
|
410
|
languageFK2Language.put(11, Language.DUTCH_MIDDLE());
|
|
411
|
languageFK2Language.put(12, Language.ENGLISH());
|
|
412
|
languageFK2Language.put(16, Language.FRENCH());
|
|
413
|
|
|
414
|
languageFK2Language.put(18, Language.GERMAN());
|
|
415
|
languageFK2Language.put(19, Language.GREEK_MODERN());
|
|
416
|
languageFK2Language.put(23, Language.HEBREW());
|
|
417
|
languageFK2Language.put(24, Language.ITALIAN());
|
|
418
|
languageFK2Language.put(26, Language.LITHUANIAN());
|
|
419
|
languageFK2Language.put(30, Language.NORWEGIAN());
|
|
420
|
languageFK2Language.put(31, Language.POLISH());
|
|
421
|
languageFK2Language.put(34, Language.RUSSIAN());
|
|
422
|
languageFK2Language.put(54, Language.SLOVAK());
|
|
423
|
languageFK2Language.put(55, Language.SLOVENIAN());
|
|
424
|
languageFK2Language.put(57, Language.SWEDISH());
|
|
425
|
languageFK2Language.put(58, Language.TURKISH());
|
|
426
|
|
|
427
|
languageFK2Language.put(59, Language.UKRAINIAN());
|
|
428
|
languageFK2Language.put(60, Language.WELSH());
|
|
429
|
languageFK2Language.put(62, Language.GALICIAN());
|
|
430
|
//languageFK2Language.put(83, getEnglishUS());
|
|
431
|
languageFK2Language.put(97, Language.IRISH());
|
|
432
|
|
|
433
|
|
|
434
|
languageFK2Language.put(100, Language.NORWEGIAN_BOKMOL());
|
|
435
|
languageFK2Language.put(101, Language.NORWEGIAN_NYNORSK());
|
|
436
|
|
|
437
|
languageFK2Language.put(102, Language.ARABIC());
|
|
438
|
languageFK2Language.put(103, Language.ARMENIAN());
|
|
439
|
|
|
440
|
languageFK2Language.put(104, Language.CATALAN_VALENCIAN());
|
|
441
|
languageFK2Language.put(105, Language.CHINESE());
|
|
442
|
languageFK2Language.put(106, Language.ESTONIAN());
|
|
443
|
languageFK2Language.put(107, Language.FINNISH());
|
|
444
|
|
|
445
|
languageFK2Language.put(108, Language.GAELIC_SCOTTISH_GAELIC());
|
|
446
|
languageFK2Language.put(109, Language.JAPANESE());
|
|
447
|
languageFK2Language.put(110, Language.KOREAN());
|
|
448
|
languageFK2Language.put(111, Language.LATIN());
|
|
449
|
languageFK2Language.put(112, Language.LATVIAN());
|
|
450
|
languageFK2Language.put(113, Language.PERSIAN());
|
|
451
|
languageFK2Language.put(114, Language.PORTUGUESE());
|
|
452
|
languageFK2Language.put(115, Language.ROMANIAN());
|
|
453
|
languageFK2Language.put(117, Language.SWAHILI());
|
|
454
|
languageFK2Language.put(118, Language.SPANISH_CASTILIAN());
|
|
455
|
|
|
456
|
|
|
457
|
|
|
458
|
|
|
459
|
|
|
460
|
}
|
|
461
|
public static UUID getUUIDByAreaAbbr(String abbr){
|
|
462
|
return abbrToUUID.get(abbr);
|
|
463
|
}
|
|
464
|
|
|
465
|
public static UUID uuidNomStatusTempNamed = UUID.fromString("aa6ada5a-ca21-4fef-b76f-9ae237e9c4ae");
|
|
466
|
|
|
467
|
static NomenclaturalStatusType nomStatusTempNamed;
|
|
468
|
|
|
469
|
private static DefinedTerm taxonomicSpecialistType;
|
|
470
|
|
|
471
|
private static UUID uuidTaxonomicSpecialistType = UUID.fromString("006879e4-cf99-405a-a720-2e81d9cbc34c");
|
|
472
|
|
|
473
|
private static DefinedTerm groupCoordinatorType;
|
|
474
|
|
|
475
|
private static UUID uuidGroupCoordinatorType = UUID.fromString("3a827ebe-4410-40e5-a241-941b17028e11");
|
|
476
|
|
|
477
|
private static DefinedTerm associateSpecialistType;
|
|
478
|
|
|
479
|
private static UUID uuidAssociateSpecialistType = UUID.fromString("8258f73c-e0ad-4f87-a88c-53c58c08bba9");
|
|
480
|
|
|
481
|
private static Language langEnglishUS;
|
|
482
|
|
|
483
|
private static UUID uuidEnglishUS;
|
|
484
|
|
|
485
|
|
|
486
|
|
|
487
|
public static NomenclaturalStatusType getNomStatusTempNamed(ITermService termService){
|
|
488
|
if (nomStatusTempNamed == null){
|
|
489
|
nomStatusTempNamed = (NomenclaturalStatusType)termService.find(uuidNomStatusTempNamed);
|
|
490
|
if (nomStatusTempNamed == null){
|
|
491
|
nomStatusTempNamed = NomenclaturalStatusType.NewInstance("temporary named", "temporary named", "temp. named", Language.ENGLISH());
|
|
492
|
Representation repLatin = Representation.NewInstance("", "", "", Language.LATIN());
|
|
493
|
nomStatusTempNamed.addRepresentation(repLatin);
|
|
494
|
nomStatusTempNamed.setUuid(uuidNomStatusTempNamed);
|
|
495
|
NomenclaturalStatusType.ALTERNATIVE().getVocabulary().addTerm(nomStatusTempNamed);
|
|
496
|
termService.save(nomStatusTempNamed);
|
|
497
|
}
|
|
498
|
}
|
|
499
|
return nomStatusTempNamed;
|
|
500
|
}
|
|
501
|
|
|
502
|
public static Language getEnglishUS(ITermService termService){
|
|
503
|
if (langEnglishUS == null){
|
|
504
|
langEnglishUS = (Language)termService.find(uuidEnglishUS);
|
|
505
|
if (langEnglishUS == null){
|
|
506
|
logger.info("create language english-us");
|
|
507
|
langEnglishUS = Language.NewInstance("english-United States", "english-US", "eng-US");
|
|
508
|
langEnglishUS.setUuid(uuidEnglishUS);
|
|
509
|
|
|
510
|
langEnglishUS = (Language)termService.save(langEnglishUS);
|
|
511
|
languageFK2Language.put(83, langEnglishUS);
|
|
512
|
}
|
|
513
|
}
|
|
514
|
return langEnglishUS;
|
|
515
|
}
|
|
516
|
/**
|
|
517
|
* @return
|
|
518
|
*/
|
|
519
|
public static DefinedTerm getTaxonomicSpecialistType(ITermService termService) {
|
|
520
|
if (taxonomicSpecialistType == null){
|
|
521
|
taxonomicSpecialistType = (DefinedTerm)termService.find(uuidTaxonomicSpecialistType);
|
|
522
|
if (taxonomicSpecialistType == null){
|
|
523
|
logger.info("create associated specialist type");
|
|
524
|
taxonomicSpecialistType = DefinedTerm.NewInstance(TermType.TaxonNodeAgentRelationType, "taxonomic specialist", "taxonomic specialist", "TS");
|
|
525
|
|
|
526
|
taxonomicSpecialistType.setUuid(uuidTaxonomicSpecialistType);
|
|
527
|
|
|
528
|
termService.save(taxonomicSpecialistType);
|
|
529
|
}
|
|
530
|
}
|
|
531
|
return taxonomicSpecialistType;
|
|
532
|
}
|
|
533
|
/**
|
|
534
|
* @return
|
|
535
|
*/
|
|
536
|
public static DefinedTerm getGroupCoordinatorType(ITermService termService) {
|
|
537
|
if (groupCoordinatorType == null){
|
|
538
|
groupCoordinatorType = (DefinedTerm)termService.find(uuidGroupCoordinatorType);
|
|
539
|
if (groupCoordinatorType == null){
|
|
540
|
groupCoordinatorType = DefinedTerm.NewInstance(TermType.TaxonNodeAgentRelationType, "group coordinator", "group coordinator", "GC");
|
|
541
|
|
|
542
|
groupCoordinatorType.setUuid(uuidGroupCoordinatorType);
|
|
543
|
|
|
544
|
termService.save(groupCoordinatorType);
|
|
545
|
}
|
|
546
|
}
|
|
547
|
return groupCoordinatorType;
|
|
548
|
}
|
|
549
|
|
|
550
|
|
|
551
|
|
|
552
|
/**
|
|
553
|
* @return
|
|
554
|
*/
|
|
555
|
public static DefinedTerm getAssociateSpecialistType(ITermService termService) {
|
|
556
|
if (associateSpecialistType == null){
|
|
557
|
associateSpecialistType = (DefinedTerm)termService.find(uuidAssociateSpecialistType);
|
|
558
|
if (associateSpecialistType == null){
|
|
559
|
associateSpecialistType = DefinedTerm.NewInstance(TermType.TaxonNodeAgentRelationType, "associate specialist", "associate specialist", "AS");
|
|
560
|
|
|
561
|
associateSpecialistType.setUuid(uuidAssociateSpecialistType);
|
|
562
|
|
|
563
|
termService.save(associateSpecialistType);
|
|
564
|
}
|
|
565
|
}
|
|
566
|
return associateSpecialistType;
|
|
567
|
}
|
|
568
|
public static Language langFK2Language(
|
|
569
|
Integer languageFk) {
|
|
570
|
|
|
571
|
Language result = languageFK2Language.get(languageFk);
|
|
572
|
|
|
573
|
return result;
|
|
574
|
}
|
|
575
|
|
|
576
|
|
|
577
|
}
|