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Revision 783428fc

Added by Patrick Plitzner almost 8 years ago

#5448 Move import of concept relationships to classification import
class

  • there we already have the accepted taxa for the synonyms

View differences:

app-import/src/main/java/eu/etaxonomy/cdm/io/redlist/gefaesspflanzen/RedListGefaesspflanzenImportClassification.java
36 36 
import eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType;
37 37 
import eu.etaxonomy.cdm.model.taxon.Taxon;
38 38 
import eu.etaxonomy.cdm.model.taxon.TaxonBase;
39 
import eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType;
39 40 

  		




  40
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/**


  		




  41
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 *


  		




  ......




  131
  132
  
    
        String gueltString = rs.getString(RedListUtil.GUELT);


  		




  132
  133
  
    
        String taxZusatzString = rs.getString(RedListUtil.TAX_ZUSATZ);


  		




  133
  134
  
    

  		




  
  135
  
    
        String relationE = rs.getString(RedListUtil.E);


  		




  
  136
  
    
        String relationW = rs.getString(RedListUtil.W);


  		




  
  137
  
    
        String relationK = rs.getString(RedListUtil.K);


  		




  
  138
  
    
        String relationAW = rs.getString(RedListUtil.AW);


  		




  
  139
  
    
        String relationAO = rs.getString(RedListUtil.AO);


  		




  
  140
  
    
        String relationR = rs.getString(RedListUtil.R);


  		




  
  141
  
    
        String relationO = rs.getString(RedListUtil.O);


  		




  
  142
  
    
        String relationS = rs.getString(RedListUtil.S);


  		




  
  143
  
    

  		




  134
  144
  
    
        //Gesamtliste


  		




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        TaxonBase<?> taxonBaseGL = state.getRelatedObject(RedListUtil.TAXON_GESAMTLISTE_NAMESPACE, String.valueOf(id), TaxonBase.class);


  		




  136
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        TaxonBase<?> parentBaseGL = state.getRelatedObject(RedListUtil.TAXON_GESAMTLISTE_NAMESPACE, parentId, TaxonBase.class);


  		




  ......




  160
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        }


  		




  161
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        //add taxa for concept relationships to E, W, K, AW, AO, R, O, S


  		




  163
  
  
    
        addTaxonToClassification(classificationE, RedListUtil.CLASSIFICATION_NAMESPACE_E, id, state);


  		




  164
  
  
    
        addTaxonToClassification(classificationW, RedListUtil.CLASSIFICATION_NAMESPACE_W, id, state);


  		




  165
  
  
    
        addTaxonToClassification(classificationK, RedListUtil.CLASSIFICATION_NAMESPACE_K, id, state);


  		




  166
  
  
    
        addTaxonToClassification(classificationAW, RedListUtil.CLASSIFICATION_NAMESPACE_AW, id, state);


  		




  167
  
  
    
        addTaxonToClassification(classificationAO, RedListUtil.CLASSIFICATION_NAMESPACE_AO, id, state);


  		




  168
  
  
    
        addTaxonToClassification(classificationR, RedListUtil.CLASSIFICATION_NAMESPACE_R, id, state);


  		




  169
  
  
    
        addTaxonToClassification(classificationO, RedListUtil.CLASSIFICATION_NAMESPACE_O, id, state);


  		




  170
  
  
    
        addTaxonToClassification(classificationS, RedListUtil.CLASSIFICATION_NAMESPACE_S, id, state);


  		




  
  173
  
    
        addTaxonToClassification(classificationE, RedListUtil.CLASSIFICATION_NAMESPACE_E, relationE, taxonBaseGL, taxonBaseCL, id, state);


  		




  
  174
  
    
        addTaxonToClassification(classificationW, RedListUtil.CLASSIFICATION_NAMESPACE_W, relationW, taxonBaseGL, taxonBaseCL, id, state);


  		




  
  175
  
    
        addTaxonToClassification(classificationK, RedListUtil.CLASSIFICATION_NAMESPACE_K, relationK, taxonBaseGL, taxonBaseCL, id, state);


  		




  
  176
  
    
        addTaxonToClassification(classificationAW, RedListUtil.CLASSIFICATION_NAMESPACE_AW, relationAW, taxonBaseGL, taxonBaseCL, id, state);


  		




  
  177
  
    
        addTaxonToClassification(classificationAO, RedListUtil.CLASSIFICATION_NAMESPACE_AO, relationAO, taxonBaseGL, taxonBaseCL, id, state);


  		




  
  178
  
    
        addTaxonToClassification(classificationR, RedListUtil.CLASSIFICATION_NAMESPACE_R, relationR, taxonBaseGL, taxonBaseCL, id, state);


  		




  
  179
  
    
        addTaxonToClassification(classificationO, RedListUtil.CLASSIFICATION_NAMESPACE_O, relationO, taxonBaseGL, taxonBaseCL, id, state);


  		




  
  180
  
    
        addTaxonToClassification(classificationS, RedListUtil.CLASSIFICATION_NAMESPACE_S, relationS, taxonBaseGL, taxonBaseCL, id, state);


  		




  171
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    }


  		




  172
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  173
  
  
    
    private void addTaxonToClassification(Classification classification, String classificationNamespace, long id, RedListGefaesspflanzenImportState state){


  		




  
  183
  
    
    private void addTaxonToClassification(Classification classification, String classificationNamespace, String relationString, final TaxonBase<?> gesamtListeTaxon, final TaxonBase<?> checklisteTaxon, long id, RedListGefaesspflanzenImportState state){


  		




  174
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        Taxon taxon = HibernateProxyHelper.deproxy(state.getRelatedObject(classificationNamespace, String.valueOf(id), TaxonBase.class), Taxon.class);


  		




  
  185
  
    
        //add concept relation to gesamtliste and checkliste


  		




  
  186
  
    
        if(CdmUtils.isNotBlank(relationString) && !relationString.equals(".")){


  		




  
  187
  
    
            //if the related concept in gesamtliste/checkliste is a synonym then we


  		




  
  188
  
    
            //create a relation to the accepted taxon


  		




  
  189
  
    
            Taxon acceptedGesamtListeTaxon = getAcceptedTaxon(gesamtListeTaxon);


  		




  
  190
  
    
            Taxon acceptedChecklistTaxon = getAcceptedTaxon(checklisteTaxon);


  		




  
  191
  
    
            String relationSubstring = relationString.substring(relationString.length()-1, relationString.length());


  		




  
  192
  
    
            TaxonRelationshipType taxonRelationshipTypeByKey = new RedListGefaesspflanzenTransformer().getTaxonRelationshipTypeByKey(relationSubstring);


  		




  
  193
  
    
            if(taxonRelationshipTypeByKey==null){


  		




  
  194
  
    
                RedListUtil.logMessage(id, "Could not interpret relationship "+relationString+" for taxon "+gesamtListeTaxon.generateTitle(), logger);


  		




  
  195
  
    
            }


  		




  
  196
  
    
            //there is no type "included in" so we have to reverse the direction


  		




  
  197
  
    
            if(relationSubstring.equals("<")){


  		




  
  198
  
    
                if(acceptedGesamtListeTaxon!=null){


  		




  
  199
  
    
                    acceptedGesamtListeTaxon.addTaxonRelation(taxon, taxonRelationshipTypeByKey, null, null);


  		




  
  200
  
    
                }


  		




  
  201
  
    
                if(acceptedChecklistTaxon!=null) {


  		




  
  202
  
    
                    acceptedChecklistTaxon.addTaxonRelation(taxon, taxonRelationshipTypeByKey, null, null);


  		




  
  203
  
    
                }


  		




  
  204
  
    
            }


  		




  
  205
  
    
            else{


  		




  
  206
  
    
                if(acceptedGesamtListeTaxon!=null){


  		




  
  207
  
    
                    taxon.addTaxonRelation(acceptedGesamtListeTaxon, taxonRelationshipTypeByKey, null, null);


  		




  
  208
  
    
                }


  		




  
  209
  
    
                if(acceptedChecklistTaxon!=null) {


  		




  
  210
  
    
                    taxon.addTaxonRelation(acceptedChecklistTaxon, taxonRelationshipTypeByKey, null, null);


  		




  
  211
  
    
                }


  		




  
  212
  
    
            }


  		




  
  213
  
    
        }


  		




  
  214
  
    

  		




  175
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        if(taxon!=null){//not all taxa exist in these classifications


  		




  176
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            taxon.setSec(classification.getReference());


  		




  177
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            taxon.setTitleCache(null);//Reset title cache to reflect sec ref in title


  		












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