EDIT

/**

* Copyright (C) 2007 EDIT

* European Distributed Institute of Taxonomy

* http://www.e-taxonomy.eu

*

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.app.phycobank;

import java.net.URI;

import java.util.Date;

import java.util.UUID;

import org.apache.log4j.Logger;

import eu.etaxonomy.cdm.app.common.CdmDestinations;

import eu.etaxonomy.cdm.common.monitor.DefaultProgressMonitor;

import eu.etaxonomy.cdm.database.DbSchemaValidation;

import eu.etaxonomy.cdm.database.ICdmDataSource;

import eu.etaxonomy.cdm.io.common.CdmDefaultImport;

import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;

import eu.etaxonomy.cdm.io.phycobank.PhycobankHigherClassificationImportConfigurator;

import eu.etaxonomy.cdm.model.agent.Person;

import eu.etaxonomy.cdm.model.common.VerbatimTimePeriod;

import eu.etaxonomy.cdm.model.reference.Reference;

import eu.etaxonomy.cdm.model.reference.ReferenceFactory;

import eu.etaxonomy.cdm.strategy.parser.TimePeriodParser;

/**

 * Activator to import phycobank higher classifications.

 * @author a.mueller

 * @since 2018-08-09

 */

public class PhycobankHigherClassificationActivator {

    @SuppressWarnings("unused")

    private static final Logger logger = Logger.getLogger(PhycobankHigherClassificationActivator.class);

    // ====================================================================================

    //database validation status (create, update, validate ...)

    static DbSchemaValidation hbm2dll = DbSchemaValidation.VALIDATE;

    static ICdmDataSource cdmDestination = CdmDestinations.localH2();

//    static ICdmDataSource cdmDestination = CdmDestinations.cdm_local_test_mysql();

//    static ICdmDataSource cdmDestination = CdmDestinations.cdm_test_phycobank();

    static Reference secRef = getSecReference_Frey();

//    static Reference secRef = getSecReference_WoRMS();

    static String worksheetName = secRef.equals(getSecReference_WoRMS())? "WoRMS" :

        secRef.equals(getSecReference_Frey())? "HigherRanksEntwurfNeu" : null;

    static UUID uuidRefPhycobank = UUID.fromString("8058a5ec-60ee-4a04-8c17-5623e3a4795c");

    //check - import

    static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK;

    private void doImport(ICdmDataSource cdmDestination){

        URI source = fileURI();

        Reference sourceRef = getSourceReference();

        //make Source

        PhycobankHigherClassificationImportConfigurator config= PhycobankHigherClassificationImportConfigurator.NewInstance(source, cdmDestination);

        config.setWorksheetName(worksheetName);

        config.setCheck(check);

        config.setDbSchemaValidation(hbm2dll);

        config.setSourceReference(sourceRef);

        config.setSecReference(secRef);

        config.setPhycobankReference(getPhycobankReference());

        config.setProgressMonitor(DefaultProgressMonitor.NewInstance());

        CdmDefaultImport<PhycobankHigherClassificationImportConfigurator> myImport = new CdmDefaultImport<>();

        myImport.invoke(config);

        System.exit(0);

    }

    private static Reference getSecReference_Frey() {

        Reference result = ReferenceFactory.newBook();

        result.setTitle("Syllabus of the plant families");

        result.setDatePublished(VerbatimTimePeriod.NewVerbatimInstance(2015));

        result.setPublisher("Borntraeger");

        result.setPlacePublished("Stuttgart");

        Person author = Person.NewInstance();

        author.setFamilyName("Frey");

        author.setInitials("W.");

        result.setAuthorship(author);

        result.setUuid(UUID.fromString("2b4a3a67-e432-4d6b-b716-081045179df9"));

        return result;

    }

    private static Reference getSecReference_WoRMS() {

        Reference result = ReferenceFactory.newDatabase();

        result.setTitle("WoRMS World Register of Marine Species");

        result.setDatePublished(TimePeriodParser.parseStringVerbatim("2018-04-20"));

        result.setUri(URI.create("http://www.marinespecies.org/index.php"));

        result.setUuid(UUID.fromString("b33daeb0-8770-4ee2-92d0-80aaa87bfba2"));

        return result;

    }

    private static Reference getPhycobankReference() {

        Reference result = ReferenceFactory.newWebPage();

        result.setTitle("Phycobank");

        result.setDatePublished(TimePeriodParser.parseStringVerbatim("2018+"));

        result.setUri(URI.create("https://www.phycobank.org/"));

        result.setUuid(uuidRefPhycobank);

        return result;

    }

    private Reference getSourceReference() {

        Reference result = ReferenceFactory.newDatabase();

        result.setTitle("Higher classification Excel import: " + fileName());

        result.setUri(fileURI());

        result.setDatePublished(VerbatimTimePeriod.NewVerbatimInstance(new Date(), null));

        return result;

    }

    public static String fileName(){

        return "Algen_Syllabus_NormalImplied_Test.xlsx";

    }

    public static String filePath(){

        return "file:////BGBM-PESIHPC/Phycobank/";

    }

    public static URI fileURI() {

        return URI.create(filePath() + fileName());

    }

    /**

     * @param args

     */

    public static void main(String[] args) {

        PhycobankHigherClassificationActivator me = new PhycobankHigherClassificationActivator();

        me.doImport(cdmDestination);

    }

}