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// $Id$
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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.globis;
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import java.util.HashSet;
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import java.util.Set;
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import java.util.UUID;
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import org.apache.commons.lang.StringUtils;
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import org.apache.log4j.Logger;
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import eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase;
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import eu.etaxonomy.cdm.io.common.mapping.UndefinedTransformerMethodException;
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import eu.etaxonomy.cdm.model.common.ExtensionType;
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import eu.etaxonomy.cdm.model.description.Feature;
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import eu.etaxonomy.cdm.model.location.NamedArea;
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import eu.etaxonomy.cdm.model.location.TdwgArea;
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import eu.etaxonomy.cdm.model.location.WaterbodyOrCountry;
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/**
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* @author a.mueller
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* @created 01.03.2010
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* @version 1.0
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*/
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public final class GlobisTransformer extends InputTransformerBase {
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private static final Logger logger = Logger.getLogger(GlobisTransformer.class);
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//marker types
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public static final UUID uuidCheckedMarkerType = UUID.fromString("f2a7926f-def1-49a6-b642-9b81e6b1e35c");
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public static final UUID uuidOldRecordMarkerType = UUID.fromString("8616edc5-00d4-40ca-aca4-d48ec32231e9");
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public static final UUID uuidNotAvailableMarkerType = UUID.fromString("6931e584-6fc2-44ab-9084-e6452f8cd5d1");
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//extension types
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public static final UUID uuidExtTypeNotAvailableReason = UUID.fromString("d7dd5632-8c65-4058-b804-d1291560ac4c");
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public NamedArea getNamedAreaByKey(String area) {
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Set<String> unhandledCountries = new HashSet<String>();
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if (StringUtils.isBlank(area)){return null;
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}else if (area.equals("Argentina")){return WaterbodyOrCountry.ARGENTINAARGENTINEREPUBLIC();
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}else if (area.equals("Bolivia")){return WaterbodyOrCountry.BOLIVIAREPUBLICOF();
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}else if (area.equals("Ghana")){return WaterbodyOrCountry.GHANAREPUBLICOF();
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}else if (area.equals("Angola")){return WaterbodyOrCountry.ANGOLAREPUBLICOF();
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}else if (area.equals("Tanzania")){return WaterbodyOrCountry.TANZANIAUNITEDREPUBLICOF();
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}else if (area.equals("China")){return WaterbodyOrCountry.CHINAPEOPLESREPUBLICOF();
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}else if (area.equals("Brunei")){return WaterbodyOrCountry.BRUNEIDARUSSALAM();
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}else if (area.equals("Australia")){return WaterbodyOrCountry.AUSTRALIACOMMONWEALTHOF();
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}else if (area.equals("Indonesia")){return WaterbodyOrCountry.INDONESIAREPUBLICOF();
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}else if (area.equals("Philippines")){return WaterbodyOrCountry.PHILIPPINESREPUBLICOFTHE();
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}else if (area.equals("Mongolia")){return WaterbodyOrCountry.MONGOLIAMONGOLIANPEOPLESREPUBLIC();
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}else if (area.equals("Russia")){return WaterbodyOrCountry.RUSSIANFEDERATION();
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}else if (area.equals("France")){return WaterbodyOrCountry.FRANCEFRENCHREPUBLIC();
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}else if (area.equals("Poland")){return WaterbodyOrCountry.POLANDPOLISHPEOPLESREPUBLIC();
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}else if (area.equals("Brazil")){return WaterbodyOrCountry.BRAZILFEDERATIVEREPUBLICOF();
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}else if (area.equals("Cuba")){return WaterbodyOrCountry.BRAZILFEDERATIVEREPUBLICOF();
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}else if (area.equals("Guatemala")){return WaterbodyOrCountry.GUATEMALAREPUBLICOF();
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}else if (area.equals("Colombia")){return WaterbodyOrCountry.COLOMBIAREPUBLICOF();
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}else if (area.equals("India")){return WaterbodyOrCountry.INDIAREPUBLICOF();
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}else if (area.equals("Mexico")){return WaterbodyOrCountry.MEXICOUNITEDMEXICANSTATES();
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}else if (area.equals("Peru")){return WaterbodyOrCountry.PERUREPUBLICOF();
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}else if (area.equals("Ecuador")){return WaterbodyOrCountry.ECUADORREPUBLICOF();
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}else if (area.equals("Venezuela")){return WaterbodyOrCountry.VENEZUELABOLIVARIANREPUBLICOF();
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}else if (area.equals("Guyana")){return WaterbodyOrCountry.GUYANAREPUBLICOF();
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}else if (area.equals("Panama")){return WaterbodyOrCountry.PANAMAREPUBLICOF();
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}else if (area.equals("Paraguay")){return WaterbodyOrCountry.PARAGUAYREPUBLICOF();
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}else if (area.equals("Suriname")){return WaterbodyOrCountry.SURINAMEREPUBLICOF();
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}else if (area.equals("Costa Rica")){return WaterbodyOrCountry.COSTARICAREPUBLICOF();
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}else if (area.equals("Ivory Coast")){return WaterbodyOrCountry.COTEDIVOIREIVORYCOASTREPUBLICOFTHE();
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}else if (area.equals("Benin")){return WaterbodyOrCountry.BENINPEOPLESREPUBLICOF();
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}else if (area.equalsIgnoreCase("Kenya")){return WaterbodyOrCountry.KENYAREPUBLICOF();
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}else if (area.equals("Uganda")){return WaterbodyOrCountry.UGANDAREPUBLICOF();
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}else if (area.equals("Zambia")){return WaterbodyOrCountry.ZAMBIAREPUBLICOF();
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}else if (area.equals("Rwanda")){return WaterbodyOrCountry.RWANDARWANDESEREPUBLIC();
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}else if (area.equals("South Africa")){return WaterbodyOrCountry.SOUTHAFRICAREPUBLICOF();
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}else if (area.equals("Botswana")){return WaterbodyOrCountry.BOTSWANAREPUBLICOF();
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}else if (area.equals("Burundi")){return WaterbodyOrCountry.BURUNDIREPUBLICOF();
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}else if (area.equals("Cameroon")){return WaterbodyOrCountry.CAMEROONUNITEDREPUBLICOF();
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}else if (area.equals("Congo")){return WaterbodyOrCountry.CONGOPEOPLESREPUBLICOF();
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}else if (area.equals("Zaire")){return WaterbodyOrCountry.CONGODEMOCRATICREPUBLICOF();
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}else if (area.equals("Equatorial Guinea")){return WaterbodyOrCountry.EQUATORIALGUINEAREPUBLICOF();
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}else if (area.equals("Gabon")){return WaterbodyOrCountry.GABONGABONESEREPUBLIC();
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}else if (area.equals("Liberia")){return WaterbodyOrCountry.LIBERIAREPUBLICOF();
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}else if (area.equals("Togo")){return WaterbodyOrCountry.TOGOTOGOLESEREPUBLIC();
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}else if (area.equals("Guinea")){return WaterbodyOrCountry.GUINEAREVOLUTIONARYPEOPLESREPCOF();
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}else if (area.equals("Guinea-Bissau")){return WaterbodyOrCountry.GUINEABISSAUREPUBLICOF();
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}else if (area.equals("Malawi")){return WaterbodyOrCountry.MALAWIREPUBLICOF();
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}else if (area.equals("Mozambique")){return WaterbodyOrCountry.MOZAMBIQUEPEOPLESREPUBLICOF();
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}else if (area.equals("Nigeria")){return WaterbodyOrCountry.NIGERIAFEDERALREPUBLICOF();
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}else if (area.equals("Senegal")){return WaterbodyOrCountry.SENEGALREPUBLICOF();
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}else if (area.equals("Sierra Leone")){return WaterbodyOrCountry.SIERRALEONEREPUBLICOF();
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}else if (area.equals("Sudan")){return WaterbodyOrCountry.SUDANDEMOCRATICREPUBLICOFTHE();
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}else if (area.equals("Madagascar")){return WaterbodyOrCountry.MADAGASCARREPUBLICOF();
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}else if (area.equals("Comoros")){return WaterbodyOrCountry.COMOROSUNIONOFTHE();
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}else if (area.equals("Vietnam")){return WaterbodyOrCountry.VIETNAMSOCIALISTREPUBLICOF();
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}else if (area.equals("Thailand")){return WaterbodyOrCountry.THAILANDKINGDOMOF();
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}else if (area.equals("Bhutan")){return WaterbodyOrCountry.BHUTANKINGDOMOF();
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}else if (area.equals("Laos")){return WaterbodyOrCountry.LAOPEOPLESDEMOCRATICREPUBLIC();
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}else if (area.equals("Myanmar (Burma)")){return WaterbodyOrCountry.MYANMAR();
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}else if (area.equals("Nepal")){return WaterbodyOrCountry.NEPALKINGDOMOF();
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}else if (area.equals("Pakistan")){return WaterbodyOrCountry.PAKISTANISLAMICREPUBLICOF();
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}else if (area.equals("Singapore")){return WaterbodyOrCountry.SINGAPOREREPUBLICOF();
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}else if (area.equals("Honduras")){return WaterbodyOrCountry.HONDURASREPUBLICOF();
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}else if (area.equals("Nicaragua")){return WaterbodyOrCountry.NICARAGUAREPUBLICOF();
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}else if (area.equals("Trinidad and Tobago")){return WaterbodyOrCountry.TRINIDADANDTOBAGOREPUBLICOF();
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}else if (area.equals("United States")){return WaterbodyOrCountry.UNITEDSTATESOFAMERICA();
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}else if (area.equals("Uruguay")){return WaterbodyOrCountry.URUGUAYEASTERNREPUBLICOF();
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}else if (area.equals("Haiti")){return WaterbodyOrCountry.HAITIREPUBLICOF();
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}else if (area.equals("North Korea")){return WaterbodyOrCountry.KOREADEMOCRATICPEOPLESREPUBLICOF();
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}else if (area.equals("South Korea")){return WaterbodyOrCountry.KOREAREPUBLICOF();
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}else if (area.equals("Taiwan")){return WaterbodyOrCountry.TAIWANPROVINCEOFCHINA();
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}else if (area.equals("Somalia")){return WaterbodyOrCountry.SOMALIASOMALIREPUBLIC();
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}else if (area.equals("Albania")){return WaterbodyOrCountry.ALBANIAPEOPLESSOCIALISTREPUBLICOF();
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}else if (area.equals("Algeria")){return WaterbodyOrCountry.ALGERIAPEOPLESDEMOCRATICREPUBLICOF();
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}else if (area.equals("Andorra")){return WaterbodyOrCountry.ANDORRAPRINCIPALITYOF();
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}else if (area.equals("Austria")){return WaterbodyOrCountry.AUSTRIAREPUBLICOF();
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}else if (area.equals("Azerbaijan")){return WaterbodyOrCountry.AZERBAIJANREPUBLICOF();
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}else if (area.equals("Bulgaria")){return WaterbodyOrCountry.BULGARIAPEOPLESREPUBLICOF();
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}else if (area.equals("Croatia")){return WaterbodyOrCountry.HRVATSKA();
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}else if (area.equals("Greece")){return WaterbodyOrCountry.GREECEHELLENICREPUBLIC();
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}else if (area.equals("Hungary")){return WaterbodyOrCountry.HUNGARYHUNGARIANPEOPLESREPUBLIC();
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}else if (area.equals("Iran")){return WaterbodyOrCountry.IRANISLAMICREPUBLICOF();
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}else if (area.equals("Iraq")){return WaterbodyOrCountry.IRAQREPUBLICOF();
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}else if (area.equals("Israel")){return WaterbodyOrCountry.ISRAELSTATEOF();
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}else if (area.equals("Italy")){return WaterbodyOrCountry.ITALYITALIANREPUBLIC();
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}else if (area.equals("Kazakhstan")){return WaterbodyOrCountry.KAZAKHSTANREPUBLICOF();
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}else if (area.equals("Kyrgyzstan")){return WaterbodyOrCountry.KYRGYZREPUBLIC();
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}else if (area.equals("Lebanon")){return WaterbodyOrCountry.LEBANONLEBANESEREPUBLIC();
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}else if (area.equals("Luxembourg")){return WaterbodyOrCountry.LUXEMBOURGGRANDDUCHYOF();
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}else if (area.equals("Macedonia")){return WaterbodyOrCountry.MACEDONIATHEFORMERYUGOSLAVREPUBLICOF();
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}else if (area.equals("Moldova")){return WaterbodyOrCountry.MOLDOVAREPUBLICOF();
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}else if (area.equals("Morocco")){return WaterbodyOrCountry.MOROCCOKINGDOMOF();
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}else if (area.equals("Romania")){return WaterbodyOrCountry.ROMANIASOCIALISTREPUBLICOF();
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}else if (area.equals("Serbia")){return WaterbodyOrCountry.SERBIAANDMONTENEGRO();
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}else if (area.equals("Slovakia")){return WaterbodyOrCountry.SLOVAKIA();
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}else if (area.equals("Spain")){return WaterbodyOrCountry.SPAINSPANISHSTATE();
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}else if (area.equals("Switzerland")){return WaterbodyOrCountry.SWITZERLANDSWISSCONFEDERATION();
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}else if (area.equals("Syria")){return WaterbodyOrCountry.SYRIANARABREPUBLIC();
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}else if (area.equals("Turkey")){return WaterbodyOrCountry.TURKEYREPUBLICOF();
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}else if (area.equals("Cambodia")){return WaterbodyOrCountry.CAMBODIAKINGDOMOF();
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}else if (area.equals("Bangladesh")){return WaterbodyOrCountry.BANGLADESHPEOPLESREPUBLICOF();
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}else if (area.equals("Sri Lanka")){return WaterbodyOrCountry.SRILANKADEMOCRATICSOCIALISTREPUBLICOF();
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}else if (area.equals("Bahamas")){return WaterbodyOrCountry.BAHAMASCOMMONWEALTHOFTHE();
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}else if (area.equals("Western Samoa")){return WaterbodyOrCountry.SAMOAINDEPENDENTSTATEOF();
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}else if (area.equals("Finland")){return WaterbodyOrCountry.FINLANDREPUBLICOF();
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}else if (area.equals("Norway")){return WaterbodyOrCountry.NORWAYKINGDOMOF();
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}else if (area.equals("El Salvador")){return WaterbodyOrCountry.ELSALVADORREPUBLICOF();
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}else if (area.equals("Cyprus")){return WaterbodyOrCountry.CYPRUSREPUBLICOF();
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}else if (area.equals("Sweden")){return WaterbodyOrCountry.SWEDENKINGDOMOF();
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}else if (area.equals("Denmark")){return WaterbodyOrCountry.DENMARKKINGDOMOF();
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}else if (area.equals("Trinidad & Tobago")){return WaterbodyOrCountry.TRINIDADANDTOBAGOREPUBLICOF();
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}else if (area.equals("Chile")){return WaterbodyOrCountry.CHILEREPUBLICOF();
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}else if (area.equals("Jordan")){return WaterbodyOrCountry.JORDANHASHEMITEKINGDOMOF();
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}else if (area.equals("Montenegro")){
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logger.warn("Montenegro is currently mapped to 'Serbia & Montenegro'");
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return WaterbodyOrCountry.SERBIAANDMONTENEGRO();
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}else if (area.equals("Portugal")){return WaterbodyOrCountry.PORTUGALPORTUGUESEREPUBLIC();
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}else if (area.equals("Tunisia")){return WaterbodyOrCountry.TUNISIAREPUBLICOF();
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}else if (area.equals("Seychelles")){return WaterbodyOrCountry.SEYCHELLESREPUBLICOF();
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}else if (area.equals("Fiji")){return WaterbodyOrCountry.FIJIREPUBLICOFTHEFIJIISLANDS();
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}else if (area.equals("Belgium")){return WaterbodyOrCountry.BELGIUMKINGDOMOF();
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}else if (area.equals("Virgin Islands")){return WaterbodyOrCountry.USVIRGINISLANDS();
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}else if (area.equals("Gambia")){return WaterbodyOrCountry.GAMBIAREPUBLICOFTHE();
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}else if (area.equals("Dominica")){return WaterbodyOrCountry.DOMINICACOMMONWEALTHOF();
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}else if (area.equals("Liechtenstein")){return WaterbodyOrCountry.LIECHTENSTEINPRINCIPALITYOF();
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}else if (area.matches("B(y)?elarus")){return WaterbodyOrCountry.BELARUS();
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}else if (area.matches("United States: Alaska")){ return TdwgArea.getAreaByTdwgAbbreviation("ASK");
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}else{
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if (unhandledCountries.contains(area)){
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logger.warn("Unhandled country '" + area + "' replaced by null" );
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return null;
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}
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return null;
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}
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getLanguageUuid(java.lang.String)
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*/
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@Override
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public UUID getLanguageUuid(String key)
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throws UndefinedTransformerMethodException {
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return super.getLanguageUuid(key);
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getExtensionTypeByKey(java.lang.String)
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*/
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@Override
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public ExtensionType getExtensionTypeByKey(String key) throws UndefinedTransformerMethodException {
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if (key == null){return null;
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}
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return null;
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getExtensionTypeUuid(java.lang.String)
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*/
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@Override
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public UUID getExtensionTypeUuid(String key)
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throws UndefinedTransformerMethodException {
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if (key == null){return null;
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}else if (key.equalsIgnoreCase("not available reason")){return uuidExtTypeNotAvailableReason;
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// }else if (key.equalsIgnoreCase("recent + fossil")){return uuidRecentAndFossil;
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// }else if (key.equalsIgnoreCase("fossil only")){return uuidFossilOnly;
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}
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return null;
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getExtensionTypeUuid(java.lang.String)
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*/
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@Override
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public UUID getMarkerTypeUuid(String key)
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throws UndefinedTransformerMethodException {
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if (key == null){return null;
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}else if (key.equalsIgnoreCase("old record")){return uuidOldRecordMarkerType;
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}else if (key.equalsIgnoreCase("checked")){return uuidCheckedMarkerType;
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}else if (key.equalsIgnoreCase("not available")){return uuidNotAvailableMarkerType;
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}
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return null;
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getFeatureByKey(java.lang.String)
|
|
260
|
*/
|
|
261
|
@Override
|
|
262
|
public Feature getFeatureByKey(String key) throws UndefinedTransformerMethodException {
|
|
263
|
if (StringUtils.isBlank(key)){return null;
|
|
264
|
}else if (key.equalsIgnoreCase("Distribution")){return Feature.DISTRIBUTION();
|
|
265
|
}else if (key.equalsIgnoreCase("Ecology")){return Feature.ECOLOGY();
|
|
266
|
}else if (key.equalsIgnoreCase("Diagnosis")){return Feature.DIAGNOSIS();
|
|
267
|
}else if (key.equalsIgnoreCase("Biology")){return Feature.BIOLOGY_ECOLOGY();
|
|
268
|
}else if (key.equalsIgnoreCase("Host")){return Feature.HOSTPLANT();
|
|
269
|
}else{
|
|
270
|
return null;
|
|
271
|
}
|
|
272
|
}
|
|
273
|
|
|
274
|
|
|
275
|
|
|
276
|
|
|
277
|
}
|