Revision 7115f486
Added by Andreas Müller almost 9 years ago
| app-import/src/main/java/eu/etaxonomy/cdm/io/redlist/bfnXml/BfnXmlImportMetaData.java | ||
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/** |
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* Copyright (C) 2007 EDIT |
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* European Distributed Institute of Taxonomy
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* European Distributed Institute of Taxonomy |
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* http://www.e-taxonomy.eu |
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*
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* |
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* The contents of this file are subject to the Mozilla Public License Version 1.1 |
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* See LICENSE.TXT at the top of this package for the full license terms. |
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*/ |
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package eu.etaxonomy.cdm.io.redlist.bfnXml; |
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import java.util.ArrayList; |
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import java.util.Arrays; |
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import java.util.List; |
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import java.util.UUID; |
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import javax.management.ObjectInstance; |
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import org.apache.commons.lang.StringUtils; |
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import org.apache.log4j.Logger; |
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import org.hibernate.id.UUIDGenerator; |
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import org.jdom.Element; |
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import org.jdom.Namespace; |
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import org.springframework.stereotype.Component; |
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import org.springframework.transaction.TransactionStatus; |
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import eu.etaxonomy.cdm.api.service.IClassificationService; |
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import eu.etaxonomy.cdm.api.service.IDescriptionService; |
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import eu.etaxonomy.cdm.api.service.IFeatureNodeService; |
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import eu.etaxonomy.cdm.api.service.ITaxonService; |
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import eu.etaxonomy.cdm.api.service.ITermService; |
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import eu.etaxonomy.cdm.api.service.IVocabularyService; |
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import eu.etaxonomy.cdm.common.ResultWrapper; |
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import eu.etaxonomy.cdm.common.XmlHelp; |
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import eu.etaxonomy.cdm.io.common.ICdmIO; |
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import eu.etaxonomy.cdm.io.common.ImportHelper; |
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import eu.etaxonomy.cdm.io.common.MapWrapper; |
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import eu.etaxonomy.cdm.io.common.Source; |
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import eu.etaxonomy.cdm.model.common.DefinedTermBase; |
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import eu.etaxonomy.cdm.model.common.Language; |
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import eu.etaxonomy.cdm.model.common.OrderedTermVocabulary; |
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import eu.etaxonomy.cdm.model.common.TermType; |
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import eu.etaxonomy.cdm.model.common.TermVocabulary; |
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import eu.etaxonomy.cdm.model.common.TimePeriod; |
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import eu.etaxonomy.cdm.model.common.VocabularyEnum; |
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import eu.etaxonomy.cdm.model.description.CategoricalData; |
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import eu.etaxonomy.cdm.model.description.DescriptionBase; |
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import eu.etaxonomy.cdm.model.description.DescriptionElementBase; |
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import eu.etaxonomy.cdm.model.description.Feature; |
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import eu.etaxonomy.cdm.model.description.FeatureNode; |
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import eu.etaxonomy.cdm.model.description.FeatureTree; |
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import eu.etaxonomy.cdm.model.description.State; |
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import eu.etaxonomy.cdm.model.description.StateData; |
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import eu.etaxonomy.cdm.model.name.NomenclaturalCode; |
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import eu.etaxonomy.cdm.model.name.NonViralName; |
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import eu.etaxonomy.cdm.model.name.Rank; |
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import eu.etaxonomy.cdm.model.name.TaxonNameBase; |
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import eu.etaxonomy.cdm.model.reference.Reference; |
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import eu.etaxonomy.cdm.model.reference.ReferenceFactory; |
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import eu.etaxonomy.cdm.model.taxon.Classification; |
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import eu.etaxonomy.cdm.model.taxon.Synonym; |
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import eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType; |
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import eu.etaxonomy.cdm.model.taxon.Taxon; |
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import eu.etaxonomy.cdm.model.taxon.TaxonBase; |
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import eu.etaxonomy.cdm.persistence.dao.description.IFeatureDao; |
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import eu.etaxonomy.cdm.strategy.exceptions.UnknownCdmTypeException; |
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import eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl; |
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import eu.etaxonomy.cdm.strategy.parser.ParserProblem; |
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import eu.etaxonomy.cdm.strategy.parser.TimePeriodParser; |
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/** |
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*
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* |
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* @author a.oppermann |
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* @date 04.07.2013 |
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* |
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@Override |
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public void doInvoke(BfnXmlImportState state){
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logger.warn("start import MetaData...");
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ResultWrapper<Boolean> success = ResultWrapper.NewInstance(true); |
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BfnXmlImportConfigurator config = state.getConfig(); |
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sourceFileName = elDataSet.getAttributeValue("source");
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debVersion = elDataSet.getAttributeValue("debversion");
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timeStamp = elDataSet.getAttributeValue("timestamp");
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Reference sourceReference = ReferenceFactory.newGeneric(); |
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Reference<?> sourceReference = ReferenceFactory.newGeneric();
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sourceReference.setTitle(sourceFileName); |
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TimePeriod parsedTimePeriod = TimePeriodParser.parseString(timeStamp); |
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sourceReference.setDatePublished(parsedTimePeriod); |
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state.setCompleteSourceRef(sourceReference); |
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} |
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List contentXML = elDataSet.getContent(); |
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List<?> contentXML = elDataSet.getContent();
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Element currentElement = null; |
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for(Object object:contentXML){
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if(object instanceof Element){
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currentElement = (Element)object; |
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if(currentElement.getName().equalsIgnoreCase("METADATEN")){
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TransactionStatus tx = startTransaction(); |
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String bfnElementName = "METADATEN"; |
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List<Element> elMetaDataList = (List<Element>)currentElement.getChildren(); |
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@SuppressWarnings("unchecked")
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List<Element> elMetaDataList = currentElement.getChildren(); |
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//for each taxonName |
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for (Element elMetaData : elMetaDataList){
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if( elMetaData.getAttributeValue("standardname").equalsIgnoreCase("KurzLit_A")){
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List<Element> children = (List<Element>)elMetaData.getChildren(); |
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@SuppressWarnings("unchecked")
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List<Element> children = elMetaData.getChildren(); |
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String kurzlitA = children.get(0).getTextNormalize(); |
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Reference sourceReference = ReferenceFactory.newGeneric(); |
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Reference<?> sourceReference = ReferenceFactory.newGeneric();
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sourceReference.setTitle(kurzlitA); |
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state.setFirstListSecRef(sourceReference); |
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} |
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else if( elMetaData.getAttributeValue("standardname").equalsIgnoreCase("Klassifikation_A")){
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List<Element> children = (List<Element>)elMetaData.getChildren(); |
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@SuppressWarnings("unchecked")
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List<Element> children = elMetaData.getChildren(); |
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String klassifikation_A = children.get(0).getTextNormalize(); |
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state.setFirstClassificationName(klassifikation_A); |
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}
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} |
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else if( elMetaData.getAttributeValue("standardname").equalsIgnoreCase("KurzLit_B")){
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List<Element> children = (List<Element>)elMetaData.getChildren(); |
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@SuppressWarnings("unchecked")
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List<Element> children = elMetaData.getChildren(); |
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String kurzlitB = children.get(0).getTextNormalize(); |
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Reference sourceReference = ReferenceFactory.newGeneric(); |
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Reference<?> sourceReference = ReferenceFactory.newGeneric();
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sourceReference.setTitle(kurzlitB); |
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state.setSecondListSecRef(sourceReference); |
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} |
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else if( elMetaData.getAttributeValue("standardname").equalsIgnoreCase("Klassifikation_B")){
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List<Element> children = (List<Element>)elMetaData.getChildren(); |
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@SuppressWarnings("unchecked")
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List<Element> children = elMetaData.getChildren(); |
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String klassifikation_B = children.get(0).getTextNormalize(); |
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state.setSecondClassificationName(klassifikation_B); |
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} |
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} |
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logger.warn("end import MetaData ...");
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commitTransaction(tx); |
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if (!success.getValue()){
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state.setUnsuccessfull(); |
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} |
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//FIXME: Only take the first RoteListeData Features |
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return; |
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} |
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} |
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@Override |
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protected boolean isIgnore(BfnXmlImportState state) {
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return ! state.getConfig().isDoTaxonNames();
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return ! state.getConfig().isDoMetaData();
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} |
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} |
Also available in: Unified diff
Cleanup BfnXmlImport