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// $Id$
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/**
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* Copyright (C) 2009 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.xper;
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import java.util.List;
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import java.util.UUID;
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import org.apache.log4j.Logger;
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import eu.etaxonomy.cdm.model.description.Feature;
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import eu.etaxonomy.cdm.model.description.FeatureTree;
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import eu.etaxonomy.cdm.model.description.State;
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import eu.etaxonomy.cdm.model.description.WorkingSet;
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import fr_jussieu_snv_lis.XPApp;
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import fr_jussieu_snv_lis.base.Base;
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import fr_jussieu_snv_lis.base.ControlerBase;
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import fr_jussieu_snv_lis.base.Group;
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import fr_jussieu_snv_lis.base.IBase;
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import fr_jussieu_snv_lis.base.IControlerBase;
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import fr_jussieu_snv_lis.base.Individual;
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import fr_jussieu_snv_lis.base.Mode;
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import fr_jussieu_snv_lis.base.Variable;
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/**
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* @author a.mueller
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* @date 12.04.2011
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*
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*/
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public class CdmXperBaseControler extends ControlerBase implements IControlerBase {
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private static final Logger logger = Logger.getLogger(CdmXperBaseControler.class);
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// private IBase base;
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private CdmXperAdapter cdmXperAdapter;
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public CdmXperBaseControler(BaseCdm base, CdmXperAdapter cdmXperAdapter) {
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super(base);
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this.cdmXperAdapter = cdmXperAdapter;
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// this.base = base;
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base.setBaseControler(this);
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}
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protected CdmXperAdapter getAdapter() {
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return cdmXperAdapter;
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}
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private WorkingSet getWorkingSet() {
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return cdmXperAdapter.getWorkingSet();
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}
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private FeatureTree getFeatureTree() {
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return getWorkingSet().getDescriptiveSystem();
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}
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public void loadFeatures() {
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this.cdmXperAdapter.loadFeatures();
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}
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//*********************** IControlerBase ********************************************/
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#createBase(java.lang.String, java.lang.String)
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*/
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@Override
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public void createBase(String path, String name) throws Exception {
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//TODO
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throw new RuntimeException("A new base can not be created in an external base controler");
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#createBase(java.lang.String)
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*/
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@Override
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public void createBase(String name) throws Exception {
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//TODO
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throw new RuntimeException("A new base can not be opened in an external base controler");
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#setBase(fr_jussieu_snv_lis.base.Base)
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*/
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@Override
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public void setBase(Base b) {
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logger.warn("Base is newly defined. This may lead to errors as controler base is a CdmXperBaseControler");
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this.base = b;
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#getBase()
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*/
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@Override
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public IBase getBase() {
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return base;
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#getBaseName()
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*/
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@Override
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public String getBaseName() {
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return base.getName();
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#closeBase()
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*/
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@Override
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public void closeBase() {
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logger.warn("closeBase Not yet implemented");
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#createNewGroup(java.lang.String)
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*/
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@Override
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public Group createNewGroup(String name) {
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logger.warn("createNewGroup Not yet implemented");
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return null;
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#addGroup(fr_jussieu_snv_lis.base.Group)
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*/
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@Override
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public boolean addGroup(Group group) {
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logger.warn("addGroup Not yet implemented");
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return false;
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#addGroupToBase(fr_jussieu_snv_lis.base.Group, fr_jussieu_snv_lis.base.IBase)
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*/
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@Override
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public boolean addGroupToBase(Group group, IBase b) {
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logger.warn("addGroupToBase Not yet implemented");
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return false;
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#addGroupAndVariablesToBase(fr_jussieu_snv_lis.base.Group, fr_jussieu_snv_lis.base.IBase)
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*/
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@Override
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public boolean addGroupAndVariablesToBase(Group group, IBase b) {
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logger.warn("addGroupAndVariablesToBase Not yet implemented");
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return false;
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#addGroupAt(int, fr_jussieu_snv_lis.base.Group)
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*/
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@Override
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public void addGroupAt(int i, Group g) {
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logger.warn("addGroupAt Not yet implemented");
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#addGroupToBaseAt(fr_jussieu_snv_lis.base.Group, fr_jussieu_snv_lis.base.IBase, int)
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*/
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@Override
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public void addGroupToBaseAt(Group g, IBase b, int i) {
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logger.warn("addGroupToBaseAt Not yet implemented");
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#deleteGroupFromBase(fr_jussieu_snv_lis.base.Group, fr_jussieu_snv_lis.base.IBase)
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*/
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@Override
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public void deleteGroupFromBase(Group g, IBase b) {
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logger.warn("deleteGroupFromBase Not yet implemented");
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#deleteGroups(java.lang.Object[])
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*/
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@Override
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public void deleteGroups(Object[] tab) {
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logger.warn("deleteGroups Not yet implemented");
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#deleteGroup(fr_jussieu_snv_lis.base.Group)
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*/
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@Override
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public void deleteGroup(Group g) {
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logger.warn("deleteGroup Not yet implemented");
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#deleteGroupFromVariable(fr_jussieu_snv_lis.base.Variable, fr_jussieu_snv_lis.base.Group)
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*/
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@Override
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public void deleteGroupFromVariable(Variable v, Group g) {
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logger.warn("deleteGroupFromVariable Not yet implemented");
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#deleteGroupFromVariables(java.lang.Object[], fr_jussieu_snv_lis.base.Group)
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*/
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@Override
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public void deleteGroupFromVariables(Object[] tab, Group g) {
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logger.warn("deleteGroupFromVariables Not yet implemented");
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#deleteAllGroups(fr_jussieu_snv_lis.base.IBase)
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*/
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@Override
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public void deleteAllGroups(IBase b) {
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logger.warn("deleteAllGroups Not yet implemented");
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#getGroupsNoBelongingToVariable(fr_jussieu_snv_lis.base.Variable)
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*/
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@Override
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public List<Group> getGroupsNoBelongingToVariable(Variable v) {
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logger.warn("getGroupsNoBelongingToVariable Not yet implemented");
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return null;
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#getGroupsNoBelongingToVariables(java.lang.Object[])
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*/
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@Override
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public List<Group> getGroupsNoBelongingToVariables(Variable[] tab) {
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logger.warn("getGroupsNoBelongingToVariables Not yet implemented");
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return null;
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#getGroupsBelongingToVariable(fr_jussieu_snv_lis.base.Variable)
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*/
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@Override
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public List<Group> getGroupsBelongingToVariable(Variable v) {
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logger.warn("getGroupsBelongingToVariable Not yet implemented");
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return null;
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#getGroupsBelongingToVariables(java.lang.Object[])
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*/
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@Override
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public List<Group> getGroupsBelongingToVariables(Variable[] tab) {
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logger.warn("getGroupsBelongingToVariables Not yet implemented");
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return null;
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#getAllGroups()
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*/
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@Override
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public List<Group> getAllGroups() {
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return base.getGroups();
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#findGroupByName(java.lang.String)
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*/
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@Override
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public Group findGroupByName(String n) {
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logger.warn("findGroupByName Not yet implemented");
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return null;
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#checkExistanceGroup()
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*/
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@Override
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public boolean checkExistanceGroup() {
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logger.warn("checkExistanceGroup Not yet implemented");
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return false;
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#addGroupToVariableAt(fr_jussieu_snv_lis.base.Group, fr_jussieu_snv_lis.base.Variable, int)
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*/
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@Override
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public void addGroupToVariableAt(Group g, Variable v, int i) {
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logger.warn("addGroupToVariableAt Not yet implemented");
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#addGroupToVariable(fr_jussieu_snv_lis.base.Group, fr_jussieu_snv_lis.base.Variable)
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*/
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@Override
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public void addGroupToVariable(Group g, Variable v) {
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logger.warn("addGroupToVariable Not yet implemented");
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#addGroupToVariables(fr_jussieu_snv_lis.base.Group, java.lang.Object[])
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*/
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@Override
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public void addGroupToVariables(Group g, Object[] al) {
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logger.warn("addGroupToVariables Not yet implemented");
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#addVariableToGroups(fr_jussieu_snv_lis.base.Variable, java.util.List)
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*/
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@Override
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public void addVariableToGroups(Variable v, List<Group> al) {
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logger.warn("addVariableToGroups Not yet implemented");
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#checkExistanceGroup(java.lang.String)
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*/
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@Override
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public boolean checkExistanceGroup(String s) {
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logger.warn("checkExistanceGroup Not yet implemented");
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return false;
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#checkExistanceGroup(fr_jussieu_snv_lis.base.Variable, fr_jussieu_snv_lis.base.Group)
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*/
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@Override
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public boolean checkExistanceGroup(Variable var, Group g) {
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logger.warn("checkExistanceGroup Not yet implemented");
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return false;
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#findModeByName(java.lang.String, fr_jussieu_snv_lis.base.Variable)
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*/
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@Override
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public Mode findModeByName(String str, Variable var) {
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logger.warn("findModeByName Not yet implemented");
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return null;
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#addModeToVariable(fr_jussieu_snv_lis.base.Mode, fr_jussieu_snv_lis.base.Variable)
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*/
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@Override
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public boolean addModeToVariable(Mode m, Variable v) {
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return super.addModeToVariable(m, v);
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#addModeToVariableAt(fr_jussieu_snv_lis.base.Mode, fr_jussieu_snv_lis.base.Variable, int)
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*/
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@Override
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public void addModeToVariableAt(Mode m, Variable v, int i) {
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logger.warn("addModeToVariableAt Not yet implemented");
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#moveUpModeFromVariable(fr_jussieu_snv_lis.base.Variable, fr_jussieu_snv_lis.base.Mode)
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*/
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@Override
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public void moveUpModeFromVariable(Variable v, Mode m) {
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logger.warn("moveUpModeFromVariable Not yet implemented");
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#moveDownModeFromVariable(fr_jussieu_snv_lis.base.Variable, fr_jussieu_snv_lis.base.Mode)
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*/
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@Override
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public void moveDownModeFromVariable(Variable v, Mode m) {
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logger.warn("moveDownModeFromVariable Not yet implemented");
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#deleteModeFromVariable(fr_jussieu_snv_lis.base.Variable, fr_jussieu_snv_lis.base.Mode)
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*/
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@Override
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public void deleteModeFromVariable(Variable v, Mode m) {
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logger.warn("deleteModeFromVariable Not yet implemented");
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#fusionModeFromvariable(fr_jussieu_snv_lis.base.Variable, java.lang.Object[])
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*/
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@Override
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public Mode fusionModeFromvariable(Variable var, Object[] tab) {
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logger.warn("fusionModeFromvariable Not yet implemented");
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return null;
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}
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/* (non-Javadoc)
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* @see fr_jussieu_snv_lis.base.IControlerBase#checkExistanceMode(fr_jussieu_snv_lis.base.Variable, java.lang.String)
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*/
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@Override
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public boolean checkExistanceMode(Variable v, String s) {
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logger.warn("checkExistanceMode only implemented as super");
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413
|
return super.checkExistanceMode(v, s);
|
414
|
}
|
415
|
|
416
|
/* (non-Javadoc)
|
417
|
* @see fr_jussieu_snv_lis.base.IControlerBase#checkExistanceMode(fr_jussieu_snv_lis.base.Individual, fr_jussieu_snv_lis.base.Variable, java.lang.String)
|
418
|
*/
|
419
|
@Override
|
420
|
public boolean checkExistanceMode(Individual ind, Variable var, String s) {
|
421
|
logger.warn("checkExistanceMode Not yet implemented");
|
422
|
return false;
|
423
|
}
|
424
|
|
425
|
/* (non-Javadoc)
|
426
|
* @see fr_jussieu_snv_lis.base.IControlerBase#matchModes(fr_jussieu_snv_lis.base.Individual, fr_jussieu_snv_lis.base.Variable, java.util.List, int)
|
427
|
*/
|
428
|
@Override
|
429
|
public boolean matchModes(Individual ind, Variable var, List<Mode> modes,
|
430
|
int operator) {
|
431
|
logger.warn("matchModes Not yet implemented");
|
432
|
return false;
|
433
|
}
|
434
|
|
435
|
/* (non-Javadoc)
|
436
|
* @see fr_jussieu_snv_lis.base.IControlerBase#matchNumValue(fr_jussieu_snv_lis.base.Individual, fr_jussieu_snv_lis.base.Variable, java.lang.Double)
|
437
|
*/
|
438
|
@Override
|
439
|
public boolean matchNumValue(Individual ind, Variable var, Double value) {
|
440
|
logger.info("matchNumValue implemented by using super");
|
441
|
return super.matchNumValue(ind, var, value);
|
442
|
}
|
443
|
|
444
|
/* (non-Javadoc)
|
445
|
* @see fr_jussieu_snv_lis.base.IControlerBase#createNewMode(fr_jussieu_snv_lis.base.Variable, java.lang.String)
|
446
|
*/
|
447
|
@Override
|
448
|
public Mode createNewMode(Variable va, String name) {
|
449
|
Mode newMode = new Mode(name);
|
450
|
|
451
|
boolean hasChanged = addModeToVariable(newMode, va); // Add the new Mode to the list f Mode of the Variable
|
452
|
|
453
|
if (hasChanged){
|
454
|
XPApp.baseChanged = true;
|
455
|
}
|
456
|
Feature feature = getAdapter().getFeature(va);
|
457
|
getAdapter().saveNewState(newMode, feature);
|
458
|
return newMode;
|
459
|
}
|
460
|
|
461
|
/* (non-Javadoc)
|
462
|
* @see fr_jussieu_snv_lis.base.IControlerBase#controlModeExVariable(boolean, fr_jussieu_snv_lis.base.Variable, fr_jussieu_snv_lis.base.Mode)
|
463
|
*/
|
464
|
@Override
|
465
|
public void controlModeExVariable(boolean selected, Variable v,
|
466
|
Mode modeException) {
|
467
|
logger.warn("controlModeExVariable Not yet implemented");
|
468
|
|
469
|
}
|
470
|
|
471
|
/* (non-Javadoc)
|
472
|
* @see fr_jussieu_snv_lis.base.IControlerBase#deleteModeExFromVariable(fr_jussieu_snv_lis.base.Variable, fr_jussieu_snv_lis.base.Mode)
|
473
|
*/
|
474
|
@Override
|
475
|
public void deleteModeExFromVariable(Variable v, Mode m) {
|
476
|
logger.warn("deleteModeExFromVariable Not yet implemented");
|
477
|
|
478
|
}
|
479
|
|
480
|
/* (non-Javadoc)
|
481
|
* @see fr_jussieu_snv_lis.base.IControlerBase#checkExistIndividual()
|
482
|
*/
|
483
|
@Override
|
484
|
public boolean checkExistIndividual() {
|
485
|
logger.warn("checkExistIndividual Not yet implemented");
|
486
|
return false;
|
487
|
}
|
488
|
|
489
|
/* (non-Javadoc)
|
490
|
* @see fr_jussieu_snv_lis.base.IControlerBase#deleteIndividualFromBase(fr_jussieu_snv_lis.base.Individual, fr_jussieu_snv_lis.base.IBase)
|
491
|
*/
|
492
|
@Override
|
493
|
public void deleteIndividualFromBase(Individual ind, IBase b) {
|
494
|
logger.warn("deleteIndividualFromBase Not yet implemented");
|
495
|
|
496
|
}
|
497
|
|
498
|
/* (non-Javadoc)
|
499
|
* @see fr_jussieu_snv_lis.base.IControlerBase#deleteIndividual(fr_jussieu_snv_lis.base.Individual)
|
500
|
*/
|
501
|
@Override
|
502
|
public void deleteIndividual(Individual ind) {
|
503
|
logger.warn("deleteIndividual Not yet implemented");
|
504
|
|
505
|
}
|
506
|
|
507
|
/* (non-Javadoc)
|
508
|
* @see fr_jussieu_snv_lis.base.IControlerBase#addIndividual(fr_jussieu_snv_lis.base.Individual)
|
509
|
*/
|
510
|
@Override
|
511
|
public void addIndividual(Individual ind) {
|
512
|
super.addIndividual(ind);
|
513
|
}
|
514
|
|
515
|
/* (non-Javadoc)
|
516
|
* @see fr_jussieu_snv_lis.base.IControlerBase#addIndividualToBaseAt(fr_jussieu_snv_lis.base.Individual, fr_jussieu_snv_lis.base.IBase, int)
|
517
|
*/
|
518
|
@Override
|
519
|
public void addIndividualToBaseAt(Individual ind, IBase b, int i) {
|
520
|
logger.warn("addIndividualToBaseAt Not yet implemented");
|
521
|
|
522
|
}
|
523
|
|
524
|
/* (non-Javadoc)
|
525
|
* @see fr_jussieu_snv_lis.base.IControlerBase#findIndividualByName(java.lang.String)
|
526
|
*/
|
527
|
@Override
|
528
|
public Individual findIndividualByName(String ind) {
|
529
|
return super.findIndividualByName(ind);
|
530
|
}
|
531
|
|
532
|
/* (non-Javadoc)
|
533
|
* @see fr_jussieu_snv_lis.base.IControlerBase#checkExistanceOneIndividual(java.lang.String)
|
534
|
*/
|
535
|
@Override
|
536
|
public boolean checkExistanceOneIndividual(String s) {
|
537
|
logger.warn("checkExistanceOneIndividual Not yet implemented");
|
538
|
return false;
|
539
|
}
|
540
|
|
541
|
/* (non-Javadoc)
|
542
|
* @see fr_jussieu_snv_lis.base.IControlerBase#createNewIndividual(java.lang.String)
|
543
|
*/
|
544
|
@Override
|
545
|
public Individual createNewIndividual(String name) {
|
546
|
logger.warn("createNewIndividual Not yet implemented");
|
547
|
return null;
|
548
|
}
|
549
|
|
550
|
/* (non-Javadoc)
|
551
|
* @see fr_jussieu_snv_lis.base.IControlerBase#copyIndividual(fr_jussieu_snv_lis.base.Individual, java.lang.String)
|
552
|
*/
|
553
|
@Override
|
554
|
public Individual copyIndividual(Individual indtocopy, String name) {
|
555
|
logger.warn("copyIndividual Not yet implemented");
|
556
|
return null;
|
557
|
}
|
558
|
|
559
|
/* (non-Javadoc)
|
560
|
* @see fr_jussieu_snv_lis.base.IControlerBase#copyVariable(fr_jussieu_snv_lis.base.Variable, java.lang.String)
|
561
|
*/
|
562
|
@Override
|
563
|
public Variable copyVariable(Variable vartocopy, String name) {
|
564
|
logger.warn("copyVariable Not yet implemented");
|
565
|
return null;
|
566
|
}
|
567
|
|
568
|
/* (non-Javadoc)
|
569
|
* @see fr_jussieu_snv_lis.base.IControlerBase#mergeVariables(java.lang.Object[], java.lang.String)
|
570
|
*/
|
571
|
@Override
|
572
|
public Variable mergeVariables(Object[] tab, String name) {
|
573
|
logger.warn("mergeVariables Not yet implemented");
|
574
|
return null;
|
575
|
}
|
576
|
|
577
|
/* (non-Javadoc)
|
578
|
* @see fr_jussieu_snv_lis.base.IControlerBase#mergeIndividuals(java.lang.Object[], java.lang.String)
|
579
|
*/
|
580
|
@Override
|
581
|
public Individual mergeIndividuals(Object[] tab, String name) {
|
582
|
logger.warn("mergeIndividuals Not yet implemented");
|
583
|
return null;
|
584
|
}
|
585
|
|
586
|
/* (non-Javadoc)
|
587
|
* @see fr_jussieu_snv_lis.base.IControlerBase#controlModeIndVar(boolean, fr_jussieu_snv_lis.base.Variable, fr_jussieu_snv_lis.base.Individual, fr_jussieu_snv_lis.base.Mode)
|
588
|
*/
|
589
|
@Override
|
590
|
public void controlModeIndVar(boolean selected, Variable v, Individual i, Mode m) {
|
591
|
this.cdmXperAdapter.controlModeIndVar(selected, v, i, m);
|
592
|
super.controlModeIndVar(selected, v, i, m);
|
593
|
}
|
594
|
|
595
|
/* (non-Javadoc)
|
596
|
* @see fr_jussieu_snv_lis.base.IControlerBase#controlModeIndVarRec(boolean, fr_jussieu_snv_lis.base.Variable, fr_jussieu_snv_lis.base.Individual, fr_jussieu_snv_lis.base.Mode)
|
597
|
*/
|
598
|
@Override
|
599
|
public void controlModeIndVarRec(boolean selected, Variable v, Individual i, Mode m) {
|
600
|
logger.warn("controlModeIndVarRec Not yet implemented");
|
601
|
}
|
602
|
|
603
|
@Override
|
604
|
public void controlNumValue(Individual ind, Variable var, Double min,
|
605
|
Double max, Double mean, Double sd, Double umethLower,
|
606
|
Double umethUpper, Integer nSample) {
|
607
|
this.cdmXperAdapter.controlModeIndVar(ind, var, min, max, mean, sd,
|
608
|
umethLower, umethUpper, nSample);
|
609
|
super.controlNumValue(ind, var, min, max, mean, sd, umethLower, umethUpper,
|
610
|
nSample);
|
611
|
}
|
612
|
|
613
|
/* (non-Javadoc)
|
614
|
* @see fr_jussieu_snv_lis.base.IControlerBase#checkBadDescription(fr_jussieu_snv_lis.base.Variable, fr_jussieu_snv_lis.base.Individual)
|
615
|
*/
|
616
|
@Override
|
617
|
public void checkBadDescription(Variable var, Individual ind) {
|
618
|
logger.warn("checkBadDescription Not yet implemented");
|
619
|
|
620
|
}
|
621
|
|
622
|
/* (non-Javadoc)
|
623
|
* @see fr_jussieu_snv_lis.base.IControlerBase#checkingUnknown(fr_jussieu_snv_lis.base.Variable, fr_jussieu_snv_lis.base.Individual)
|
624
|
*/
|
625
|
@Override
|
626
|
public boolean checkingUnknown(Variable var, Individual ind) {
|
627
|
return super.checkingUnknown(var, ind);
|
628
|
}
|
629
|
|
630
|
/* (non-Javadoc)
|
631
|
* @see fr_jussieu_snv_lis.base.IControlerBase#checkUnknown(fr_jussieu_snv_lis.base.Variable, fr_jussieu_snv_lis.base.Individual, boolean, boolean)
|
632
|
*/
|
633
|
@Override
|
634
|
public void checkUnknown(Variable var, Individual ind, boolean b, boolean withDaughters) {
|
635
|
super.checkUnknown(var, ind, b, withDaughters);
|
636
|
}
|
637
|
|
638
|
/* (non-Javadoc)
|
639
|
* @see fr_jussieu_snv_lis.base.IControlerBase#checkUnknown(fr_jussieu_snv_lis.base.Variable, fr_jussieu_snv_lis.base.Individual[], boolean, boolean)
|
640
|
*/
|
641
|
@Override
|
642
|
public void checkUnknown(Variable var, Individual[] tab, boolean b, boolean withDaughters) {
|
643
|
super.checkUnknown(var, tab, b, withDaughters);
|
644
|
}
|
645
|
|
646
|
/* (non-Javadoc)
|
647
|
* @see fr_jussieu_snv_lis.base.IControlerBase#buildIndividualsBitSetMatrix()
|
648
|
*/
|
649
|
@Override
|
650
|
public void buildIndividualsBitSetMatrix() {
|
651
|
logger.warn("buildIndividualsBitSetMatrix Not yet implemented");
|
652
|
|
653
|
}
|
654
|
|
655
|
/* (non-Javadoc)
|
656
|
* @see fr_jussieu_snv_lis.base.IControlerBase#buildIndividualsIntegerBitMatrix()
|
657
|
*/
|
658
|
@Override
|
659
|
public void buildIndividualsIntegerBitMatrix() {
|
660
|
logger.warn("buildIndividualsIntegerBitMatrix Not yet implemented");
|
661
|
|
662
|
}
|
663
|
|
664
|
/* (non-Javadoc)
|
665
|
* @see fr_jussieu_snv_lis.base.IControlerBase#addVariable(fr_jussieu_snv_lis.base.Variable)
|
666
|
*/
|
667
|
@Override
|
668
|
public boolean addVariable(Variable variable) {
|
669
|
logger.warn("addVariable Not yet implemented");
|
670
|
return false;
|
671
|
}
|
672
|
|
673
|
/* (non-Javadoc)
|
674
|
* @see fr_jussieu_snv_lis.base.IControlerBase#addVariableToBase(fr_jussieu_snv_lis.base.Variable, fr_jussieu_snv_lis.base.IBase)
|
675
|
*/
|
676
|
@Override
|
677
|
public void addVariableToBase(Variable variable, IBase b) {
|
678
|
logger.warn("addVariableToBase Not yet implemented");
|
679
|
|
680
|
}
|
681
|
|
682
|
/* (non-Javadoc)
|
683
|
* @see fr_jussieu_snv_lis.base.IControlerBase#addMother(fr_jussieu_snv_lis.base.Variable, fr_jussieu_snv_lis.base.Variable)
|
684
|
*/
|
685
|
@Override
|
686
|
public boolean addMother(Variable current, Variable mother) {
|
687
|
logger.warn("addMother Not yet implemented");
|
688
|
return false;
|
689
|
}
|
690
|
|
691
|
/* (non-Javadoc)
|
692
|
* @see fr_jussieu_snv_lis.base.IControlerBase#removeMother(fr_jussieu_snv_lis.base.Variable)
|
693
|
*/
|
694
|
@Override
|
695
|
public void removeMother(Variable current) {
|
696
|
logger.warn("removeMother Not yet implemented");
|
697
|
|
698
|
}
|
699
|
|
700
|
/* (non-Javadoc)
|
701
|
* @see fr_jussieu_snv_lis.base.IControlerBase#changeMother(fr_jussieu_snv_lis.base.Variable, fr_jussieu_snv_lis.base.Variable)
|
702
|
*/
|
703
|
@Override
|
704
|
public void changeMother(Variable current, Variable mother) {
|
705
|
logger.warn("changeMother Not yet implemented");
|
706
|
|
707
|
}
|
708
|
|
709
|
/* (non-Javadoc)
|
710
|
* @see fr_jussieu_snv_lis.base.IControlerBase#checkExistVariable()
|
711
|
*/
|
712
|
@Override
|
713
|
public boolean checkExistVariable() {
|
714
|
logger.warn("checkExistVariable Not yet implemented");
|
715
|
return false;
|
716
|
}
|
717
|
|
718
|
/* (non-Javadoc)
|
719
|
* @see fr_jussieu_snv_lis.base.IControlerBase#checkExistVariable(fr_jussieu_snv_lis.base.Variable)
|
720
|
*/
|
721
|
@Override
|
722
|
public boolean checkExistVariable(Variable v) {
|
723
|
logger.warn("checkExistVariable Not yet implemented");
|
724
|
return false;
|
725
|
}
|
726
|
|
727
|
/* (non-Javadoc)
|
728
|
* @see fr_jussieu_snv_lis.base.IControlerBase#findVariableByName(java.lang.String)
|
729
|
*/
|
730
|
@Override
|
731
|
public Variable findVariableByName(String str) {
|
732
|
logger.warn("findVariableByName implemented as super");
|
733
|
return super.findVariableByName(str);
|
734
|
}
|
735
|
|
736
|
/**
|
737
|
* Returns the variable with variable.uuid equal to uuid.
|
738
|
* Returns <code>null</code> if no such variable exists or
|
739
|
* if <code>uuid == null</code>
|
740
|
* @param uuid
|
741
|
* @return
|
742
|
*/
|
743
|
public Variable findVariableByUuid(UUID uuid) {
|
744
|
if (uuid == null){
|
745
|
return null;
|
746
|
}
|
747
|
//TODO improve performance by storing variables also in a
|
748
|
//hashmap
|
749
|
for (Variable var : base.getVariables()) {
|
750
|
if (uuid.equals(var.getUuid())) {
|
751
|
return var;
|
752
|
}
|
753
|
}
|
754
|
return null;
|
755
|
}
|
756
|
|
757
|
/* (non-Javadoc)
|
758
|
* @see fr_jussieu_snv_lis.base.IControlerBase#checkExistanceOneVariable(java.lang.String)
|
759
|
*/
|
760
|
@Override
|
761
|
public boolean checkExistanceOneVariable(String s) {
|
762
|
logger.warn("checkExistanceOneVariable implemented as super");
|
763
|
return super.checkExistanceOneVariable(s);
|
764
|
}
|
765
|
|
766
|
/* (non-Javadoc)
|
767
|
* @see fr_jussieu_snv_lis.base.IControlerBase#checkCommunModeName(fr_jussieu_snv_lis.base.Variable[])
|
768
|
*/
|
769
|
@Override
|
770
|
public boolean checkCommunModeName(Variable[] tab) {
|
771
|
logger.warn("checkCommunModeName Not yet implemented");
|
772
|
return false;
|
773
|
}
|
774
|
|
775
|
/* (non-Javadoc)
|
776
|
* @see fr_jussieu_snv_lis.base.IControlerBase#checkNumericalType(fr_jussieu_snv_lis.base.Variable[])
|
777
|
*/
|
778
|
@Override
|
779
|
public boolean checkNumericalType(Variable[] tab) {
|
780
|
logger.warn("checkNumericalType Not yet implemented");
|
781
|
return false;
|
782
|
}
|
783
|
|
784
|
/* (non-Javadoc)
|
785
|
* @see fr_jussieu_snv_lis.base.IControlerBase#checkStateNumber(fr_jussieu_snv_lis.base.Variable[])
|
786
|
*/
|
787
|
@Override
|
788
|
public boolean checkStateNumber(Variable[] tab) {
|
789
|
logger.warn("checkStateNumber Not yet implemented");
|
790
|
return false;
|
791
|
}
|
792
|
|
793
|
/* (non-Javadoc)
|
794
|
* @see fr_jussieu_snv_lis.base.IControlerBase#createNewVariable(java.lang.String)
|
795
|
*/
|
796
|
@Override
|
797
|
public Variable createNewVariable(String name) {
|
798
|
logger.warn("createNewVariable Not yet implemented");
|
799
|
return null;
|
800
|
}
|
801
|
|
802
|
/* (non-Javadoc)
|
803
|
* @see fr_jussieu_snv_lis.base.IControlerBase#createNewVariableNumOrEnum(java.lang.String, java.lang.String)
|
804
|
*/
|
805
|
@Override
|
806
|
public Variable createNewVariableNumOrEnum(String name, String type) {
|
807
|
logger.warn("createNewVariableNumOrEnum Not yet implemented");
|
808
|
return null;
|
809
|
}
|
810
|
|
811
|
/* (non-Javadoc)
|
812
|
* @see fr_jussieu_snv_lis.base.IControlerBase#addNewVariableAndItsModesToMatrix(fr_jussieu_snv_lis.base.Variable)
|
813
|
*/
|
814
|
@Override
|
815
|
public void addNewVariableAndItsModesToMatrix(Variable newVariable) {
|
816
|
logger.warn("addNewVariableAndItsModesToMatrix Not yet implemented");
|
817
|
}
|
818
|
|
819
|
/* (non-Javadoc)
|
820
|
* @see fr_jussieu_snv_lis.base.IControlerBase#addNewVariableNumAndItsModesToMatrix(fr_jussieu_snv_lis.base.Variable)
|
821
|
*/
|
822
|
@Override
|
823
|
public void addNewVariableNumAndItsModesToMatrix(Variable newVariable) {
|
824
|
logger.warn("addNewVariableNumAndItsModesToMatrix Not yet implemented");
|
825
|
}
|
826
|
|
827
|
/* (non-Javadoc)
|
828
|
* @see fr_jussieu_snv_lis.base.IControlerBase#deleteVariableFromMatrix(fr_jussieu_snv_lis.base.Variable)
|
829
|
*/
|
830
|
@Override
|
831
|
public void deleteVariableFromMatrix(Variable variable) {
|
832
|
logger.warn("deleteVariableFromMatrix Not yet implemented");
|
833
|
}
|
834
|
|
835
|
/* (non-Javadoc)
|
836
|
* @see fr_jussieu_snv_lis.base.IControlerBase#deleteVariable(fr_jussieu_snv_lis.base.Variable)
|
837
|
*/
|
838
|
@Override
|
839
|
public void deleteVariable(Variable va) {
|
840
|
logger.warn("deleteVariable Not yet implemented");
|
841
|
}
|
842
|
|
843
|
/* (non-Javadoc)
|
844
|
* @see fr_jussieu_snv_lis.base.IControlerBase#deleteVariableAndAllDaughters(fr_jussieu_snv_lis.base.Variable)
|
845
|
*/
|
846
|
@Override
|
847
|
public void deleteVariableAndAllDaughters(Variable v) {
|
848
|
logger.warn("deleteVariableAndAllDaughters Not yet implemented");
|
849
|
}
|
850
|
|
851
|
/* (non-Javadoc)
|
852
|
* @see fr_jussieu_snv_lis.base.IControlerBase#deleteVariablesAndAllDaughters(fr_jussieu_snv_lis.base.Variable[])
|
853
|
*/
|
854
|
@Override
|
855
|
public void deleteVariablesAndAllDaughters(Variable[] tab) {
|
856
|
logger.warn("deleteVariablesAndAllDaughters Not yet implemented");
|
857
|
}
|
858
|
|
859
|
/* (non-Javadoc)
|
860
|
* @see fr_jussieu_snv_lis.base.IControlerBase#deleteVariableWithoutDaughters(fr_jussieu_snv_lis.base.Variable)
|
861
|
*/
|
862
|
@Override
|
863
|
public void deleteVariableWithoutDaughters(Variable v) {
|
864
|
logger.warn("deleteVariableWithoutDaughters Not yet implemented");
|
865
|
|
866
|
}
|
867
|
|
868
|
/* (non-Javadoc)
|
869
|
* @see fr_jussieu_snv_lis.base.IControlerBase#deleteVariablesWithoutDaughters(fr_jussieu_snv_lis.base.Variable[])
|
870
|
*/
|
871
|
@Override
|
872
|
public void deleteVariablesWithoutDaughters(Variable[] tab) {
|
873
|
logger.warn("deleteVariablesWithoutDaughters Not yet implemented");
|
874
|
}
|
875
|
|
876
|
/* (non-Javadoc)
|
877
|
* @see fr_jussieu_snv_lis.base.IControlerBase#getVariableDescendant(java.util.List, fr_jussieu_snv_lis.base.Variable)
|
878
|
*/
|
879
|
@Override
|
880
|
public List<Variable> getVariableDescendant(List<Variable> listDescendant,
|
881
|
Variable v) {
|
882
|
logger.warn("getVariableDescendant Not yet implemented");
|
883
|
return null;
|
884
|
}
|
885
|
|
886
|
/* (non-Javadoc)
|
887
|
* @see fr_jussieu_snv_lis.base.IControlerBase#getVariableDaughters(fr_jussieu_snv_lis.base.Variable)
|
888
|
*/
|
889
|
@Override
|
890
|
public List<Variable> getVariableDaughters(Variable v) {
|
891
|
return super.getVariableDaughters(v);
|
892
|
}
|
893
|
|
894
|
/* (non-Javadoc)
|
895
|
* @see fr_jussieu_snv_lis.base.IControlerBase#getVariablesWithoutMother()
|
896
|
*/
|
897
|
@Override
|
898
|
public List<Variable> getVariablesWithoutMother() {
|
899
|
return super.getVariablesWithoutMother();
|
900
|
}
|
901
|
|
902
|
/* (non-Javadoc)
|
903
|
* @see fr_jussieu_snv_lis.base.IControlerBase#getVariablesWithoutMother(java.util.List)
|
904
|
*/
|
905
|
@Override
|
906
|
public List<Variable> getVariablesWithoutMother(List<Variable> variables) {
|
907
|
return super.getVariablesWithoutMother(variables);
|
908
|
}
|
909
|
|
910
|
/* (non-Javadoc)
|
911
|
* @see fr_jussieu_snv_lis.base.IControlerBase#getVariablesWithoutDaughter(java.util.List)
|
912
|
*/
|
913
|
@Override
|
914
|
public List<Variable> getVariablesWithoutDaughter(List<Variable> variables) {
|
915
|
logger.warn("getVariablesWithoutDaughter Not yet implemented");
|
916
|
return null;
|
917
|
}
|
918
|
|
919
|
/* (non-Javadoc)
|
920
|
* @see fr_jussieu_snv_lis.base.IControlerBase#getListVariable()
|
921
|
*/
|
922
|
@Override
|
923
|
public List<Variable> getListVariable() {
|
924
|
List<Variable> result = base.getVariables();
|
925
|
// List<FeatureNode> rootChildren = getFeatureTree().getRootChildren();
|
926
|
// List<Variable> result = cdmXperAdapter.adaptFeatureListToVariableList(-1, rootChildren);
|
927
|
return result; //base.getVariables();
|
928
|
}
|
929
|
|
930
|
/* (non-Javadoc)
|
931
|
* @see fr_jussieu_snv_lis.base.IControlerBase#getVariablesByGroup(java.util.List, fr_jussieu_snv_lis.base.Group)
|
932
|
*/
|
933
|
@Override
|
934
|
public List<Variable> getVariablesByGroup(List<Variable> variables, Group group) {
|
935
|
logger.warn("getVariablesByGroup Not yet implemented");
|
936
|
return null;
|
937
|
}
|
938
|
|
939
|
/* (non-Javadoc)
|
940
|
* @see fr_jussieu_snv_lis.base.IControlerBase#getVariablesWithoutGroup(java.util.List)
|
941
|
*/
|
942
|
@Override
|
943
|
public List<Variable> getVariablesWithoutGroup(List<Variable> variables) {
|
944
|
logger.warn("getVariablesWithoutGroup only implemented as super");
|
945
|
return super.getVariablesWithoutGroup(variables);
|
946
|
}
|
947
|
|
948
|
|
949
|
/* (non-Javadoc)
|
950
|
* @see fr_jussieu_snv_lis.base.IControlerBase#getCurrentVar()
|
951
|
*/
|
952
|
@Override
|
953
|
public Variable getCurrentVar() {
|
954
|
return super.getCurrentVar();
|
955
|
}
|
956
|
|
957
|
/* (non-Javadoc)
|
958
|
* @see fr_jussieu_snv_lis.base.IControlerBase#setCurrentVar(fr_jussieu_snv_lis.base.Variable)
|
959
|
*/
|
960
|
@Override
|
961
|
public void setCurrentVar(Variable var) {
|
962
|
super.setCurrentVar(var);
|
963
|
}
|
964
|
|
965
|
/* (non-Javadoc)
|
966
|
* @see fr_jussieu_snv_lis.base.IControlerBase#getCurrentInd()
|
967
|
*/
|
968
|
@Override
|
969
|
public Individual getCurrentInd() {
|
970
|
return super.getCurrentInd();
|
971
|
}
|
972
|
|
973
|
/* (non-Javadoc)
|
974
|
* @see fr_jussieu_snv_lis.base.IControlerBase#getCurrentIndArray()
|
975
|
*/
|
976
|
@Override
|
977
|
public Individual[] getCurrentIndArray() {
|
978
|
return super.getCurrentIndArray();
|
979
|
}
|
980
|
|
981
|
/* (non-Javadoc)
|
982
|
* @see fr_jussieu_snv_lis.base.IControlerBase#setCurrentInd(fr_jussieu_snv_lis.base.Individual)
|
983
|
*/
|
984
|
@Override
|
985
|
public void setCurrentInd(Individual ind) {
|
986
|
super.setCurrentInd(ind);
|
987
|
}
|
988
|
|
989
|
/* (non-Javadoc)
|
990
|
* @see fr_jussieu_snv_lis.base.IControlerBase#setCurrentIndArray(fr_jussieu_snv_lis.base.Individual[])
|
991
|
*/
|
992
|
@Override
|
993
|
public void setCurrentIndArray(Individual[] tab) {
|
994
|
super.setCurrentIndArray(tab);
|
995
|
}
|
996
|
|
997
|
/* (non-Javadoc)
|
998
|
* @see fr_jussieu_snv_lis.base.IControlerBase#setCurrentIndArray(java.lang.Object[])
|
999
|
*/
|
1000
|
@Override
|
1001
|
public void setCurrentIndArray(Object[] tab) {
|
1002
|
super.setCurrentIndArray(tab);
|
1003
|
}
|
1004
|
|
1005
|
|
1006
|
/* (non-Javadoc)
|
1007
|
* @see fr_jussieu_snv_lis.base.IControlerBase#getSortedIndividuals()
|
1008
|
*/
|
1009
|
@Override
|
1010
|
public List<Individual> getSortedIndividuals() {
|
1011
|
logger.warn("getSortedIndividuals Not yet implemented");
|
1012
|
return null;
|
1013
|
}
|
1014
|
|
1015
|
/* (non-Javadoc)
|
1016
|
* @see fr_jussieu_snv_lis.base.IControlerBase#getSortedGroups()
|
1017
|
*/
|
1018
|
@Override
|
1019
|
public List<Group> getSortedGroups() {
|
1020
|
logger.warn("getSortedGroups Not yet implemented");
|
1021
|
return null;
|
1022
|
}
|
1023
|
|
1024
|
/* (non-Javadoc)
|
1025
|
* @see fr_jussieu_snv_lis.base.IControlerBase#moveIndividualTo(int, fr_jussieu_snv_lis.base.Individual)
|
1026
|
*/
|
1027
|
@Override
|
1028
|
public void moveIndividualTo(int i, Individual ind) {
|
1029
|
logger.warn("moveIndividualTo Not yet implemented");
|
1030
|
|
1031
|
}
|
1032
|
|
1033
|
/* (non-Javadoc)
|
1034
|
* @see fr_jussieu_snv_lis.base.IControlerBase#moveVariableTo(int, fr_jussieu_snv_lis.base.Variable)
|
1035
|
*/
|
1036
|
@Override
|
1037
|
public void moveVariableTo(int i, Variable v) {
|
1038
|
logger.warn("moveVariableTo Not yet implemented");
|
1039
|
}
|
1040
|
|
1041
|
/* (non-Javadoc)
|
1042
|
* @see fr_jussieu_snv_lis.base.IControlerBase#moveVariablesTo(int, java.util.List)
|
1043
|
*/
|
1044
|
@Override
|
1045
|
public void moveVariablesTo(int i, List<Variable> a) {
|
1046
|
logger.warn("moveVariablesTo Not yet implemented");
|
1047
|
}
|
1048
|
|
1049
|
/* (non-Javadoc)
|
1050
|
* @see fr_jussieu_snv_lis.base.IControlerBase#moveGroupTo(int, fr_jussieu_snv_lis.base.Group)
|
1051
|
*/
|
1052
|
@Override
|
1053
|
public void moveGroupTo(int i, Group g) {
|
1054
|
logger.warn("moveGroupTo Not yet implemented");
|
1055
|
}
|
1056
|
|
1057
|
|
1058
|
}
|