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// $Id$
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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.berlinModel.in.validation;
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import java.sql.ResultSet;
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import java.sql.SQLException;
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import org.apache.log4j.Logger;
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import eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportConfigurator;
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import eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportState;
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import eu.etaxonomy.cdm.io.common.IOValidator;
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import eu.etaxonomy.cdm.io.common.Source;
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/**
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* @author a.mueller
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* @created 17.02.2010
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*/
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public class BerlinModelTaxonNameRelationImportValidator implements IOValidator<BerlinModelImportState> {
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private static final Logger logger = Logger.getLogger(BerlinModelTaxonNameRelationImportValidator.class);
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@Override
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public boolean validate(BerlinModelImportState state) {
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boolean result = true;
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BerlinModelImportConfigurator bmiConfig = state.getConfig();
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result &= checkUnrelatedHomotypicSynonyms(bmiConfig);
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return result;
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}
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private boolean checkUnrelatedHomotypicSynonyms(BerlinModelImportConfigurator bmiConfig){
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try {
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boolean result = true;
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Source source = bmiConfig.getSource();
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String strSQL = " SELECT Name.NameId AS NameId1, Name2.NameId AS NameId2, Name.FullNameCache AS NameCache1, Name2.FullNameCache AS NameCache2, dbo.NomStatus.NomStatus AS fromNomStatus, NomStatus_1.NomStatus AS toNomStatus " +
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" FROM RelPTaxon INNER JOIN " +
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" Name ON RelPTaxon.PTNameFk1 = Name.NameId INNER JOIN " +
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" Name AS Name2 ON RelPTaxon.PTNameFk2 = Name2.NameId LEFT OUTER JOIN " +
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" NomStatus AS NomStatus_1 INNER JOIN " +
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" NomStatusRel AS NomStatusRel_1 ON NomStatus_1.NomStatusId = NomStatusRel_1.NomStatusFk ON " +
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" Name2.NameId = NomStatusRel_1.NameFk LEFT OUTER JOIN " +
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" NomStatus INNER JOIN " +
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" NomStatusRel ON NomStatus.NomStatusId = NomStatusRel.NomStatusFk ON Name.NameId = NomStatusRel.NameFk " +
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" WHERE RelPTaxon.RelQualifierFk = 7 AND " +
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" NomStatus.NomStatus <> 'nom. illeg.' AND NomStatus.NomStatus <> 'nom. inval.' AND " +
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" NomStatus.NomStatus <> 'nom. altern.' AND NomStatus.NomStatus <> 'nom. nud.' AND " +
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" NomStatus.NomStatus <> 'nom. rej.' AND NomStatus.NomStatus <> 'nom. rej. prop.' AND " +
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" RelPTaxon.PTNameFk1 NOT IN " +
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" (SELECT NameFk1 " +
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" FROM RelName " +
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" WHERE RelNameQualifierFk = 1 OR RelNameQualifierFk = 3 " +
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" UNION " +
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" SELECT NameFk2 " +
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" FROM RelName AS RelName2 " +
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" WHERE RelNameQualifierFk = 1 OR RelNameQualifierFk = 3)";
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ResultSet rs = source.getResultSet(strSQL);
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boolean firstRow = true;
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int i = 0;
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while (rs.next()){
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i++;
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if (firstRow){
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System.out.println("==================================================================================================");
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logger.warn("There are names that have a homotypic relationship as taxa but no 'is basionym' or 'is replaced synonym' relationship or a status not requiring a basionym/repl.syn.");
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System.out.println("===================================================================================================");
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}
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int nameId1 = rs.getInt("NameId1");
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String nameCache1 = rs.getString("NameCache1");
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int nameId2 = rs.getInt("NameId2");
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String nameCache2 = rs.getString("NameCache2");
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String status1 = rs.getString("fromNomStatus");
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String status2 = rs.getString("toNomStatus");
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System.out.println(
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"NameId1:" + nameId1 + "\n NameCache1: " + nameCache1 + "\n status1: " + status1 +
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"\n NameId2: " + nameId2 + "\n NameCache2: " + nameCache2 + "\n status2: " + status2) ;
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result = firstRow = false;
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}
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if (i > 0){
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System.out.println(" ");
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}
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return result;
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} catch (SQLException e) {
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e.printStackTrace();
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return false;
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}
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}
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}
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