Project

General

Profile

« Previous | Next » 

Revision 717551c8

Added by Andreas Kohlbecker about 12 years ago

deleting it

View differences:

.gitattributes
1331 1331 
cdm-pesi/src/main/resources/log4j.properties -text
1332 1332 
cdm-pesi/src/test/java/eu/etaxonomy/cdm/io/common/TestConnection.java -text
1333 1333 
cdm-pesi/src/test/java/eu/etaxonomy/cdm/io/erms/ermsErrors.txt -text
1334 
vibrant-webapp/LICENSE.TXT -text
1335 
vibrant-webapp/README.TXT -text
1336 
vibrant-webapp/ide/eclipse/cdmlib-remote[!!-~]-[!!-~]remote[!!-~]debug.launch -text svneol=unset#application/xml
1337 
vibrant-webapp/ide/eclipse/cdmserver[!!-~]-[!!-~]profile.launch -text
1338 
vibrant-webapp/ide/eclipse/cdmserver[!!-~]-[!!-~]run.launch -text svneol=unset#application/xml
1339 
vibrant-webapp/pom.xml -text
1340 
vibrant-webapp/src/main/java/eu/etaxonomy/cdm/remote/config/AbstractWebApplicationConfigurer.java -text
1341 
vibrant-webapp/src/main/java/eu/etaxonomy/cdm/remote/config/DataSourceConfigurer.java -text
1342 
vibrant-webapp/src/main/java/eu/etaxonomy/cdm/remote/config/LoggingConfigurer.java -text
1343 
vibrant-webapp/src/main/resources/log4j.properties -text
1344 
vibrant-webapp/src/main/webapp/WEB-INF/applicationContext.views.xml -text
1345 
vibrant-webapp/src/main/webapp/WEB-INF/applicationContext.xml -text
1346 
vibrant-webapp/src/main/webapp/WEB-INF/cdmlib-remote-servlet.xml -text
1347 
vibrant-webapp/src/main/webapp/WEB-INF/datasources/configurable.xml -text
1348 
vibrant-webapp/src/main/webapp/WEB-INF/datasources/datasources-local.xml -text
1349 
vibrant-webapp/src/main/webapp/WEB-INF/datasources/empty-default-datasource.xml -text
1350 
vibrant-webapp/src/main/webapp/WEB-INF/datasources/p6spy.xml -text
1351 
vibrant-webapp/src/main/webapp/WEB-INF/datasources/routing-datasource.xml -text
1352 
vibrant-webapp/src/main/webapp/WEB-INF/json-views.xml -text
1353 
vibrant-webapp/src/main/webapp/WEB-INF/jsp/index.jsp -text
1354 
vibrant-webapp/src/main/webapp/WEB-INF/oai-views.xml -text
1355 
vibrant-webapp/src/main/webapp/WEB-INF/web.xml -text
1356 
vibrant-webapp/src/main/webapp/WEB-INF/xml-views.xml -text
1357 
vibrant-webapp/src/main/webapp/human.xsl -text
1358 
vibrant-webapp/src/main/webapp/oai2.xsl -text
1359 
vibrant-webapp/src/test/java/eu/etaxonomy/AppTest.java -text
1360 
vibrant-webapp/src/test/resources/log4j.properties -text
.gitignore
47 47 
/eu.etaxonomy.cdm.model.name.TaxonNameBase
48 48 
/eu.etaxonomy.cdm.model.taxon.TaxonBase
49 49 
/target
50 
vibrant-webapp/.classpath
51 
vibrant-webapp/.project
52 
vibrant-webapp/.settings
53 
vibrant-webapp/target
vibrant-webapp/LICENSE.TXT
1 
The contents of this file are subject to the Mozilla Public License
2 
Version 1.1 (the "License"); you may not use this file except in
3 
compliance with the License. You may obtain a copy of the License at
4 
http://www.mozilla.org/MPL/
5 

  		




  6
  
  
    
Software distributed under the License is distributed on an "AS IS"


  		




  7
  
  
    
basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the


  		




  8
  
  
    
License for the specific language governing rights and limitations


  		




  9
  
  
    
under the License.


  		












  

    
      vibrant-webapp/README.TXT
    
  





  1
  
  
    
The project uses Maven2 and AspectJ.


  		




  2
  
  
    

  		




  3
  
  
    
Please see http://dev.e-taxonomy.eu/trac/wiki/CdmLibrary for details on installation and usage


  		




  4
  
  
    

  		




  5
  
  
    
***Deploying to Application Server***


  		




  6
  
  
    
The POM contains deployment plugins for TOMCAT and also JETTY.


  		




  7
  
  
    

  		




  8
  
  
    
- Production mode: TOMCAT


  		




  9
  
  
    
  Install tomcat,  configure and run it (with bin/startup.sh) 


  		




  10
  
  
    
  Configuration: Deployment information is in web.xml and server info in your personal settings.xml (referenced form pom)


  		




  11
  
  
    
  Deploy: mvn tomcat:deploy  


  		




  12
  
  
    
  Undeploy: mvn tomcat:undeploy  


  		




  13
  
  
    
  Debugging: http://www.mojavelinux.com/blog/archives/2007/03/remote_debugging_with_jetty/


  		




  14
  
  
    
  


  		




  15
  
  
    
- Development mode: JETTY 


  		




  16
  
  
    
  Configuration: in pom.xml the jetty plugin. Configured for port 8080


  		




  17
  
  
    
  Start: In the project folder simply execute "mvn jetty:run"  


  		




  18
  
  
    
  Stop: Ctrl-C  


  		




  19
  
  
    
  Debugging: http://www.mojavelinux.com/blog/archives/2007/03/remote_debugging_with_jetty/


  		












  

    
      vibrant-webapp/ide/eclipse/cdmlib-remote - remote debug.launch	
    
  





  1
  
  
    
<?xml version="1.0" encoding="UTF-8" standalone="no"?>


  		




  2
  
  
    
<launchConfiguration type="org.eclipse.jdt.launching.remoteJavaApplication">


  		




  3
  
  
    
<listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_PATHS">


  		




  4
  
  
    
<listEntry value="/cdmlib-remote"/>


  		




  5
  
  
    
</listAttribute>


  		




  6
  
  
    
<listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_TYPES">


  		




  7
  
  
    
<listEntry value="4"/>


  		




  8
  
  
    
</listAttribute>


  		




  9
  
  
    
<stringAttribute key="org.eclipse.debug.core.source_locator_id" value="org.eclipse.jdt.launching.sourceLocator.JavaSourceLookupDirector"/>


  		




  10
  
  
    
<stringAttribute key="org.eclipse.debug.core.source_locator_memento" value="&lt;?xml version=&quot;1.0&quot; encoding=&quot;UTF-8&quot; standalone=&quot;no&quot;?&gt;&#10;&lt;sourceLookupDirector&gt;&#10;&lt;sourceContainers duplicates=&quot;false&quot;&gt;&#10;&lt;container memento=&quot;&amp;lt;?xml version=&amp;quot;1.0&amp;quot; encoding=&amp;quot;UTF-8&amp;quot; standalone=&amp;quot;no&amp;quot;?&amp;gt;&amp;#10;&amp;lt;classpathVariable path=&amp;quot;M2_REPO/org/springframework/org.springframework.web.servlet/3.0.4.RELEASE/org.springframework.web.servlet-3.0.4.RELEASE-sources.jar&amp;quot;/&amp;gt;&amp;#10;&quot; typeId=&quot;org.eclipse.jdt.launching.sourceContainer.classpathVariable&quot;/&gt;&#10;&lt;container memento=&quot;&amp;lt;?xml version=&amp;quot;1.0&amp;quot; encoding=&amp;quot;UTF-8&amp;quot; standalone=&amp;quot;no&amp;quot;?&amp;gt;&amp;#10;&amp;lt;javaProject name=&amp;quot;cdmlib-commons&amp;quot;/&amp;gt;&amp;#10;&quot; typeId=&quot;org.eclipse.jdt.launching.sourceContainer.javaProject&quot;/&gt;&#10;&lt;container memento=&quot;&amp;lt;?xml version=&amp;quot;1.0&amp;quot; encoding=&amp;quot;UTF-8&amp;quot; standalone=&amp;quot;no&amp;quot;?&amp;gt;&amp;#10;&amp;lt;javaProject name=&amp;quot;cdmlib-model&amp;quot;/&amp;gt;&amp;#10;&quot; typeId=&quot;org.eclipse.jdt.launching.sourceContainer.javaProject&quot;/&gt;&#10;&lt;container memento=&quot;&amp;lt;?xml version=&amp;quot;1.0&amp;quot; encoding=&amp;quot;UTF-8&amp;quot; standalone=&amp;quot;no&amp;quot;?&amp;gt;&amp;#10;&amp;lt;javaProject name=&amp;quot;cdmlib-persistence&amp;quot;/&amp;gt;&amp;#10;&quot; typeId=&quot;org.eclipse.jdt.launching.sourceContainer.javaProject&quot;/&gt;&#10;&lt;container memento=&quot;&amp;lt;?xml version=&amp;quot;1.0&amp;quot; encoding=&amp;quot;UTF-8&amp;quot; standalone=&amp;quot;no&amp;quot;?&amp;gt;&amp;#10;&amp;lt;javaProject name=&amp;quot;cdmlib-remote&amp;quot;/&amp;gt;&amp;#10;&quot; typeId=&quot;org.eclipse.jdt.launching.sourceContainer.javaProject&quot;/&gt;&#10;&lt;container memento=&quot;&amp;lt;?xml version=&amp;quot;1.0&amp;quot; encoding=&amp;quot;UTF-8&amp;quot; standalone=&amp;quot;no&amp;quot;?&amp;gt;&amp;#10;&amp;lt;javaProject name=&amp;quot;cdmlib-services&amp;quot;/&amp;gt;&amp;#10;&quot; typeId=&quot;org.eclipse.jdt.launching.sourceContainer.javaProject&quot;/&gt;&#10;&lt;container memento=&quot;&amp;lt;?xml version=&amp;quot;1.0&amp;quot; encoding=&amp;quot;UTF-8&amp;quot; standalone=&amp;quot;no&amp;quot;?&amp;gt;&amp;#10;&amp;lt;classpathVariable path=&amp;quot;M2_REPO/org/springframework/org.springframework.beans/3.0.4.RELEASE/org.springframework.beans-3.0.4.RELEASE-sources.jar&amp;quot;/&amp;gt;&amp;#10;&quot; typeId=&quot;org.eclipse.jdt.launching.sourceContainer.classpathVariable&quot;/&gt;&#10;&lt;container memento=&quot;&amp;lt;?xml version=&amp;quot;1.0&amp;quot; encoding=&amp;quot;UTF-8&amp;quot; standalone=&amp;quot;no&amp;quot;?&amp;gt;&amp;#10;&amp;lt;default/&amp;gt;&amp;#10;&quot; typeId=&quot;org.eclipse.debug.core.containerType.default&quot;/&gt;&#10;&lt;/sourceContainers&gt;&#10;&lt;/sourceLookupDirector&gt;&#10;"/>


  		




  11
  
  
    
<booleanAttribute key="org.eclipse.jdt.launching.ALLOW_TERMINATE" value="true"/>


  		




  12
  
  
    
<stringAttribute key="org.eclipse.jdt.launching.CLASSPATH_PROVIDER" value="org.maven.ide.eclipse.launchconfig.classpathProvider"/>


  		




  13
  
  
    
<mapAttribute key="org.eclipse.jdt.launching.CONNECT_MAP">


  		




  14
  
  
    
<mapEntry key="hostname" value="localhost"/>


  		




  15
  
  
    
<mapEntry key="port" value="8000"/>


  		




  16
  
  
    
<mapEntry key="timeout" value="20000"/>


  		




  17
  
  
    
</mapAttribute>


  		




  18
  
  
    
<stringAttribute key="org.eclipse.jdt.launching.PROJECT_ATTR" value="cdmlib-remote"/>


  		




  19
  
  
    
<stringAttribute key="org.eclipse.jdt.launching.SOURCE_PATH_PROVIDER" value="org.maven.ide.eclipse.launchconfig.sourcepathProvider"/>


  		




  20
  
  
    
<stringAttribute key="org.eclipse.jdt.launching.VM_CONNECTOR_ID" value="org.eclipse.jdt.launching.socketAttachConnector"/>


  		




  21
  
  
    
</launchConfiguration>


  		












  

    
      vibrant-webapp/ide/eclipse/cdmserver - profile.launch	
    
  





  1
  
  
    
<?xml version="1.0" encoding="UTF-8" standalone="no"?>


  		




  2
  
  
    
<launchConfiguration type="RunJettyRunWebApp">


  		




  3
  
  
    
<stringAttribute key="bad_container_name" value="\cdmlib-remote\ide\eclipse\c"/>


  		




  4
  
  
    
<stringAttribute key="org.eclipse.debug.core.source_locator_id" value="org.eclipse.jdt.launching.sourceLocator.JavaSourceLookupDirector"/>


  		




  5
  
  
    
<stringAttribute key="org.eclipse.debug.core.source_locator_memento" value="&lt;?xml version=&quot;1.0&quot; encoding=&quot;UTF-8&quot; standalone=&quot;no&quot;?&gt;&#13;&#10;&lt;sourceLookupDirector&gt;&#13;&#10;&lt;sourceContainers duplicates=&quot;false&quot;&gt;&#13;&#10;&lt;container memento=&quot;&amp;lt;?xml version=&amp;quot;1.0&amp;quot; encoding=&amp;quot;UTF-8&amp;quot; standalone=&amp;quot;no&amp;quot;?&amp;gt;&amp;#13;&amp;#10;&amp;lt;directory nest=&amp;quot;false&amp;quot; path=&amp;quot;D:\_lib\java\jdk1.6_b3.src\j2se\src\share\classes&amp;quot;/&amp;gt;&amp;#13;&amp;#10;&quot; typeId=&quot;org.eclipse.debug.core.containerType.directory&quot;/&gt;&#13;&#10;&lt;container memento=&quot;&amp;lt;?xml version=&amp;quot;1.0&amp;quot; encoding=&amp;quot;UTF-8&amp;quot; standalone=&amp;quot;no&amp;quot;?&amp;gt;&amp;#13;&amp;#10;&amp;lt;directory nest=&amp;quot;false&amp;quot; path=&amp;quot;D:\_lib\java\jdk1.6_b3.src\j2se\src\windows\classes&amp;quot;/&amp;gt;&amp;#13;&amp;#10;&quot; typeId=&quot;org.eclipse.debug.core.containerType.directory&quot;/&gt;&#13;&#10;&lt;container memento=&quot;&amp;lt;?xml version=&amp;quot;1.0&amp;quot; encoding=&amp;quot;UTF-8&amp;quot; standalone=&amp;quot;no&amp;quot;?&amp;gt;&amp;#13;&amp;#10;&amp;lt;default/&amp;gt;&amp;#13;&amp;#10;&quot; typeId=&quot;org.eclipse.debug.core.containerType.default&quot;/&gt;&#13;&#10;&lt;/sourceContainers&gt;&#13;&#10;&lt;/sourceLookupDirector&gt;&#13;&#10;"/>


  		




  6
  
  
    
<listAttribute key="org.eclipse.debug.ui.favoriteGroups">


  		




  7
  
  
    
<listEntry value="org.eclipse.debug.ui.launchGroup.debug"/>


  		




  8
  
  
    
<listEntry value="org.eclipse.debug.ui.launchGroup.run"/>


  		




  9
  
  
    
</listAttribute>


  		




  10
  
  
    
<stringAttribute key="org.eclipse.jdt.launching.CLASSPATH_PROVIDER" value="RunJettyRunWebAppClassPathProvider"/>


  		




  11
  
  
    
<stringAttribute key="org.eclipse.jdt.launching.MAIN_TYPE" value="runjettyrun.Bootstrap"/>


  		




  12
  
  
    
<stringAttribute key="org.eclipse.jdt.launching.PROJECT_ATTR" value="cdmlib-remote-webapp"/>


  		




  13
  
  
    
<stringAttribute key="org.eclipse.jdt.launching.VM_ARGUMENTS" value="-Xmx1024M&#13;&#10;-Dlog4j.configDebug=true&#13;&#10;-agentlib:yjpagent&#13;&#10;-Dcdm.datasource=cyprus"/>


  		




  14
  
  
    
<stringAttribute key="run_jetty_run.CONTEXT_ATTR" value="/"/>


  		




  15
  
  
    
<booleanAttribute key="run_jetty_run.ENABLE_JNDI_ATTR" value="false"/>


  		




  16
  
  
    
<booleanAttribute key="run_jetty_run.ENABLE_NEED_CLIENT_AUTH_ATTR" value="false"/>


  		




  17
  
  
    
<booleanAttribute key="run_jetty_run.ENABLE_PARENT_LOADER_PRIORITY_ATTR" value="true"/>


  		




  18
  
  
    
<booleanAttribute key="run_jetty_run.ENABLE_SCANNER_ATTR" value="true"/>


  		




  19
  
  
    
<booleanAttribute key="run_jetty_run.ENABLE_SCANNER_SCAN_WEBINF_ATTR" value="true"/>


  		




  20
  
  
    
<booleanAttribute key="run_jetty_run.ENABLE_SSL_ATTR" value="false"/>


  		




  21
  
  
    
<stringAttribute key="run_jetty_run.EXCLUDE_CLASSPATH_ATTR" value=""/>


  		




  22
  
  
    
<stringAttribute key="run_jetty_run.KEYSTORE_ATTR" value=""/>


  		




  23
  
  
    
<stringAttribute key="run_jetty_run.KEY_PWD_ATTR" value=""/>


  		




  24
  
  
    
<stringAttribute key="run_jetty_run.PORT_ATTR" value="8080"/>


  		




  25
  
  
    
<stringAttribute key="run_jetty_run.PWD_ATTR" value=""/>


  		




  26
  
  
    
<stringAttribute key="run_jetty_run.SCANINTERVALSECONDS_ATTR" value=""/>


  		




  27
  
  
    
<booleanAttribute key="run_jetty_run.SHOW_ADVANCE_ATTR" value="false"/>


  		




  28
  
  
    
<stringAttribute key="run_jetty_run.SSL_PORT_ATTR" value=""/>


  		




  29
  
  
    
<stringAttribute key="run_jetty_run.WEBAPPDIR_ATTR" value="src/main/webapp"/>


  		




  30
  
  
    
</launchConfiguration>


  		












  

    
      vibrant-webapp/ide/eclipse/cdmserver - run.launch	
    
  





  1
  
  
    
<?xml version="1.0" encoding="UTF-8" standalone="no"?>


  		




  2
  
  
    
<launchConfiguration type="RunJettyRunWebApp">


  		




  3
  
  
    
<booleanAttribute key="org.eclipse.debug.core.appendEnvironmentVariables" value="false"/>


  		




  4
  
  
    
<stringAttribute key="org.eclipse.debug.core.source_locator_id" value="org.eclipse.jdt.launching.sourceLocator.JavaSourceLookupDirector"/>


  		




  5
  
  
    
<stringAttribute key="org.eclipse.debug.core.source_locator_memento" value="&lt;?xml version=&quot;1.0&quot; encoding=&quot;UTF-8&quot; standalone=&quot;no&quot;?&gt;&#10;&lt;sourceLookupDirector&gt;&#10;&lt;sourceContainers duplicates=&quot;false&quot;&gt;&#10;&lt;container memento=&quot;&amp;lt;?xml version=&amp;quot;1.0&amp;quot; encoding=&amp;quot;UTF-8&amp;quot; standalone=&amp;quot;no&amp;quot;?&amp;gt;&amp;#10;&amp;lt;archive detectRoot=&amp;quot;true&amp;quot; path=&amp;quot;C:\Programme\Java\jdk1.6.0_11\src.zip&amp;quot;/&amp;gt;&amp;#10;&quot; typeId=&quot;org.eclipse.debug.core.containerType.externalArchive&quot;/&gt;&#10;&lt;container memento=&quot;&amp;lt;?xml version=&amp;quot;1.0&amp;quot; encoding=&amp;quot;UTF-8&amp;quot; standalone=&amp;quot;no&amp;quot;?&amp;gt;&amp;#10;&amp;lt;directory nest=&amp;quot;false&amp;quot; path=&amp;quot;/Applications/eclipse-helios/Eclipse.app/Contents/MacOS/D:\_lib\java\jdk1.6_b3.src\j2se\src\share\classes&amp;quot;/&amp;gt;&amp;#10;&quot; typeId=&quot;org.eclipse.debug.core.containerType.directory&quot;/&gt;&#10;&lt;container memento=&quot;&amp;lt;?xml version=&amp;quot;1.0&amp;quot; encoding=&amp;quot;UTF-8&amp;quot; standalone=&amp;quot;no&amp;quot;?&amp;gt;&amp;#10;&amp;lt;directory nest=&amp;quot;false&amp;quot; path=&amp;quot;/Applications/eclipse-helios/Eclipse.app/Contents/MacOS/D:\_lib\java\jdk1.6_b3.src\j2se\src\windows\classes&amp;quot;/&amp;gt;&amp;#10;&quot; typeId=&quot;org.eclipse.debug.core.containerType.directory&quot;/&gt;&#10;&lt;container memento=&quot;&amp;lt;?xml version=&amp;quot;1.0&amp;quot; encoding=&amp;quot;UTF-8&amp;quot; standalone=&amp;quot;no&amp;quot;?&amp;gt;&amp;#10;&amp;lt;classpathVariable path=&amp;quot;M2_REPO/org/mortbay/jetty/jetty/6.1.16/jetty-6.1.16-sources.jar&amp;quot;/&amp;gt;&amp;#10;&quot; typeId=&quot;org.eclipse.jdt.launching.sourceContainer.classpathVariable&quot;/&gt;&#10;&lt;container memento=&quot;&amp;lt;?xml version=&amp;quot;1.0&amp;quot; encoding=&amp;quot;UTF-8&amp;quot; standalone=&amp;quot;no&amp;quot;?&amp;gt;&amp;#10;&amp;lt;default/&amp;gt;&amp;#10;&quot; typeId=&quot;org.eclipse.debug.core.containerType.default&quot;/&gt;&#10;&lt;/sourceContainers&gt;&#10;&lt;/sourceLookupDirector&gt;&#10;"/>


  		




  6
  
  
    
<listAttribute key="org.eclipse.debug.ui.favoriteGroups">


  		




  7
  
  
    
<listEntry value="org.eclipse.debug.ui.launchGroup.debug"/>


  		




  8
  
  
    
<listEntry value="org.eclipse.debug.ui.launchGroup.run"/>


  		




  9
  
  
    
</listAttribute>


  		




  10
  
  
    
<stringAttribute key="org.eclipse.jdt.launching.CLASSPATH_PROVIDER" value="RunJettyRunWebAppClassPathProvider"/>


  		




  11
  
  
    
<stringAttribute key="org.eclipse.jdt.launching.MAIN_TYPE" value="runjettyrun.Bootstrap"/>


  		




  12
  
  
    
<stringAttribute key="org.eclipse.jdt.launching.PROJECT_ATTR" value="cdmlib-remote-webapp"/>


  		




  13
  
  
    
<stringAttribute key="org.eclipse.jdt.launching.VM_ARGUMENTS" value="-Xmx1024M&#13;&#10;-Dlog4j.configDebug=false&#13;&#10;-Dcdm.datasource=cichorieae&#10;-Dorg.mortbay.jetty.webapp.parentLoaderPriority=true"/>


  		




  14
  
  
    
<stringAttribute key="run_jetty_run.CONTEXT_ATTR" value="/"/>


  		




  15
  
  
    
<booleanAttribute key="run_jetty_run.ENABLE_JNDI_ATTR" value="false"/>


  		




  16
  
  
    
<booleanAttribute key="run_jetty_run.ENABLE_MAVEN_TEST_CLASSES_ATTR" value="true"/>


  		




  17
  
  
    
<booleanAttribute key="run_jetty_run.ENABLE_NEED_CLIENT_AUTH_ATTR" value="false"/>


  		




  18
  
  
    
<booleanAttribute key="run_jetty_run.ENABLE_PARENT_LOADER_PRIORITY_ATTR" value="true"/>


  		




  19
  
  
    
<booleanAttribute key="run_jetty_run.ENABLE_SCANNER_ATTR" value="false"/>


  		




  20
  
  
    
<booleanAttribute key="run_jetty_run.ENABLE_SCANNER_SCAN_WEBINF_ATTR" value="true"/>


  		




  21
  
  
    
<booleanAttribute key="run_jetty_run.ENABLE_SSL_ATTR" value="false"/>


  		




  22
  
  
    
<stringAttribute key="run_jetty_run.EXCLUDE_CLASSPATH_ATTR" value=""/>


  		




  23
  
  
    
<stringAttribute key="run_jetty_run.KEYSTORE_ATTR" value=""/>


  		




  24
  
  
    
<stringAttribute key="run_jetty_run.KEY_PWD_ATTR" value=""/>


  		




  25
  
  
    
<stringAttribute key="run_jetty_run.PORT_ATTR" value="8080"/>


  		




  26
  
  
    
<stringAttribute key="run_jetty_run.PWD_ATTR" value=""/>


  		




  27
  
  
    
<stringAttribute key="run_jetty_run.SCANINTERVALSECONDS_ATTR" value=""/>


  		




  28
  
  
    
<booleanAttribute key="run_jetty_run.SHOW_ADVANCE_ATTR" value="false"/>


  		




  29
  
  
    
<stringAttribute key="run_jetty_run.SSL_PORT_ATTR" value=""/>


  		




  30
  
  
    
<stringAttribute key="run_jetty_run.WEBAPPDIR_ATTR" value="src/main/webapp"/>


  		




  31
  
  
    
</launchConfiguration>


  		












  

    
      vibrant-webapp/pom.xml
    
  





  1
  
  
    
<?xml version="1.0" encoding="UTF-8"?>


  		




  2
  
  
    
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">


  		




  3
  
  
    
  <modelVersion>4.0.0</modelVersion>


  		




  4
  
  
    
  <parent>


  		




  5
  
  
    
    <artifactId>cdmlib-parent</artifactId>


  		




  6
  
  
    
    <groupId>eu.etaxonomy</groupId>


  		




  7
  
  
    
    <version>3.0.10-SNAPSHOT</version>


  		




  8
  
  
    
	<relativePath>../pom.xml</relativePath>


  		




  9
  
  
    
  </parent>


  		




  10
  
  
    
  


  		




  11
  
  
    
  <groupId>eu.etaxonomy</groupId>


  		




  12
  
  
    
  <artifactId>cdmlib-remote-webapp</artifactId>


  		




  13
  
  
    
  <name>CDM Remote Webapp</name>


  		




  14
  
  
    
  <packaging>war</packaging>


  		




  15
  
  
    
  


  		




  16
  
  
    
  <scm>


  		




  17
  
  
    
    <connection>


  		




  18
  
  
    
      scm:svn:http://dev.e-taxonomy.eu/svn/trunk/cdmlib/cdmlib-remote/


  		




  19
  
  
    
    </connection>


  		




  20
  
  
    
    <developerConnection>


  		




  21
  
  
    
      scm:svn:https://dev.e-taxonomy.eu/svn/trunk/cdmlib/cdmlib-remote/


  		




  22
  
  
    
    </developerConnection>


  		




  23
  
  
    
    <url>


  		




  24
  
  
    
      http://dev.e-taxonomy.eu/trac/browser/trunk/cdmlib/cdmlib-remote/


  		




  25
  
  
    
    </url>


  		




  26
  
  
    
  </scm>


  		




  27
  
  
    
  


  		




  28
  
  
    
  <dependencies>


  		




  29
  
  
    
      <dependency>


  		




  30
  
  
    
        <groupId>eu.etaxonomy</groupId>


  		




  31
  
  
    
        <artifactId>cdmlib-ext</artifactId>


  		




  32
  
  
    
      </dependency>


  		




  33
  
  
    
      <dependency>


  		




  34
  
  
    
        <groupId>eu.etaxonomy</groupId>


  		




  35
  
  
    
        <artifactId>cdmlib-persistence</artifactId>


  		




  36
  
  
    
      </dependency>


  		




  37
  
  
    
      <dependency>


  		




  38
  
  
    
        <groupId>eu.etaxonomy</groupId>


  		




  39
  
  
    
        <artifactId>cdmlib-model</artifactId>


  		




  40
  
  
    
      </dependency>


  		




  41
  
  
    
      <dependency>


  		




  42
  
  
    
        <groupId>eu.etaxonomy</groupId>


  		




  43
  
  
    
        <artifactId>cdmlib-services</artifactId>


  		




  44
  
  
    
      </dependency>


  		




  45
  
  
    
      <dependency>


  		




  46
  
  
    
        <groupId>eu.etaxonomy</groupId>


  		




  47
  
  
    
        <artifactId>cdmlib-io</artifactId>


  		




  48
  
  
    
      </dependency>


  		




  49
  
  
    
    <dependency>


  		




  50
  
  
    
      <groupId>eu.etaxonomy</groupId>


  		




  51
  
  
    
      <artifactId>cdmlib-remote</artifactId>


  		




  52
  
  
    
    </dependency>


  		




  53
  
  
    
      <dependency>


  		




  54
  
  
    
        <groupId>javax.servlet</groupId>


  		




  55
  
  
    
        <artifactId>servlet-api</artifactId>


  		




  56
  
  
    
        <scope>provided</scope>


  		




  57
  
  
    
      </dependency>


  		




  58
  
  
    
      <dependency>


  		




  59
  
  
    
        <groupId>org.springframework</groupId>


  		




  60
  
  
    
        <artifactId>org.springframework.web</artifactId>


  		




  61
  
  
    
      </dependency>


  		




  62
  
  
    
      <dependency>


  		




  63
  
  
    
        <groupId>org.springframework</groupId>


  		




  64
  
  
    
        <artifactId>org.springframework.context.support</artifactId>


  		




  65
  
  
    
      </dependency>


  		




  66
  
  
    
      <dependency>


  		




  67
  
  
    
        <groupId>org.springframework</groupId>


  		




  68
  
  
    
        <artifactId>org.springframework.web.servlet</artifactId>


  		




  69
  
  
    
      </dependency>


  		




  70
  
  
    
      <dependency>


  		




  71
  
  
    
        <groupId>org.springmodules</groupId>


  		




  72
  
  
    
        <artifactId>spring-modules-cache</artifactId>


  		




  73
  
  
    
        <version>0.7</version>


  		




  74
  
  
    
        <exclusions>


  		




  75
  
  
    
          <exclusion>


  		




  76
  
  
    
            <groupId>org.springframework</groupId>


  		




  77
  
  
    
            <artifactId>spring</artifactId>


  		




  78
  
  
    
          </exclusion>


  		




  79
  
  
    
          <exclusion>


  		




  80
  
  
    
            <groupId>org.springframework</groupId>


  		




  81
  
  
    
            <artifactId>spring-mock</artifactId>


  		




  82
  
  
    
          </exclusion>


  		




  83
  
  
    
        </exclusions>


  		




  84
  
  
    
      </dependency>


  		




  85
  
  
    
      <dependency>


  		




  86
  
  
    
        <groupId>com.ibm.lsid</groupId>


  		




  87
  
  
    
        <artifactId>lsid-server</artifactId>


  		




  88
  
  
    
      </dependency>


  		




  89
  
  
    
      <dependency>


  		




  90
  
  
    
        <groupId>com.ibm.lsid</groupId>


  		




  91
  
  
    
        <artifactId>lsid-client</artifactId>


  		




  92
  
  
    
      </dependency>


  		




  93
  
  
    
      <dependency>


  		




  94
  
  
    
        <groupId>org.easymock</groupId>


  		




  95
  
  
    
        <artifactId>easymock</artifactId>


  		




  96
  
  
    
      </dependency>


  		




  97
  
  
    
      <dependency>


  		




  98
  
  
    
        <groupId>xmlunit</groupId>


  		




  99
  
  
    
        <artifactId>xmlunit</artifactId>


  		




  100
  
  
    
      </dependency>


  		




  101
  
  
    
      <dependency>


  		




  102
  
  
    
        <groupId>org.springframework</groupId>


  		




  103
  
  
    
        <artifactId>org.springframework.test</artifactId>


  		




  104
  
  
    
      </dependency>


  		




  105
  
  
    
      <dependency>


  		




  106
  
  
    
        <groupId>net.sf.dozer</groupId>


  		




  107
  
  
    
        <artifactId>dozer</artifactId>


  		




  108
  
  
    
      </dependency>


  		




  109
  
  
    
      <dependency>


  		




  110
  
  
    
        <groupId>joda-time</groupId>


  		




  111
  
  
    
        <artifactId>joda-time</artifactId>    


  		




  112
  
  
    
      </dependency>


  		




  113
  
  
    
      <dependency>


  		




  114
  
  
    
        <groupId>org.hibernate</groupId>


  		




  115
  
  
    
        <artifactId>hibernate-cglib-repack</artifactId>


  		




  116
  
  
    
      </dependency>


  		




  117
  
  
    
      <dependency>


  		




  118
  
  
    
        <groupId>org.hibernate</groupId>


  		




  119
  
  
    
        <artifactId>hibernate-core</artifactId>


  		




  120
  
  
    
      </dependency>


  		




  121
  
  
    
      <dependency>


  		




  122
  
  
    
        <groupId>org.hibernate</groupId>


  		




  123
  
  
    
        <artifactId>hibernate-ehcache</artifactId>


  		




  124
  
  
    
      </dependency>


  		




  125
  
  
    
      <dependency>


  		




  126
  
  
    
        <groupId>commons-io</groupId>


  		




  127
  
  
    
        <artifactId>commons-io</artifactId>


  		




  128
  
  
    
      </dependency>


  		




  129
  
  
    
      <!-- JsonView -->


  		




  130
  
  
    
      <dependency>


  		




  131
  
  
    
        <groupId>net.sf.json-lib</groupId>


  		




  132
  
  
    
        <artifactId>json-lib</artifactId>


  		




  133
  
  
    
        <version>2.2.3</version>


  		




  134
  
  
    
        <classifier>jdk15</classifier>   


  		




  135
  
  
    
      </dependency>


  		




  136
  
  
    
      <dependency>


  		




  137
  
  
    
        <groupId>org.springframework</groupId>


  		




  138
  
  
    
        <artifactId>org.springframework.oxm</artifactId>


  		




  139
  
  
    
        <version>${spring.version}</version>


  		




  140
  
  
    
      </dependency>


  		




  141
  
  
    
      


  		




  142
  
  
    
      <!-- XmlView -->


  		




  143
  
  
    
      <dependency>


  		




  144
  
  
    
        <groupId>com.thoughtworks.xstream</groupId>


  		




  145
  
  
    
        <artifactId>xstream</artifactId>


  		




  146
  
  
    
      </dependency>


  		




  147
  
  
    
      <dependency>


  		




  148
  
  
    
        <groupId>xpp3</groupId>


  		




  149
  
  
    
        <artifactId>xpp3</artifactId>


  		




  150
  
  
    
      </dependency>


  		




  151
  
  
    
      <dependency>


  		




  152
  
  
    
        <groupId>stax</groupId>


  		




  153
  
  
    
        <artifactId>stax</artifactId>


  		




  154
  
  
    
      </dependency>


  		




  155
  
  
    
      


  		




  156
  
  
    
      <!-- JSP TAG LIBS -->


  		




  157
  
  
    
      <dependency>


  		




  158
  
  
    
        <groupId>taglibs</groupId>


  		




  159
  
  
    
        <artifactId>standard</artifactId>


  		




  160
  
  
    
        <version>1.1.2</version>


  		




  161
  
  
    
      </dependency>


  		




  162
  
  
    
      <dependency>


  		




  163
  
  
    
        <groupId>taglibs</groupId>


  		




  164
  
  
    
        <artifactId>x</artifactId>


  		




  165
  
  
    
        <version>1.1.2</version>


  		




  166
  
  
    
        <type>tld</type>


  		




  167
  
  
    
      </dependency>


  		




  168
  
  
    
      <!--  Connection Pooling  -->


  		




  169
  
  
    
      <dependency> 


  		




  170
  
  
    
        <groupId>org.hibernate</groupId> 


  		




  171
  
  
    
        <artifactId>hibernate-c3p0</artifactId>         


  		




  172
  
  
    
      </dependency>


  		




  173
  
  
    
      


  		




  174
  
  
    
      <!--  SQL Profiling  -->


  		




  175
  
  
    
      <dependency>


  		




  176
  
  
    
        <groupId>p6spy</groupId>


  		




  177
  
  
    
        <artifactId>p6spy</artifactId>


  		




  178
  
  
    
        <version>1.3</version>


  		




  179
  
  
    
      </dependency>


  		




  180
  
  
    
    


  		




  181
  
  
    
    <dependency>


  		




  182
  
  
    
      <groupId>junit</groupId>


  		




  183
  
  
    
      <artifactId>junit</artifactId>


  		




  184
  
  
    
      <version>3.8.1</version>


  		




  185
  
  
    
      <scope>test</scope>


  		




  186
  
  
    
    </dependency>


  		




  187
  
  
    
  


  		




  188
  
  
    
  </dependencies>


  		




  189
  
  
    
  


  		




  190
  
  
    
  <properties>


  		




  191
  
  
    
    <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>


  		




  192
  
  
    
  </properties>


  		




  193
  
  
    
    


  		




  194
  
  
    
    <build>


  		




  195
  
  
    
      <!-- Configure the webapp -->


  		




  196
  
  
    
      <finalName>cdmserver</finalName> 


  		




  197
  
  
    
      <plugins>


  		




  198
  
  
    
        <plugin>


  		




  199
  
  
    
          <groupId>org.apache.maven.plugins</groupId>


  		




  200
  
  
    
          <artifactId>maven-war-plugin</artifactId>


  		




  201
  
  
    
          <version>2.1-beta-1</version>


  		




  202
  
  
    
        </plugin>


  		




  203
  
  
    
      </plugins>


  		




  204
  
  
    
    </build>


  		




  205
  
  
    
</project>


  		












  

    
      vibrant-webapp/src/main/java/eu/etaxonomy/cdm/remote/config/AbstractWebApplicationConfigurer.java
    
  





  1
  
  
    
// $Id$


  		




  2
  
  
    
/**


  		




  3
  
  
    
 * Copyright (C) 2009 EDIT


  		




  4
  
  
    
 * European Distributed Institute of Taxonomy 


  		




  5
  
  
    
 * http://www.e-taxonomy.eu


  		




  6
  
  
    
 * 


  		




  7
  
  
    
 * The contents of this file are subject to the Mozilla Public License Version 1.1


  		




  8
  
  
    
 * See LICENSE.TXT at the top of this package for the full license terms.


  		




  9
  
  
    
 */


  		




  10
  
  
    
package eu.etaxonomy.cdm.remote.config;


  		




  11
  
  
    

  		




  12
  
  
    
import java.util.ArrayList;


  		




  13
  
  
    
import java.util.List;


  		




  14
  
  
    

  		




  15
  
  
    
import org.apache.log4j.Logger;


  		




  16
  
  
    
import org.springframework.beans.factory.annotation.Autowired;


  		




  17
  
  
    
import org.springframework.context.ApplicationContext;


  		




  18
  
  
    
import org.springframework.web.context.WebApplicationContext;


  		




  19
  
  
    

  		




  20
  
  
    
/**


  		




  21
  
  
    
 * @author a.kohlbecker


  		




  22
  
  
    
 * @date 20.07.2010


  		




  23
  
  
    
 *


  		




  24
  
  
    
 */


  		




  25
  
  
    
public abstract class AbstractWebApplicationConfigurer {


  		




  26
  
  
    

  		




  27
  
  
    
    private static final String ATTRIBUTE_ERROR_MESSAGES = "cdm.errorMessages";


  		




  28
  
  
    

  		




  29
  
  
    
	public static final Logger logger = Logger.getLogger(AbstractWebApplicationConfigurer.class);


  		




  30
  
  
    
	


  		




  31
  
  
    
	WebApplicationContext webApplicationContext;


  		




  32
  
  
    

  		




  33
  
  
    
	


  		




  34
  
  
    
	@Autowired


  		




  35
  
  
    
	public void setApplicationContext(ApplicationContext applicationContext){


  		




  36
  
  
    

  		




  37
  
  
    
		if(WebApplicationContext.class.isAssignableFrom(applicationContext.getClass())) {


  		




  38
  
  
    
			this.webApplicationContext = (WebApplicationContext)applicationContext;


  		




  39
  
  
    
		} else {


  		




  40
  
  
    
			logger.error("The " + this.getClass().getSimpleName() + " only can be used within a WebApplicationContext");


  		




  41
  
  
    
		}


  		




  42
  
  
    
	}


  		




  43
  
  
    

  		




  44
  
  
    
	/**


  		




  45
  
  
    
	 * Find a property in the ServletContext if not found search in a second


  		




  46
  
  
    
	 * step in the environment variables of the OS


  		




  47
  
  
    
	 * 


  		




  48
  
  
    
	 * @param property


  		




  49
  
  
    
	 * @param required


  		




  50
  
  
    
	 * @return


  		




  51
  
  
    
	 */


  		




  52
  
  
    
	protected String findProperty(String property, boolean required) {


  		




  53
  
  
    
		// 1. look for the property in the ServletContext


  		




  54
  
  
    
		Object obj = webApplicationContext.getServletContext().getAttribute(property);


  		




  55
  
  
    
		String value = (String)obj;


  		




  56
  
  
    
		// 2. look for the property in environment variables of the OS


  		




  57
  
  
    
		if(value == null){


  		




  58
  
  
    
			value = System.getProperty(property);


  		




  59
  
  
    
		}


  		




  60
  
  
    
		if(value == null && required){


  		




  61
  
  
    
			logger.error("property {" + property + "} not found.");


  		




  62
  
  
    
			logger.error("--> This property can be set in two ways:");


  		




  63
  
  
    
			logger.error("--> 		1. as attribute to the ServletContext");


  		




  64
  
  
    
			logger.error("--> 		2. as system property e.g. -D" + property);


  		




  65
  
  
    
			logger.error("Stopping application ...");


  		




  66
  
  
    
			System.exit(-1);


  		




  67
  
  
    
		}


  		




  68
  
  
    
		return value;


  		




  69
  
  
    
	}


  		




  70
  
  
    

  		




  71
  
  
    
	protected void addErrorMessageToServletContextAttributes(String errorMessage) {


  		




  72
  
  
    
		Object o = webApplicationContext.getServletContext().getAttribute(ATTRIBUTE_ERROR_MESSAGES);


  		




  73
  
  
    
		List<String> messages;


  		




  74
  
  
    
		if(o != null  && o instanceof List<?>){


  		




  75
  
  
    
			messages = (List<String>) o;


  		




  76
  
  
    
		} else {


  		




  77
  
  
    
			messages = new ArrayList<String>();


  		




  78
  
  
    
		}


  		




  79
  
  
    
		messages.add(errorMessage);


  		




  80
  
  
    
		webApplicationContext.getServletContext().setAttribute(ATTRIBUTE_ERROR_MESSAGES, messages);


  		




  81
  
  
    
	}


  		




  82
  
  
    
	


  		




  83
  
  
    
   


  		




  84
  
  
    

  		




  85
  
  
    
}


  		












  

    
      vibrant-webapp/src/main/java/eu/etaxonomy/cdm/remote/config/DataSourceConfigurer.java
    
  





  1
  
  
    
// $Id$


  		




  2
  
  
    
/**


  		




  3
  
  
    
 * Copyright (C) 2009 EDIT


  		




  4
  
  
    
 * European Distributed Institute of Taxonomy


  		




  5
  
  
    
 * http://www.e-taxonomy.eu


  		




  6
  
  
    
 *


  		




  7
  
  
    
 * The contents of this file are subject to the Mozilla Public License Version 1.1


  		




  8
  
  
    
 * See LICENSE.TXT at the top of this package for the full license terms.


  		




  9
  
  
    
 */


  		




  10
  
  
    

  		




  11
  
  
    
package eu.etaxonomy.cdm.remote.config;


  		




  12
  
  
    

  		




  13
  
  
    
import java.io.File;


  		




  14
  
  
    
import java.lang.reflect.InvocationTargetException;


  		




  15
  
  
    
import java.lang.reflect.Method;


  		




  16
  
  
    
import java.sql.Connection;


  		




  17
  
  
    
import java.sql.ResultSet;


  		




  18
  
  
    
import java.sql.SQLException;


  		




  19
  
  
    
import java.util.Properties;


  		




  20
  
  
    

  		




  21
  
  
    
import javax.naming.NamingException;


  		




  22
  
  
    
import javax.sql.DataSource;


  		




  23
  
  
    

  		




  24
  
  
    
import org.apache.log4j.Logger;


  		




  25
  
  
    
import org.springframework.beans.factory.xml.XmlBeanFactory;


  		




  26
  
  
    
import org.springframework.context.annotation.Bean;


  		




  27
  
  
    
import org.springframework.context.annotation.Configuration;


  		




  28
  
  
    
import org.springframework.core.io.FileSystemResource;


  		




  29
  
  
    
import org.springframework.jndi.JndiObjectFactoryBean;


  		




  30
  
  
    

  		




  31
  
  
    
import com.mchange.v2.c3p0.ComboPooledDataSource;


  		




  32
  
  
    

  		




  33
  
  
    
import eu.etaxonomy.cdm.common.CdmUtils;


  		




  34
  
  
    
import eu.etaxonomy.cdm.model.common.CdmMetaData;


  		




  35
  
  
    
import eu.etaxonomy.cdm.model.common.CdmMetaData.MetaDataPropertyName;


  		




  36
  
  
    

  		




  37
  
  
    
/**


  		




  38
  
  
    
 * The <code>DataSourceConfigurer</code> can be used as a replacement for a xml configuration in the application context.


  		




  39
  
  
    
 * Enter the following in your application context configuration in order to enable the <code>DataSourceConfigurer</code>:


  		




  40
  
  
    
 *


  		




  41
  
  
    
<pre>


  		




  42
  
  
    
&lt;!-- enable processing of annotations such as @Autowired and @Configuration --&gt;


  		




  43
  
  
    
&lt;context:annotation-config/&gt;


  		




  44
  
  
    

  		




  45
  
  
    
&lt;bean class="eu.etaxonomy.cdm.remote.config.DataSourceConfigurer" &gt;


  		




  46
  
  
    
&lt;/bean&gt;


  		




  47
  
  
    
</pre>


  		




  48
  
  
    
 * The <code>DataSourceConfigurer</code> allows alternative ways to specify a data source:


  		




  49
  
  
    
 *


  		




  50
  
  
    
 * <ol>


  		




  51
  
  
    
 * <li>Specify the data source bean to use in the Java environment properties:


  		




  52
  
  
    
 * <code>-Dcdm.datasource={dataSourceName}</code> ({@link #ATTRIBUTE_DATASOURCE_NAME}).


  		




  53
  
  
    
 * The data source bean with the given name will then be loaded from the <code>cdm.beanDefinitionFile</code>


  		




  54
  
  
    
 * ({@link #CDM_BEAN_DEFINITION_FILE}), which must be a valid Spring bean definition file.


  		




  55
  
  
    
 * </li>


  		




  56
  
  
    
 * <li>


  		




  57
  
  
    
 * Use a JDBC data source which is bound into the JNDI context. In this case the JNDI name is specified


  		




  58
  
  
    
 * via the {@link #ATTRIBUTE_JDBC_JNDI_NAME} as attribute to the ServletContext.


  		




  59
  
  
    
 * This scenario usually being used by the cdm-server application.


  		




  60
  
  
    
 * </li>


  		




  61
  
  
    
 * </ol>


  		




  62
  
  
    
 * The attributes used in (1) and (2) are in a first step being searched in the ServletContext


  		




  63
  
  
    
 * if not found search in a second step in the environment variables of the OS, see:{@link #findProperty(String, boolean)}.


  		




  64
  
  
    
 *


  		




  65
  
  
    
 * @author a.kohlbecker


  		




  66
  
  
    
 * @date 04.02.2011


  		




  67
  
  
    
 *


  		




  68
  
  
    
 */


  		




  69
  
  
    
@Configuration


  		




  70
  
  
    
public class DataSourceConfigurer extends AbstractWebApplicationConfigurer {


  		




  71
  
  
    

  		




  72
  
  
    
    public static final Logger logger = Logger.getLogger(DataSourceConfigurer.class);


  		




  73
  
  
    

  		




  74
  
  
    
    private static final String ATTRIBUTE_JDBC_JNDI_NAME = "cdm.jdbcJndiName";


  		




  75
  
  
    
    private static final String HIBERNATE_DIALECT = "hibernate.dialect";


  		




  76
  
  
    
    private static final String HIBERNATE_SEARCH_DEFAULT_INDEX_BASE = "hibernate.search.default.indexBase";


  		




  77
  
  
    
    private static final String CDM_BEAN_DEFINITION_FILE = "cdm.beanDefinitionFile";


  		




  78
  
  
    
    private static final String ATTRIBUTE_DATASOURCE_NAME = "cdm.datasource";


  		




  79
  
  
    

  		




  80
  
  
    
    private static final String DATASOURCE_BEANDEF_DEFAULT = CdmUtils.getCdmHomeDir().getPath() + File.separator + "datasources.xml";


  		




  81
  
  
    

  		




  82
  
  
    
    private static String beanDefinitionFile = DATASOURCE_BEANDEF_DEFAULT;


  		




  83
  
  
    

  		




  84
  
  
    
    public void setBeanDefinitionFile(String filename){


  		




  85
  
  
    
        beanDefinitionFile = filename;


  		




  86
  
  
    
    }


  		




  87
  
  
    

  		




  88
  
  
    

  		




  89
  
  
    
    private DataSource dataSource;


  		




  90
  
  
    

  		




  91
  
  
    
    private Properties getHibernateProperties() {


  		




  92
  
  
    
        Properties hibernateProperties = webApplicationContext.getBean("jndiHibernateProperties", Properties.class);


  		




  93
  
  
    
        return hibernateProperties;


  		




  94
  
  
    
    }


  		




  95
  
  
    

  		




  96
  
  
    

  		




  97
  
  
    

  		




  98
  
  
    
    @Bean


  		




  99
  
  
    
    public DataSource dataSource() {


  		




  100
  
  
    

  		




  101
  
  
    
        String beanName = findProperty(ATTRIBUTE_DATASOURCE_NAME, true);


  		




  102
  
  
    
        String jndiName = null;


  		




  103
  
  
    
        if(this.dataSource == null){


  		




  104
  
  
    
            jndiName = findProperty(ATTRIBUTE_JDBC_JNDI_NAME, false);


  		




  105
  
  
    

  		




  106
  
  
    
            if(jndiName != null){


  		




  107
  
  
    
                dataSource = useJndiDataSource(jndiName);


  		




  108
  
  
    
            } else {


  		




  109
  
  
    
                dataSource = loadDataSourceBean(beanName);


  		




  110
  
  
    
            }


  		




  111
  
  
    
        }


  		




  112
  
  
    

  		




  113
  
  
    
        if(dataSource == null){


  		




  114
  
  
    
            return null;


  		




  115
  
  
    
        }


  		




  116
  
  
    

  		




  117
  
  
    
        // validate correct schema version


  		




  118
  
  
    
        try {


  		




  119
  
  
    

  		




  120
  
  
    
            Connection connection = dataSource.getConnection();


  		




  121
  
  
    

  		




  122
  
  
    
            ResultSet resultSet = connection.createStatement().executeQuery(MetaDataPropertyName.DB_SCHEMA_VERSION.getSqlQuery());


  		




  123
  
  
    
            String version = null;


  		




  124
  
  
    
            if(resultSet.next()){


  		




  125
  
  
    
                version = resultSet.getString(1);


  		




  126
  
  
    
            } else {


  		




  127
  
  
    
                throw new RuntimeException("Unable to retrieve version info from data source " + dataSource.toString());


  		




  128
  
  
    
            }


  		




  129
  
  
    

  		




  130
  
  
    
            connection.close();


  		




  131
  
  
    

  		




  132
  
  
    
            if(!CdmMetaData.isDbSchemaVersionCompatible(version)){


  		




  133
  
  
    
                /*


  		




  134
  
  
    
                 * any exception thrown here would be nested into a spring


  		




  135
  
  
    
                 * BeanException which can not be caught in the servlet


  		




  136
  
  
    
                 * container, so we post the information into the


  		




  137
  
  
    
                 * ServletContext


  		




  138
  
  
    
                 */


  		




  139
  
  
    
                String errorMessage = "Incompatible version [" + (beanName != null ? beanName : jndiName) + "] expected version: " + CdmMetaData.getDbSchemaVersion() + ",  data base version  " + version;


  		




  140
  
  
    
                addErrorMessageToServletContextAttributes(errorMessage);


  		




  141
  
  
    
            }


  		




  142
  
  
    

  		




  143
  
  
    

  		




  144
  
  
    
        } catch (SQLException e) {


  		




  145
  
  
    
            RuntimeException re =   new RuntimeException("Unable to connect or to retrieve version info from data source " + dataSource.toString() , e);


  		




  146
  
  
    
            addErrorMessageToServletContextAttributes(re.getMessage());


  		




  147
  
  
    
            throw re;


  		




  148
  
  
    

  		




  149
  
  
    
        }


  		




  150
  
  
    
        return dataSource;


  		




  151
  
  
    
    }


  		




  152
  
  
    

  		




  153
  
  
    

  		




  154
  
  
    
    private DataSource useJndiDataSource(String jndiName) {


  		




  155
  
  
    
        logger.info("using jndi datasource '" + jndiName + "'");


  		




  156
  
  
    

  		




  157
  
  
    
        JndiObjectFactoryBean jndiFactory = new JndiObjectFactoryBean();


  		




  158
  
  
    
        /*


  		




  159
  
  
    
        JndiTemplate jndiTemplate = new JndiTemplate();


  		




  160
  
  
    
        jndiFactory.setJndiTemplate(jndiTemplate); no need to use a JndiTemplate


  		




  161
  
  
    
        if I try using JndiTemplate I get an org.hibernate.AnnotationException: "Unknown Id.generator: system-increment"


  		




  162
  
  
    
        when running multiple intances via the Bootloader


  		




  163
  
  
    
        */


  		




  164
  
  
    
        jndiFactory.setResourceRef(true);


  		




  165
  
  
    
        jndiFactory.setJndiName(jndiName);


  		




  166
  
  
    
        try {


  		




  167
  
  
    
            jndiFactory.afterPropertiesSet();


  		




  168
  
  
    
        } catch (IllegalArgumentException e) {


  		




  169
  
  
    
            logger.error(e);


  		




  170
  
  
    
        } catch (NamingException e) {


  		




  171
  
  
    
            logger.error(e);


  		




  172
  
  
    
        }


  		




  173
  
  
    
        Object obj = jndiFactory.getObject();


  		




  174
  
  
    
        return (DataSource)obj;


  		




  175
  
  
    
    }


  		




  176
  
  
    

  		




  177
  
  
    
    private DataSource loadDataSourceBean(String beanName) {


  		




  178
  
  
    

  		




  179
  
  
    
        String beanDefinitionFileFromProperty = findProperty(CDM_BEAN_DEFINITION_FILE, false);


  		




  180
  
  
    
        String path = (beanDefinitionFileFromProperty != null ? beanDefinitionFileFromProperty : beanDefinitionFile);


  		




  181
  
  
    
        logger.info("loading DataSourceBean '" + beanName + "' from: " + path);


  		




  182
  
  
    
        FileSystemResource file = new FileSystemResource(path);


  		




  183
  
  
    
        XmlBeanFactory beanFactory  = new XmlBeanFactory(file);


  		




  184
  
  
    
        DataSource dataSource = beanFactory.getBean(beanName, DataSource.class);


  		




  185
  
  
    
        if(dataSource instanceof ComboPooledDataSource){


  		




  186
  
  
    
            logger.info("DataSourceBean '" + beanName + "' is a ComboPooledDataSource [URL:" + ((ComboPooledDataSource)dataSource).getJdbcUrl()+ "]");


  		




  187
  
  
    
        } else {


  		




  188
  
  
    
            logger.error("DataSourceBean '" + beanName + "' IS NOT a ComboPooledDataSource");


  		




  189
  
  
    
        }


  		




  190
  
  
    
        return dataSource;


  		




  191
  
  
    
    }


  		




  192
  
  
    

  		




  193
  
  
    
    @Bean


  		




  194
  
  
    
    public Properties hibernateProperties(){


  		




  195
  
  
    
        Properties props = getHibernateProperties();


  		




  196
  
  
    
        props.setProperty(HIBERNATE_DIALECT, inferHibernateDialectName());


  		




  197
  
  
    
        props.setProperty(HIBERNATE_SEARCH_DEFAULT_INDEX_BASE, CdmUtils.getCdmHomeDir().getPath() + "/remote-webapp/index/".replace("/", File.separator) + findProperty(ATTRIBUTE_DATASOURCE_NAME, true));


  		




  198
  
  
    
        logger.debug("hibernateProperties: " + props.toString());


  		




  199
  
  
    
        return props;


  		




  200
  
  
    
    }


  		




  201
  
  
    

  		




  202
  
  
    
    public String inferHibernateDialectName() {


  		




  203
  
  
    
        DataSource ds = dataSource();


  		




  204
  
  
    
        String url = "<SEE PRIOR REFLECTION ERROR>";


  		




  205
  
  
    
        Method m = null;


  		




  206
  
  
    
        try {


  		




  207
  
  
    
            m = ds.getClass().getMethod("getUrl");


  		




  208
  
  
    
        } catch (SecurityException e) {


  		




  209
  
  
    
            logger.error(e);


  		




  210
  
  
    
        } catch (NoSuchMethodException e) {


  		




  211
  
  
    
            try {


  		




  212
  
  
    
                m = ds.getClass().getMethod("getJdbcUrl");


  		




  213
  
  
    
            } catch (SecurityException e2) {


  		




  214
  
  
    
                logger.error(e2);


  		




  215
  
  
    
            } catch (NoSuchMethodException e2) {


  		




  216
  
  
    
                logger.error(e2);


  		




  217
  
  
    
            }


  		




  218
  
  
    
        }


  		




  219
  
  
    
        try {


  		




  220
  
  
    
            url = (String)m.invoke(ds);


  		




  221
  
  
    
        } catch (IllegalArgumentException e) {


  		




  222
  
  
    
            logger.error(e);


  		




  223
  
  
    
        } catch (IllegalAccessException e) {


  		




  224
  
  
    
            logger.error(e);


  		




  225
  
  
    
        } catch (InvocationTargetException e) {


  		




  226
  
  
    
            logger.error(e);


  		




  227
  
  
    
        } catch (SecurityException e) {


  		




  228
  
  
    
            logger.error(e);


  		




  229
  
  
    
        }


  		




  230
  
  
    

  		




  231
  
  
    
        if(url != null && url.contains("mysql")){


  		




  232
  
  
    
            return "org.hibernate.dialect.MySQLDialect";


  		




  233
  
  
    
        }


  		




  234
  
  
    

  		




  235
  
  
    
        logger.error("hibernate dialect mapping for "+url+ " not jet implemented or unavailable");


  		




  236
  
  
    
        return null;


  		




  237
  
  
    
    }


  		




  238
  
  
    

  		




  239
  
  
    
}


  		












  

    
      vibrant-webapp/src/main/java/eu/etaxonomy/cdm/remote/config/LoggingConfigurer.java
    
  





  1
  
  
    
// $Id$


  		




  2
  
  
    
/**


  		




  3
  
  
    
 * Copyright (C) 2009 EDIT


  		




  4
  
  
    
 * European Distributed Institute of Taxonomy 


  		




  5
  
  
    
 * http://www.e-taxonomy.eu


  		




  6
  
  
    
 * 


  		




  7
  
  
    
 * The contents of this file are subject to the Mozilla Public License Version 1.1


  		




  8
  
  
    
 * See LICENSE.TXT at the top of this package for the full license terms.


  		




  9
  
  
    
 */


  		




  10
  
  
    
package eu.etaxonomy.cdm.remote.config;


  		




  11
  
  
    

  		




  12
  
  
    
import java.io.IOException;


  		




  13
  
  
    

  		




  14
  
  
    
import org.apache.log4j.Logger;


  		




  15
  
  
    
import org.apache.log4j.PatternLayout;


  		




  16
  
  
    
import org.apache.log4j.RollingFileAppender;


  		




  17
  
  
    
import org.springframework.beans.factory.InitializingBean;


  		




  18
  
  
    
import org.springframework.context.annotation.Configuration;


  		




  19
  
  
    

  		




  20
  
  
    
/**


  		




  21
  
  
    
 * @author a.kohlbecker


  		




  22
  
  
    
 * @date 20.07.2010


  		




  23
  
  
    
 * 


  		




  24
  
  
    
 */


  		




  25
  
  
    
@Configuration


  		




  26
  
  
    
public class LoggingConfigurer extends AbstractWebApplicationConfigurer implements InitializingBean  {


  		




  27
  
  
    

  		




  28
  
  
    
	/**


  		




  29
  
  
    
	 * 


  		




  30
  
  
    
	 */


  		




  31
  
  
    
	private static final String ROLLING_FILE_APPENDER = "rollingFileAppender";


  		




  32
  
  
    
	private static final String CDM_LOGFILE = "cdm.logfile";


  		




  33
  
  
    

  		




  34
  
  
    
	protected void configureLogFile() {


  		




  35
  
  
    
		PatternLayout layout = new PatternLayout("%d %p [%c] - %m%n");


  		




  36
  
  
    
		String logFile = findProperty(CDM_LOGFILE, false);


  		




  37
  
  
    
		if (logFile == null) {


  		




  38
  
  
    
			logger.info("No logfile specified, runing without.");


  		




  39
  
  
    
			return;


  		




  40
  
  
    
		}


  		




  41
  
  
    
		try {


  		




  42
  
  
    
			RollingFileAppender appender = new RollingFileAppender(layout, logFile);


  		




  43
  
  
    
			appender.setName(ROLLING_FILE_APPENDER);


  		




  44
  
  
    
			appender.setMaxBackupIndex(3);


  		




  45
  
  
    
			appender.setMaxFileSize("2MB");


  		




  46
  
  
    
			Logger.getRootLogger().addAppender(appender);


  		




  47
  
  
    
			logger.info("logging to :" + logFile);


  		




  48
  
  
    
		} catch (IOException e) {


  		




  49
  
  
    
			logger.error("Creating RollingFileAppender failed:", e);


  		




  50
  
  
    
		}


  		




  51
  
  
    
	}


  		




  52
  
  
    

  		




  53
  
  
    
	/* (non-Javadoc)


  		




  54
  
  
    
	 * @see org.springframework.beans.factory.InitializingBean#afterPropertiesSet()


  		




  55
  
  
    
	 */


  		




  56
  
  
    
	@Override


  		




  57
  
  
    
	public void afterPropertiesSet() throws Exception {


  		




  58
  
  
    
		configureLogFile();


  		




  59
  
  
    
	}


  		




  60
  
  
    
	


  		




  61
  
  
    
	


  		




  62
  
  
    

  		




  63
  
  
    
}


  		












  

    
      vibrant-webapp/src/main/resources/log4j.properties
    
  





  1
  
  
    
#


  		




  2
  
  
    
#


  		




  3
  
  
    
# If you are having problems with logging you may debug Log4J initialization,


  		




  4
  
  
    
# start the application with a system property log4j.configDebug set to "true".


  		




  5
  
  
    
# E.g.:


  		




  6
  
  
    
#


  		




  7
  
  
    
#     java -Dlog4j.configDebug=true


  		




  8
  
  
    
#


  		




  9
  
  
    

  		




  10
  
  
    
log4j.rootLogger=WARN, stdout


  		




  11
  
  
    

  		




  12
  
  
    

  		




  13
  
  
    
log4j.appender.stdout=org.apache.log4j.ConsoleAppender


  		




  14
  
  
    
log4j.appender.stdout.layout=org.apache.log4j.PatternLayout


  		




  15
  
  
    
log4j.appender.stdout.layout.ConversionPattern=%d %p [%c] - %m%n


  		




  16
  
  
    

  		




  17
  
  
    
##


  		




  18
  
  
    
## NOTICE !!!!


  		




  19
  
  
    
## no need to configure a FileAppender here


  		




  20
  
  
    
## use eu.etaxonomy.cdm.remote.config.LoggingConfigurer instead


  		




  21
  
  
    
##


  		




  22
  
  
    

  		




  23
  
  
    
###


  		




  24
  
  
    
# cdm


  		




  25
  
  
    
###


  		




  26
  
  
    
log4j.logger.eu.etaxonomy.cdm = INFO


  		




  27
  
  
    
# 	  avoid vast amount of "getCitation not yet implemented" & "getProblems not yet implemented" messages


  		




  28
  
  
    
log4j.logger.eu.etaxonomy.cdm.model.name.TaxonNameBase = ERROR


  		




  29
  
  
    
log4j.logger.eu.etaxonomy.cdm.database.UpdatableRoutingDataSource = INFO


  		




  30
  
  
    
log4j.logger.eu.etaxonomy.cdm.persistence.dao.AbstractBeanInitializer = ERROR


  		




  31
  
  
    
log4j.logger.eu.etaxonomy.cdm.remote.controller = INFO


  		




  32
  
  
    
log4j.logger.eu.etaxonomy.cdm.remote.controller.interceptor = WARN


  		




  33
  
  
    
#log4j.logger.eu.etaxonomy.cdm.remote.json.processor.AbstractCdmBeanProcessor  = DEBUG


  		




  34
  
  
    
#     prevent CdmExceptionResolver from logging errors


  		




  35
  
  
    
log4j.logger.eu.etaxonomy.cdm.remote.exception.CdmExceptionResolver = ERROR


  		




  36
  
  
    

  		




  37
  
  
    
###


  		




  38
  
  
    
# springframework


  		




  39
  
  
    
###


  		




  40
  
  
    
log4j.logger.org.springframework = warn


  		




  41
  
  
    
log4j.logger.org.springframework.web.servlet.DispatcherServlet = WARN


  		




  42
  
  
    
log4j.logger.org.springframework.web.servlet.mvc.annotation = WARN


  		




  43
  
  
    
#log4j.category.org.springframework.web.servlet.mvc.support=DEBUG, stdout


  		




  44
  
  
    
log4j.logger.org.springframework.web.servlet.view = WARN


  		




  45
  
  
    

  		




  46
  
  
    
###


  		




  47
  
  
    
# json-lib


  		




  48
  
  
    
###


  		




  49
  
  
    
log4j.logger.net.sf.json.JSONObject = ERROR


  		




  50
  
  
    

  		




  51
  
  
    
###


  		




  52
  
  
    
# Hibernate


  		




  53
  
  
    
###


  		




  54
  
  
    
log4j.logger.org.hibernate=WARN


  		




  55
  
  
    
#     log just the SQL


  		




  56
  
  
    
log4j.logger.org.hibernate.SQL=WARN


  		




  57
  
  
    
log4j.logger.org.hibernate.search = ERROR


  		




  58
  
  
    
#     log JDBC bind parameters


  		




  59
  
  
    
log4j.logger.org.hibernate.type=WARN


  		




  60
  
  
    
#     log schema export/update


  		




  61
  
  
    
log4j.logger.org.hibernate.tool.hbm2ddl=WARN


  		




  62
  
  
    
# This overcomes the proxy narrow log of hibernate


  		




  63
  
  
    
log4j.logger.org.hibernate.engine.StatefulPersistenceContext.ProxyWarnLog=ERROR


  		




  64
  
  
    

  		




  65
  
  
    
### log transaction binding


  		




  66
  
  
    
#log4j.logger.org.hibernate.transaction=debug


  		




  67
  
  
    
#log4j.logger.org.springframework.transaction.support.TransactionSynchronizationManager=trace


  		












  

    
      vibrant-webapp/src/main/webapp/WEB-INF/applicationContext.views.xml
    
  





  1
  
  
    
<?xml version="1.0" encoding="UTF-8"?>


  		




  2
  
  
    
<beans xmlns="http://www.springframework.org/schema/beans"


  		




  3
  
  
    
    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"


  		




  4
  
  
    
    xmlns:tx="http://www.springframework.org/schema/tx"


  		




  5
  
  
    
    xmlns:context="http://www.springframework.org/schema/context"


  		




  6
  
  
    
    xsi:schemaLocation="http://www.springframework.org/schema/beans   http://www.springframework.org/schema/beans/spring-beans-2.5.xsd


  		




  7
  
  
    
    http://www.springframework.org/schema/context   http://www.springframework.org/schema/context/spring-context-2.5.xsd


  		




  8
  
  
    
    http://www.springframework.org/schema/tx   http://www.springframework.org/schema/tx/spring-tx-2.5.xsd


  		




  9
  
  
    
    ">


  		




  10
  
  
    

  		




  11
  
  
    
  <!--


  		




  12
  
  
    
    - Accepts a configuration file.


  		




  13
  
  
    
    - The default configuration file is /WEB-INF/views.xml


  		




  14
  
  
    
    <bean  name="viewResolver" class="org.springframework.web.servlet.view.XmlViewResolver">


  		




  15
  
  
    
     <!- -


  		




  16
  
  
    
     FOR DEBUGING ONLY !!!!


  		




  17
  
  
    
     <property name="cache" value="false"/>


  		




  18
  
  
    
      - ->


  		




  19
  
  
    
    </bean>


  		




  20
  
  
    
  -->


  		




  21
  
  
    

  		




  22
  
  
    
  <import resource="classpath:eu/etaxonomy/cdm/remote/json/jsonConfigurations.xml"/>


  		




  23
  
  
    

  		




  24
  
  
    
  <!--


  		




  25
  
  
    
    A TaxonNodeComparator with substitutionRules to allow correct sorted


  		




  26
  
  
    
    taxon nodes e.g. in a taxonomic tree browser


  		




  27
  
  
    
  -->


  		




  28
  
  
    
    <bean  name="taxonNodeByNameComparator" class="eu.etaxonomy.cdm.model.taxon.TaxonNodeByNameComparator">


  		




  29
  
  
    
      <property name="substitutionRules">


  		




  30
  
  
    
        <map>


  		




  31
  
  
    
          <entry key=".*?( sp\.| ssp\.| spp\.| n\.|Nomina dubia|Incertae sedis|Nomina excludenda).*" value="_" />


  		




  32
  
  
    
        </map>


  		




  33
  
  
    
      </property>


  		




  34
  
  
    
    </bean>


  		




  35
  
  
    

  		




  36
  
  
    
</beans>


  		












  

    
      vibrant-webapp/src/main/webapp/WEB-INF/applicationContext.xml
    
  





  1
  
  
    
<?xml version="1.0" encoding="UTF-8"?>


  		




  2
  
  
    
<beans xmlns="http://www.springframework.org/schema/beans"


  		




  3
  
  
    
    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"


  		




  4
  
  
    
    xmlns:tx="http://www.springframework.org/schema/tx"


  		




  5
  
  
    
    xmlns:context="http://www.springframework.org/schema/context"


  		




  6
  
  
    
    xsi:schemaLocation="http://www.springframework.org/schema/beans   http://www.springframework.org/schema/beans/spring-beans-2.5.xsd


  		




  7
  
  
    
    http://www.springframework.org/schema/context   http://www.springframework.org/schema/context/spring-context-2.5.xsd


  		




  8
  
  
    
    http://www.springframework.org/schema/tx   http://www.springframework.org/schema/tx/spring-tx-2.5.xsd


  		




  9
  
  
    
    ">


  		




  10
  
  
    

  		




  11
  
  
    
   <!-- include default application context and customization -->


  		




  12
  
  
    
    <import resource="classpath:/eu/etaxonomy/cdm/defaultApplicationContext.xml"/>


  		




  13
  
  
    
    <bean id="persistentTermInitializer" class="eu.etaxonomy.cdm.database.PersistentTermInitializer">


  		




  14
  
  
    
       <property name="omit" value="false" />


  		




  15
  
  
    
    </bean>


  		




  16
  
  
    
   <context:component-scan base-package="eu/etaxonomy/cdm/ext" />


  		




  17
  
  
    

  		




  18
  
  
    
   <import resource="classpath:/eu/etaxonomy/cdm/remote.xml"/>


  		




  19
  
  
    

  		




  20
  
  
    
    <context:component-scan base-package="eu/etaxonomy/cdm/io">


  		




  21
  
  
    
        <context:exclude-filter type="regex" expression="eu\.etaxonomy\.cdm\.io\.pesi.*" />


  		




  22
  
  
    
        <context:exclude-filter type="regex" expression="eu\.etaxonomy\.cdm\.io\.faunaEuropaea.*" />


  		




  23
  
  
    
        <context:exclude-filter type="regex" expression="eu\.etaxonomy\.cdm\.io\.erms.*" />


  		




  24
  
  
    
        <context:exclude-filter type="regex" expression="eu\.etaxonomy\.cdm\.io\.eflora.*" />


  		




  25
  
  
    
        <context:exclude-filter type="regex" expression="eu\.etaxonomy\.cdm\.io\.berlinModel.*" />


  		




  26
  
  
    
    </context:component-scan>


  		




  27
  
  
    

  		




  28
  
  
    
    <bean class="org.springframework.beans.factory.config.PropertyPlaceholderConfigurer">


  		




  29
  
  
    
    <property name="properties">


  		




  30
  
  
    
      <props>


  		




  31
  
  
    
          <prop key="eu.etaxonomy.cdm.base.path">${user.home}/.cdmLibrary/</prop>


  		




  32
  
  
    
          <prop key="eu.etaxonomy.cdm.search.index.path">${user.home}/.cdmLibrary/index/</prop>


  		




  33
  
  
    
      </props>


  		




  34
  
  
    
        </property>


  		




  35
  
  
    
  </bean>


  		




  36
  
  
    

  		




  37
  
  
    
    <!-- enable the configuration of transactional behavior based on annotations -->


  		




  38
  
  
    
    <tx:annotation-driven transaction-manager="transactionManager"/>


  		




  39
  
  
    

  		




  40
  
  
    
    <!-- import additional beans into the root context -->


  		




  41
  
  
    
    <import resource="applicationContext.views.xml"/>


  		




  42
  
  
    

  		




  43
  
  
    
    <!-- CONFIGURE WEB APPLICATION HERE -->


  		




  44
  
  
    
    <import resource="datasources/configurable.xml" />


  		




  45
  
  
    

  		




  46
  
  
    
    <context:annotation-config/>


  		




  47
  
  
    
    <bean class="eu.etaxonomy.cdm.remote.config.LoggingConfigurer">


  		




  48
  
  
    
    </bean>


  		




  49
  
  
    

  		




  50
  
  
    
     <!-- OAI-PMH TODO externalize? -->


  		




  51
  
  
    
     <bean name="taxonOaiPmhController" class="eu.etaxonomy.cdm.remote.controller.oaipmh.TaxonOaiPmhController">


  		




  52
  
  
    
     <property name="cachingModel" ref="taxonOaiPmhCacheMapping"/>


  		




  53
  
  
    
   </bean>


  		




  54
  
  
    

  		




  55
  
  
    
  <bean name="taxonOaiPmhCacheMapping" class="org.springmodules.cache.provider.ehcache.EhCacheCachingModel">


  		




  56
  
  
    
          <property name="cacheName" value="eu.etaxonomy.cdm.remote.controller.TaxonOaiPmhController.resumptionToken"/>


  		




  57
  
  
    
  </bean>


  		




  58
  
  
    
  <bean id="cacheManager" class="org.springframework.cache.ehcache.EhCacheManagerFactoryBean">


  		




  59
  
  
    
    <property name="configLocation" value="classpath:/eu/etaxonomy/cdm/remote/ehcache.xml" />


  		




  60
  
  
    
        <property name="shared" value="true"/>


  		




  61
  
  
    
    </bean>


  		




  62
  
  
    

  		




  63
  
  
    
  <bean id="serializableFactory" class="org.springmodules.cache.serializable.XStreamSerializableFactory"/>


  		




  64
  
  
    

  		




  65
  
  
    
  <bean id="cacheProviderFacade" class="org.springmodules.cache.provider.ehcache.EhCacheFacade">


  		




  66
  
  
    
      <property name="cacheManager" ref="cacheManager" />


  		




  67
  
  
    
      <property name="serializableFactory" ref="serializableFactory"/>


  		




  68
  
  
    
  </bean>


  		




  69
  
  
    

  		




  70
  
  
    
</beans>


  		












  

    
      vibrant-webapp/src/main/webapp/WEB-INF/cdmlib-remote-servlet.xml
    
  





  1
  
  
    
<?xml version="1.0" encoding="UTF-8"?>


  		




  2
  
  
    
<beans xmlns="http://www.springframework.org/schema/beans"


  		




  3
  
  
    
  xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:context="http://www.springframework.org/schema/context"


  		




  4
  
  
    
  xmlns:tx="http://www.springframework.org/schema/tx"


  		




  5
  
  
    
  xsi:schemaLocation="http://www.springframework.org/schema/beans


  		




  6
  
  
    
    http://www.springframework.org/schema/beans/spring-beans-2.5.xsd


  		




  7
  
  
    
    http://www.springframework.org/schema/context http://www.springframework.org/schema/context/spring-context-2.5.xsd


  		




  8
  
  
    
    http://www.springframework.org/schema/tx http://www.springframework.org/schema/tx/spring-tx-2.5.xsd


  		




  9
  
  
    
    ">


  		




  10
  
  
    
  <context:component-scan base-package="eu/etaxonomy/cdm/remote" />


  		




  11
  
  
    

  		




  12
  
  
    

  		




  13
  
  
    
  <!--


  		




  14
  
  
    
    ======= HandlerMappings =======


  		




  15
  
  
    
    -->


  		




  16
  
  
    
  <!--


  		




  17
  
  
    
    first we try to find the controller using the simpleurlmapping, then


  		




  18
  
  
    
    the classname this follows the principal of "convention over


  		




  19
  
  
    
    configuration"


  		




  20
  
  
    
  -->


  		




  21
  
  
    
  <bean


  		




  22
  
  
    
    class="org.springframework.web.servlet.mvc.annotation.DefaultAnnotationHandlerMapping">


  		




  23
  
  
    
    <property name="order" value="1" />


  		




  24
  
  
    
    <property name="interceptors">


  		




  25
  
  
    
      <list>


  		




  26
  
  
    
        <!--<ref bean="contentNegociationHandlerInterceptor" /> -->


  		




  27
  
  
    
        <ref bean="localeContextHandlerInterceptor" />


  		




  28
  
  
    
      </list>


  		




  29
  
  
    
    </property>


  		




  30
  
  
    
    <property name="pathMatcher">


  		




  31
  
  
    
      <!--  must match the pathMatcher as set in AnnotationMethodHandlerAdapter -->


  		




  32
  
  
    
      <bean class="eu.etaxonomy.cdm.remote.controller.util.CdmAntPathMatcher" />


  		




  33
  
  
    
    </property>


  		




  34
  
  
    
  </bean>


  		




  35
  
  
    

  		




  36
  
  
    
    <!--


  		




  37
  
  
    
   -->


  		




  38
  
  
    
  <bean class="org.springframework.web.servlet.handler.SimpleUrlHandlerMapping">


  		




  39
  
  
    
    <property name="order" value="0" />


  		




  40
  
  
    
    <property name="mappings">


  		




  41
  
  
    
      <props>


  		




  42
  
  
    
        <prop key="/index.do">urlFilenameViewController</prop>


  		




  43
  
  
    
        <prop key="/">welcomeFileViewController</prop>


  		




  44
  
  
    
      </props>


  		




  45
  
  
    
    </property>


  		




  46
  
  
    
  </bean>


  		




  47
  
  
    

  		




  48
  
  
    
  <!--


  		




  49
  
  
    
  ======= HandlerAdapters =======


  		




  50
  
  
    
  -->


  		




  51
  
  
    
  <bean class="org.springframework.web.servlet.mvc.annotation.AnnotationMethodHandlerAdapter">


  		




  52
  
  
    
     <property name="pathMatcher">


  		




  53
  
  
    
          <!--  must match the pathMatcher as set in DefaultAnnotationHandlerMapping -->


  		




  54
  
  
    
            <bean class="eu.etaxonomy.cdm.remote.controller.util.CdmAntPathMatcher" />


  		




  55
  
  
    
       </property>


  		




  56
  
  
    
  </bean>


  		




  57
  
  
    

  		




  58
  
  
    
  <!-- needed when using SimpleUrlHandlerMapping 	-->


  		




  59
  
  
    
  <bean


  		




  60
  
  
    
    class="org.springframework.web.servlet.mvc.SimpleControllerHandlerAdapter" />


  		




  61
  
  
    

  		




  62
  
  
    

  		




  63
  
  
    
  <!--


  		




  64
  
  
    
  ======= HandlerInterceptors =======


  		




  65
  
  
    
  -->


  		




  66
  
  
    
  <!--


  		




  67
  
  
    
  <bean id="datasourceContextHandlerInterceptor"


  		




  68
  
  
    
    class="eu.etaxonomy.cdm.remote.controller.interceptor.DatasourceContextHandlerInterceptor" /> -->


  		




  69
  
  
    
  <bean id="localeContextHandlerInterceptor"


  		




  70
  
  
    
    class="eu.etaxonomy.cdm.remote.controller.interceptor.LocaleContextHandlerInterceptor" />


  		




  71
  
  
    
  <!--


  		




  72
  
  
    
     === no longer needed, replaced by ContentNegotiatingViewResolver ==


  		




  73
  
  
    
  <bean id="contentNegociationHandlerInterceptor"


  		




  74
  
  
    
    class="eu.etaxonomy.cdm.remote.controller.interceptor.ContentNegociationHandlerInterceptor">


  		




  75
  
  
    
    <property name="mapping">


  		




  76
  
  
    
      <map>


  		




  77
  
  
    
        <entry key="text/json" value="json" />


  		




  78
  
  
    
        <entry key="application/json" value="json" />


  		




  79
  
  
    
        <entry key="application/xml" value="xml" />


  		




  80
  
  
    
      </map>


  		




  81
  
  
    
    </property>


  		




  82
  
  
    
    <property name="defaultExtension" value="xml" />


  		




  83
  
  
    
  </bean>


  		




  84
  
  
    
   -->


  		




  85
  
  
    

  		




  86
  
  
    
  <!--


  		




  87
  
  
    
   ======= ViewControllers =======


  		




  88
  
  
    
   -->


  		




  89
  
  
    
  <bean id="urlFilenameViewController" class="org.springframework.web.servlet.mvc.UrlFilenameViewController">


  		




  90
  
  
    
  </bean>


  		




  91
  
  
    
  <!--


  		




  92
  
  
    
    The welcome-file-list in the web.xml will is ignored since the


  		




  93
  
  
    
    cdmserver servlet is mapped to the root path [/] So the welcome file


  		




  94
  
  
    
    list is being replaced by a SimpleUrlHandlerMapping on the root path


  		




  95
  
  
    
    [/] which is mapped via this ViewController to the [index] view


  		




  96
  
  
    
  -->


  		




  97
  
  
    
  <bean id="welcomeFileViewController"


  		




  98
  
  
    
    class="org.springframework.web.servlet.mvc.UrlFilenameViewController">


  		




  99
  
  
    
    <property name="suffix">


  		




  100
  
  
    
      <value>index</value>


  		




  101
  
  
    
    </property>


  		




  102
  
  
    
  </bean>


  		




  103
  
  
    

  		




  104
  
  
    

  		




  105
  
  
    
  <!--


  		




  106
  
  
    
    ======= ViewResolver =======


  		




  107
  
  
    
    -->


  		




  108
  
  
    

  		




  109
  
  
    
    <bean id="viewResolverJsp"


  		




  110
  
  
    
        class="org.springframework.web.servlet.view.InternalResourceViewResolver">


  		




  111
  
  
    
        <property name="order" value="0" />


  		




  112
  
  
    
        <property name="prefix" value="/WEB-INF/jsp/" />


  		




  113
  
  
    
        <property name="suffix" value=".jsp" />


  		




  114
  
  
    
        <property name="viewNames">


  		




  115
  
  
    
            <!--


  		




  116
  
  
    
                view names (or name patterns) that can be handled


  		




  117
  
  
    
            -->


  		




  118
  
  
    
            <list>


  		




  119
  
  
    
                <value>index</value>


  		




  120
  
  
    
            </list>


  		




  121
  
  
    
        </property>


  		




  122
  
  
    
    </bean>


  		




  123
  
  
    

  		




  124
  
  
    
  <bean id="oaiViewResolver" class="org.springframework.web.servlet.view.XmlViewResolver">


  		




  125
  
  
    
        <property name="order" value="1"/>


  		




  126
  
  
    
        <property name="location" value="/WEB-INF/oai-views.xml"/>


  		




  127
  
  
    
        <!-- FOR DEBUGING ONLY !!!!


  		




  128
  
  
    
        <property name="cache" value="false"/>


  		




  129
  
  
    
         -->


  		




  130
  
  
    
    </bean>


  		




  131
  
  
    

  		




  132
  
  
    
    <bean id="contentNegotiatingViewResolver" class="org.springframework.web.servlet.view.ContentNegotiatingViewResolver">


  		




  133
  
  
    
        <property name="order" value="2" />


  		




  134
  
  
    
        <property name="mediaTypes">


  		




  135
  
  
    
           <map>


  		




  136
  
  
    
          <entry key="xml" value="application/xml" />


  		




  137
  
  
    
        <entry key="dc" value="application/xml" />


  		




  138
  
  
    
        <entry key="rdf" value="application/xml" />


  		




  139
  
  
    
        <entry key="json" value="application/json" />


  		




  140
  
  
    
           </map>


  		




  141
  
  
    
        </property>


  		




  142
  
  
    
        <property name="viewResolvers">


  		




  143
  
  
    
            <list>


  		




  144
  
  
    
          <bean id="xmlTypeViewResolver" class="eu.etaxonomy.cdm.remote.view.PatternViewResolver">


  		




  145
  
  
    
              <property name="location" value="/WEB-INF/xml-views.xml"/>


  		




  146
  
  
    
              <!--


  		




  147
  
  
    
                  turn caching off FOR DEBUGING ONLY !!!!


  		




  148
  
  
    
              <property name="cache" value="false"/>


  		




  149
  
  
    
              -->


  		




  150
  
  
    
          </bean>


  		




  151
  
  
    
          <bean id="jsonTypeViewResolver" class="eu.etaxonomy.cdm.remote.view.PatternViewResolver">


  		




  152
  
  
    
              <property name="location" value="/WEB-INF/json-views.xml"/>


  		




  153
  
  
    
              <!--


  		




  154
  
  
    
                turn caching off FOR DEBUGING ONLY !!!!


  		




  155
  
  
    
              <property name="cache" value="false"/>


  		




  156
  
  
    
              -->


  		




  157
  
  
    
          </bean>


  		




  158
  
  
    
            </list>


  		




  159
  
  
    
        </property>


  		




  160
  
  
    
  </bean>


  		




  161
  
  
    

  		




  162
  
  
    
  <!--


  		




  163
  
  
    
  ======= Exception Handling =======


  		




  164
  
  
    
  -->


  		




  165
  
  
    
  <bean id="exceptionResolver" class="eu.etaxonomy.cdm.remote.exception.CdmExceptionResolver">


  		




  166
  
  
    
  </bean>


  		




  167
  
  
    

  		




  168
  
  
    
  <!--


  		




  169
  
  
    
    ======= Security =======


  		




  170
  
  
    
    -->


  		




  171
  
  
    
<!--    <bean id="basicProcessingFilter" class="org.springframework.security.ui.basicauth.BasicProcessingFilter">-->


  		




  172
  
  
    
<!--		<property name="authenticationManager"><ref bean="authenticationManager"/></property>-->


  		




  173
  
  
    
<!--		<property name="authenticationEntryPoint"><ref bean="authenticationEntryPoint"/></property>-->


  		




  174
  
  
    
<!--	</bean>-->


  		




  175
  
  
    
<!--	<bean id="authenticationEntryPoint" class="org.springframework.security.ui.basicauth.BasicProcessingFilterEntryPoint">-->


  		




  176
  
  
    
<!--		<property name="realmName"><value>Name Of Your Realm</value></property>-->


  		




  177
  
  
    
<!--	</bean>-->


  		




  178
  
  
    

  		




  179
  
  
    
</beans>


  		












  

    
      vibrant-webapp/src/main/webapp/WEB-INF/datasources/configurable.xml
    
  





  1
  
  
    
<?xml version="1.0" encoding="UTF-8"?>


  		




  2
  
  
    
<beans xmlns="http://www.springframework.org/schema/beans"


  		




  3
  
  
    
  xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"


  		




  4
  
  
    
  xmlns:context="http://www.springframework.org/schema/context"


  		




  5
  
  
    
  xsi:schemaLocation="http://www.springframework.org/schema/beans


  		




  6
  
  
    
    http://www.springframework.org/schema/beans/spring-beans-2.5.xsd


  		




  7
  
  
    
    http://www.springframework.org/schema/context


  		




  8
  
  
    
    http://www.springframework.org/schema/context/spring-context-2.5.xsd">


  		




  9
  
  
    

  		




  10
  
  
    
    <!-- enable processing of annotations such as @Autowired and @Configuration -->


  		




  11
  
  
    
    <context:annotation-config/>


  		




  12
  
  
    

  		




  13
  
  
    
    <bean class="eu.etaxonomy.cdm.remote.config.DataSourceConfigurer" >


  		




  14
  
  
    
    </bean>


  		




  15
  
  
    

  		




  16
  
  
    
    <bean id="jndiHibernateProperties" class="org.springframework.beans.factory.config.PropertiesFactoryBean">


  		




  17
  
  
    
        <property name="properties"><!-- This configures default hibernate properties -->


  		




  18
  
  
    
            <props>


  		




  19
  
  
    
              <!--


  		




  20
  
  
    
                the hibernate.dialect will be set by the JndiDataSourceConfig accorging to the


  		




  21
  
  
    
                according WebAppContext attributes or to the environment variable


  		




  22
  
  
    
              -->


  		




  23
  
  
    
              <prop key="hibernate.hbm2ddl.auto">validate</prop><!-- !!! must never be set to 'update' !!! -->


  		




  24
  
  
    
              <prop key="hibernate.cache.provider_class">org.hibernate.cache.NoCacheProvider</prop>


  		




  25
  
  
    
              <prop key="hibernate.show_sql">false</prop>


  		




  26
  
  
    
              <prop key="hibernate.format_sql">false</prop>


  		




  27
  
  
    
              <prop key="hibernate.search.default.directory_provider">org.hibernate.search.store.FSDirectoryProvider</prop>


  		




  28
  
  
    
              <prop key="hibernate.search.default.indexBase">${eu.etaxonomy.cdm.search.index.path}</prop><!-- set in applicationContext.xml -->


  		




  29
  
  
    
            </props>


  		




  30
  
  
    
        </property>


  		




  31
  
  
    
    </bean>


  		




  32
  
  
    
</beans>


  		












  

    
      vibrant-webapp/src/main/webapp/WEB-INF/datasources/datasources-local.xml
    
  





  1
  
  
    
<?xml version="1.0" encoding="UTF-8"?>


  		




  2
  
  
    
<beans xmlns="http://www.springframework.org/schema/beans"


  		




  3
  
  
    
	xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"


  		




  4
  
  
    
	xmlns:context="http://www.springframework.org/schema/context"


  		




  5
  
  
    
	xsi:schemaLocation="http://www.springframework.org/schema/beans


  		




  6
  
  
    
    http://www.springframework.org/schema/beans/spring-beans-2.5.xsd


  		




  7
  
  
    
    http://www.springframework.org/schema/context


  		




  8
  
  
    
    http://www.springframework.org/schema/context/spring-context-2.5.xsd">


  		




  9
  
  
    

  		




  10
  
  
    
    <bean id="dataSource"  lazy-init="true" class="eu.etaxonomy.cdm.database.UpdatableRoutingDataSource">


  		




  11
  
  
    
    	<property name="targetDataSources">


  		




  12
  
  
    
	      <map key-type="java.lang.String">


  		




  13
  
  
    
	         <entry key="cichorieae" value-ref="cichorieaeDataSource"/>


  		




  14
  
  
    
	         <entry key="palmae" value-ref="palmaeDataSource"/>


  		




  15
  
  
    
	         <entry key="diptera" value-ref="dipteraDataSource"/>


  		




  16
  
  
    
	      </map>


  		




  17
  
  
    
   		</property>


  		




  18
  
  
    
   		<property name="defaultTargetDataSource" ref="cichorieaeDataSource"/>


  		




  19
  
  
    
   </bean>


  		




  20
  
  
    

  		




  21
  
  
    
    <bean id="cichorieaeDataSource"  lazy-init="true" class="org.springframework.jdbc.datasource.DriverManagerDataSource">


  		




  22
  
  
    
        <property name="driverClassName" value="com.mysql.jdbc.Driver"/>


  		




  23
  
  
    
        <property name="username" value="${local.usr}"/>


  		




  24
  
  
    
        <property name="password" value="${local.pwd}"/>


  		




  25
  
  
    
        <property name="url" value="jdbc:mysql://${local.host}/cdm_local_cichorieae"/>


  		




  26
  
  
    
    </bean>


  		




  27
  
  
    
    <bean id="palmaeDataSource"  lazy-init="true" class="org.springframework.jdbc.datasource.DriverManagerDataSource">


  		




  28
  
  
    
        <property name="driverClassName" value="com.mysql.jdbc.Driver"/>


  		




  29
  
  
    
        <property name="username" value="${local.usr}"/>


  		




  30
  
  
    
        <property name="password" value="${local.pwd}"/>


  		




  31
  
  
    
        <property name="url" value="jdbc:mysql://${local.host}/cdm_local_palmae"/>


  		




  32
  
  
    
    </bean>


  		




  33
  
  
    

  		




  34
  
  
    
    <bean id="dipteraDataSource"  lazy-init="true" class="org.springframework.jdbc.datasource.DriverManagerDataSource">


  		




  35
  
  
    
        <property name="driverClassName" value="com.mysql.jdbc.Driver"/>


  		




  36
  
  
    
        <property name="username" value="${local.usr}"/>


  		




  37
  
  
    
        <property name="password" value="${local.pwd}"/>


  		




  38
  
  
    
        <property name="url" value="jdbc:mysql://${local.host}/cdm_local_diptera"/>


  		




  39
  
  
    
    </bean>


  		




  40
  
  
    
    


  		




  41
  
  
    
    <!-- This configures default properties, which can overridden with the file specified by the location property -->


  		




  42
  
  
    
    <bean id="hibernateProperties" 


  		




  43
  
  
    
        class="org.springframework.beans.factory.config.PropertiesFactoryBean">


  		




  44
  
  
    
        <property name="properties">


  		




  45
  
  
    
            <props>


  		




  46
  
  
    
                <prop key="hibernate.hbm2ddl.auto">validate</prop>


  		




  47
  
  
    
                <prop key="hibernate.dialect">org.hibernate.dialect.MySQLDialect</prop>


  		




  48
  
  
    
                <prop key="hibernate.cache.provider_class">org.hibernate.cache.NoCacheProvider</prop>


  		




  49
  
  
    
                <prop key="hibernate.show_sql">true</prop>


  		




  50
  
  
    
                <prop key="hibernate.format_sql">false</prop>


  		




  51
  
  
    
            </props>


  		




  52
  
  
    
        </property>


  		




  53
  
  
    
    </bean>


  		




  54
  
  
    

  		




  55
  
  
    
</beans>


  		












  

    
      vibrant-webapp/src/main/webapp/WEB-INF/datasources/empty-default-datasource.xml
    
  





  1
  
  
    
<?xml version="1.0" encoding="UTF-8"?>


  		




  2
  
  
    
<beans xmlns="http://www.springframework.org/schema/beans"


  		




  3
  
  
    
	xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"


  		




  4
  
  
    
	xmlns:context="http://www.springframework.org/schema/context"


  		




  5
  
  
    
	xsi:schemaLocation="http://www.springframework.org/schema/beans


  		




  6
  
  
    
    http://www.springframework.org/schema/beans/spring-beans-2.5.xsd


  		




  7
  
  
    
    http://www.springframework.org/schema/context


  		




  8
  
  
    
    http://www.springframework.org/schema/context/spring-context-2.5.xsd">


  		




  9
  
  
    

  		




  10
  
  
    
    <bean id="dataSource"  lazy-init="true" class="eu.etaxonomy.cdm.database.UpdatableRoutingDataSource">


  		




  11
  
  
    
    	<property name="targetDataSources">


  		




  12
  
  
    
	      <map key-type="java.lang.String">


  		




  13
  
  
    
	         <entry key="empty_default" value-ref="empty_defaultDataSource"/>


  		




  14
  
  
    
	      </map>


  		




  15
  
  
    
   		</property>


  		




  16
  
  
    
   		<property name="defaultTargetDataSource" ref="empty_defaultDataSource"/>


  		




  17
  
  
    
   </bean>


  		




  18
  
  
    

  		




  19
  
  
    
    <bean id="empty_defaultDataSource"  lazy-init="true" class="org.springframework.jdbc.datasource.DriverManagerDataSource">


  		




  20
  
  
    
        <property name="driverClassName" value="com.mysql.jdbc.Driver"/>


  		




  21
  
  
    
        <property name="username" value="${local.usr}"/>


  		




  22
  
  
    
        <property name="password" value="${local.pwd}"/>


  		




  23
  
  
    
        <property name="url" value="jdbc:mysql://${local.host}/cdm_empty_default"/>


  		




  24
  
  
    
    </bean>


  		




  25
  
  
    
    


  		




  26
  
  
    
    <!-- This configures default properties, which can overridden with the file specified by the location property -->


  		




  27
  
  
    
    <bean id="hibernateProperties" 


  		




  28
  
  
    
        class="org.springframework.beans.factory.config.PropertiesFactoryBean">


  		




  29
  
  
    
        <property name="properties">


  		




  30
  
  
    
            <props>


  		




  31
  
  
    
                <prop key="hibernate.hbm2ddl.auto">validate</prop>


  		




  32
  
  
    
                <prop key="hibernate.dialect">org.hibernate.dialect.MySQLDialect</prop>


  		




  33
  
  
    
                <prop key="hibernate.cache.provider_class">org.hibernate.cache.NoCacheProvider</prop>


  		




  34
  
  
    
                <prop key="hibernate.show_sql">false</prop>


  		




  35
  
  
    
                <prop key="hibernate.format_sql">false</prop>


  		




  36
  
  
    
            </props>


  		




  37
  
  
    
        </property>


  		




  38
  
  
    
    </bean>


  		




  39
  
  
    

  		




  40
  
  
    
</beans>


  		












  

    
      vibrant-webapp/src/main/webapp/WEB-INF/datasources/p6spy.xml
    
  





  1
  
  
    
<?xml version="1.0" encoding="UTF-8"?>


  		




  2
  
  
    
<beans xmlns="http://www.springframework.org/schema/beans"


  		




  3
  
  
    
    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"


  		




  4
  
  
    
    xmlns:tx="http://www.springframework.org/schema/tx"


  		




  5
  
  
    
    xmlns:context="http://www.springframework.org/schema/context"


  		




  6
  
  
    
    xsi:schemaLocation="http://www.springframework.org/schema/beans   http://www.springframework.org/schema/beans/spring-beans-2.5.xsd


  		




  7
  
  
    
    http://www.springframework.org/schema/context   http://www.springframework.org/schema/context/spring-context-2.5.xsd


  		




  8
  
  
    
    http://www.springframework.org/schema/tx   http://www.springframework.org/schema/tx/spring-tx-2.5.xsd


  		




  9
  
  
    
    ">


  		




  10
  
  
    

  		




  11
  
  
    
    <!-- 


  		




  12
  
  
    
		see also /cdmlib-remote/src/main/resources/spy.properties in which P6Spy is configured 


  		




  13
  
  
    
		important properities are:


  		




  14
  
  
    
			realdriver=com.mysql.jdbc.Driver


  		




  15
  
  
    
			log4j.logger.p6spy=INFO,STDOUT


  		




  16
  
  
    
			log4j.logger.p6spy=INFO, SQLPROFILER_CLIENT


  		




  17
  
  
    
			log4j.appender.SQLPROFILER_CLIENT.RemoteHost = 


  		




  18
  
  
    
			


  		




  19
  
  
    
		you can use sqlprofiler as SQLPROFILER_CLIENT


  		




  20
  
  
    
	-->


  		




  21
  
  
    
    <bean id="dataSource"  lazy-init="true" class="org.springframework.jdbc.datasource.DriverManagerDataSource">


  		




  22
  
  
    
        <property name="driverClassName" value="com.p6spy.engine.spy.P6SpyDriver"/>


  		




  23
  
  
    
    	<property name="username" value="${local.usr}"/>


  		




  24
  
  
    
        <property name="password" value="${local.pwd}"/>


  		




  25
  
  
    
        <property name="url" value="jdbc:mysql://${local.host}/cdm_local_cichorieae"/>


  		




  26
  
  
    
    </bean>


  		




  27
  
  
    
    


  		




  28
  
  
    
 


  		




  29
  
  
    
    <!-- This configures default properties, which can overridden with the file specified by the location property -->


  		




  30
  
  
    
    <bean id="hibernateProperties" 


  		




  31
  
  
    
        class="org.springframework.beans.factory.config.PropertiesFactoryBean">


  		




  32
  
  
    
        <property name="properties">


  		




  33
  
  
    
            <props>


  		




  34
  
  
    
                <prop key="hibernate.hbm2ddl.auto">validate</prop>


  		




  35
  
  
    
                <prop key="hibernate.dialect">org.hibernate.dialect.MySQLDialect</prop>


  		




  36
  
  
    
                <prop key="hibernate.cache.provider_class">org.hibernate.cache.NoCacheProvider</prop>


  		




  37
  
  
    
                <prop key="hibernate.show_sql">false</prop>


  		




  38
  
  
    
                <prop key="hibernate.format_sql">false</prop>


  		




  39
  
  
    
            </props>


  		




  40
  
  
    
        </property>


  		




  41
  
  
    
    </bean>


  		




  42
  
  
    

  		




  43
  
  
    

  		




  44
  
  
    
</beans>


  		












  

    
      vibrant-webapp/src/main/webapp/WEB-INF/datasources/routing-datasource.xml
    
  





  1
  
  
    
<?xml version="1.0" encoding="UTF-8"?>


  		




  2
  
  
    
<beans xmlns="http://www.springframework.org/schema/beans"


  		




  3
  
  
    
	xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"


  		




  4
  
  
    
	xmlns:context="http://www.springframework.org/schema/context"


  		




  5
  
  
    
	xsi:schemaLocation="http://www.springframework.org/schema/beans


  		




  6
  
  
    
    http://www.springframework.org/schema/beans/spring-beans-2.5.xsd


  		




  7
  
  
    
    http://www.springframework.org/schema/context


  		




  8
  
  
    
    http://www.springframework.org/schema/context/spring-context-2.5.xsd">


  		




  9
  
  
    
    


  		




  10
  
  
    
    


  		




  11
  
  
    
    <bean id="dataSource"  lazy-init="true" class="eu.etaxonomy.cdm.database.SelectableDataSource">


  		




  12
  
  
    
    	<!--  The property beanDefinitionFile defaults to "datasources.xml" in {USER_HOME}./cdmLibrary 


  		




  13
  
  
    
    	


  		




  14
  
  
    
    	WARNING !!!


  		




  15
  
  
    
    	The beanDefinitionFile now mus be configured in 


  		




  16
  
  
    
    	eu.etaxonomy.cdm.database.DataSourceBeanLoader


  		




  17
  
  
    
    	


  		




  18
  
  
    
    	-->


  		




  19
  
  
    
    	<!--  The property defaultDatasourceName defaults to "default" 


  		




  20
  
  
    
    	<property name="beanDefinitionFile" value="datasources-p6spy.xml" />


  		




  21
  
  
    
    	<property name="defaultDatasourceName" value="cichorieae" />


  		




  22
  
  
    
    	-->


  		




  23
  
  
    
    </bean>


  		




  24
  
  
    
    


  		




  25
  
  
    
    <!-- This configures default properties, which can overridden with the file specified by the location property -->


  		




  26
  
  
    
    <bean id="hibernateProperties" class="org.springframework.beans.factory.config.PropertiesFactoryBean">


  		




  27
  
  
    
        <property name="properties">


  		




  28
  
  
    
            <props>


  		




  29
  
  
    
             <!-- 


  		




  30
  
  
    
                  Configuring the C3P0ConnectionProvider


  		




  31
  
  
    
                  ========================================


  		




  32
  
  
    
                  see http://www.mchange.com/projects/c3p0/index.html#hibernate-specific


  		




  33
  
  
    
                  and also org.springframework.orm.hibernate3.AbstractSessionFactoryBean.setDataSource(DataSource dataSource)


  		




  34
  
  
    
                  


  		




  35
  
  
    
                  IMPORTANT: 


  		




  36
  
  
    
                  Because of the constraint (1) the org.hibernate.connection.C3P0ConnectionProvider anc not be used 


  		




  37
  
  
    
                  for the cdm library because it requires the dataSource bean in some cases. 


  		




  38
  
  
    
                  


  		




  39
  
  
    
				          (1)


  		




  40
  
  
    
				          Do NOT specify the dataSource in the sessionFactory for example in the 


  		




  41
  
  
    
				          org.springframework.orm.hibernate3.LocalSessionFactoryBean


  		




  42
  
  
    
				          !!!==> If *dataSource* is set, this will override corresponding settings in Hibernate properties.!!!


  		




  43
  
  
    
 						  If this is set, the Hibernate settings should not define a connection provider to 


  		




  44
  
  
    
 					      avoid meaningless double configuration.


  		




  45
  
  
    
				          (2)


  		




  46
  
  
    
				          Hibernate uses the hibernate.c3p0.max_size property to determine if c3p0


  		




  47
  
  
    
                          is begin used.  Therefore the max_size property MUST be set. - maybe not need in hibernate 3.4 +


  		




  48
  
  
    
                          (3) If you are using Hibernate's C3P0ConnectionProvider you must set the following properties 


  		




  49
  
  
    
                          in your hibernate configuration, using hibernate-specific configuration keys. 


  		




  50
  
  
    
                          All other properties must be defined as usual in a c3p0.properties file. 


  		




  51
  
  
    
                          This is confusing, and will hopefully be simplified some time in the future, but for now... 


  		




  52
  
  
    
                          


  		




  53
  
  
    
                          	hibernate.c3p0.acquire_increment


  		




  54
  
  
    
							hibernate.c3p0.idle_test_period


  		




  55
  
  
    
							hibernate.c3p0.timeout


  		




  56
  
  
    
							hibernate.c3p0.max_size


  		




  57
  
  
    
							hibernate.c3p0.max_statements


  		




  58
  
  
    
							hibernate.c3p0.min_size


  		




  59
  
  
    
							hibernate.c3p0.validate 


  		




  60
  
  
    
				      -->


  		




  61
  
  
    
              <prop key="hibernate.hbm2ddl.auto">update</prop>


  		




  62
  
  
    
              <prop key="hibernate.dialect">org.hibernate.dialect.MySQLDialect</prop>


  		




  63
  
  
    
              <prop key="hibernate.cache.provider_class">org.hibernate.cache.NoCacheProvider</prop>


  		




  64
  
  
    
              <prop key="hibernate.show_sql">false</prop>


  		




  65
  
  
    
              <prop key="hibernate.format_sql">false</prop>


  		




  66
  
  
    
              <prop key="hibernate.search.default.indexBase">${user.home}/.cdmLibrary/</prop>


  		




  67
  
  
    
            </props>


  		




  68
  
  
    
        </property>


  		




  69
  
  
    
    </bean>


  		




  70
  
  
    

  		




  71
  
  
    
</beans>


  		












  

    
      vibrant-webapp/src/main/webapp/WEB-INF/json-views.xml
    
  





  1
  
  
    
<?xml version="1.0" encoding="UTF-8"?>


  		




  2
  
  
    
<beans xmlns="http://www.springframework.org/schema/beans"


  		




  3
  
  
    
    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"


  		




  4
  
  
    
    xsi:schemaLocation="http://www.springframework.org/schema/beans


  		




  5
  
  
    
    http://www.springframework.org/schema/beans/spring-beans-2.5.xsd">


  		




  6
  
  
    

  		




  7
  
  
    
    <!--


  		




  8
  
  
    
        ===============================================================


  		




  9
  
  
    
        This is the configuration file for the


  		




  10
  
  
    
        eu.etaxonomy.cdm.remote.view.PatternViewResolver


  		




  11
  
  
    
        ===============================================================


  		




  12
  
  
    

  		




  13
  
  
    
      - bean names are ant style patterns


  		




  14
  
  
    
      - the eu.etaxonomy.cdm.remote.view.PatternViewResolver


  		




  15
  
  
    
        must be used to resolve patterns used as bean names


  		




  16
  
  
    
    -->


  		




  17
  
  
    

  		




  18
  
  
    
    <!-- entity services -->


  		




  19
  
  
    
    <bean name="**/*" class="eu.etaxonomy.cdm.remote.view.JsonView">


  		




  20
  
  
    
      <property name="jsonConfig" ref="jsonConfig" />


  		




  21
  
  
    
    </bean>


  		




  22
  
  
    

  		




  23
  
  
    
    <!-- taxonomy service -->


  		




  24
  
  
    
    <bean name="**/classification **/classification/* **/classification/**/*" class="eu.etaxonomy.cdm.remote.view.JsonView">


  		




  25
  
  
    
        <property name="jsonConfig" ref="jsonConfigClassification" />


  		




  26
  
  
    
    </bean>


  		




  27
  
  
    

  		




  28
  
  
    
    <!-- portal service -->


  		








... This diff was truncated because it exceeds the maximum size that can be displayed.



Also available in:  Unified diff