Revision 76a5e528
Added by Andreas Müller almost 6 years ago
| app-import/src/main/java/eu/etaxonomy/cdm/io/edaphobase/EdaphobaseTaxonImport.java | ||
|---|---|---|
| 175 | 175 |
String parentNameStr = rs.getString("parentName");
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| 176 | 176 |
String grandParentNameStr = rs.getString("grandParentName");
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| 177 | 177 |
String grandGrandParentNameStr = rs.getString("grandGrandParentName");
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| 178 |
String editUuid = rs.getString("edit_uuid");
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| 178 | 179 |
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| 179 | 180 |
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| 180 | 181 |
if (isDeleted){
|
| ... | ... | |
| 297 | 298 |
} |
| 298 | 299 |
name.setNomenclaturalReference(nomRef); |
| 299 | 300 |
} |
| 300 |
name.setNomenclaturalMicroReference(StringUtils.isBlank(pages)? null : pages);
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| 301 |
name.setNomenclaturalMicroReference(isBlank(pages)? null : pages); |
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| 301 | 302 |
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| 302 | 303 |
//taxon |
| 303 | 304 |
Reference secRef = state.getRelatedObject(REFERENCE_NAMESPACE, state.getConfig().getSecUuid().toString(), Reference.class); |
| ... | ... | |
| 328 | 329 |
//id |
| 329 | 330 |
ImportHelper.setOriginalSource(taxonBase, state.getTransactionalSourceReference(), id, TAXON_NAMESPACE); |
| 330 | 331 |
ImportHelper.setOriginalSource(name, state.getTransactionalSourceReference(), id, TAXON_NAMESPACE); |
| 332 |
taxonBase.setUuid(UUID.fromString(editUuid)); |
|
| 331 | 333 |
handleExampleIdentifiers(taxonBase, id); |
| 332 | 334 |
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| 333 | 335 |
if (!nameAdditionUsed){
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| 334 | 336 |
logger.warn("name_addition not recognized: " + nameAddition + ". ID="+id);
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| 335 | 337 |
name.setAppendedPhrase(nameAddition); |
| 336 | 338 |
} |
| 337 |
String orig = displayString.replace("nomen nudum [Hirschmann, 1951]", "Hirschmann, 1951")
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| 338 |
.replace(" ", " ");
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| 339 |
String nameTitleCache = name.getTitleCache().replace("species group", "group");
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| 340 |
String taxonTitleCache = taxonBase.getTitleCache().replace("species group", "group");
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| 341 |
if (!orig.equals(nameTitleCache) && !orig.equals(name.getFullTitleCache()) && !orig.equals(taxonTitleCache)){
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| 339 |
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| 340 |
if (titleCacheDiffers(state, displayString, name, taxonBase)){
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| 342 | 341 |
String titleCache = taxonBase.getAppendedPhrase() != null ? taxonBase.getTitleCache() : name.getTitleCache(); |
| 343 | 342 |
logger.warn("Displaystring differs from titleCache. ID=" + id + ".\n " + displayString + "\n " + titleCache);
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| 344 | 343 |
} |
| 345 | 344 |
} |
| 346 | 345 |
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| 347 | 346 |
|
| 347 |
/** |
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| 348 |
* @param state |
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| 349 |
* @param displayString |
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| 350 |
* @param name |
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| 351 |
* @param taxonBase |
|
| 352 |
* @return |
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| 353 |
*/ |
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| 354 |
private boolean titleCacheDiffers(EdaphobaseImportState state, String displayString, IZoologicalName name, TaxonBase<?> taxonBase) {
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String orig = displayString.replace("nomen nudum [Hirschmann, 1951]", "Hirschmann, 1951")
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| 356 |
.replace(" ", " ");
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String nameTitleCache = name.getTitleCache().replace("species group", "group");
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| 358 |
String taxonTitleCache = taxonBase.getTitleCache().replace("species group", "group");
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| 359 |
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| 360 |
// if (state.getConfig().isIgnore4nomial() && orig.matches(".* subsp"))
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| 361 |
boolean result = |
|
| 362 |
!orig.equals(nameTitleCache) |
|
| 363 |
&& !orig.equals(name.getFullTitleCache()) |
|
| 364 |
&& !orig.equals(taxonTitleCache); |
|
| 365 |
return result; |
|
| 366 |
} |
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| 367 |
|
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| 348 | 368 |
/** |
| 349 | 369 |
* @param authorStr |
| 350 | 370 |
* @return |
| ... | ... | |
| 436 | 456 |
private void handleExampleIdentifiers(TaxonBase<?> taxonBase, Integer id) {
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| 437 | 457 |
if (idMap.get(id) != null){
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| 438 | 458 |
taxonBase.setUuid(idMap.get(id)); |
| 459 |
logger.warn("Override UUID for specific taxa. ID="+ id + "; uuid="+idMap.get(id) + "; name="+ taxonBase.getName().getTitleCache());
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| 439 | 460 |
} |
| 440 | 461 |
} |
| 441 | 462 |
|
Also available in: Unified diff
ref #5499, ref #6517 latest changes to Edaphobase import (also stable uuids)