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/**
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* Copyright (C) 2019 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.pesi.fauEu2Cdm;
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import java.util.HashSet;
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import java.util.Set;
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import org.apache.log4j.Logger;
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import org.springframework.stereotype.Component;
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import org.springframework.transaction.TransactionStatus;
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import eu.etaxonomy.cdm.common.monitor.IProgressMonitor;
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import eu.etaxonomy.cdm.io.common.ITaxonNodeOutStreamPartitioner;
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import eu.etaxonomy.cdm.io.common.TaxonNodeOutStreamPartitioner;
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import eu.etaxonomy.cdm.io.common.TaxonNodeOutStreamPartitionerConcurrent;
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import eu.etaxonomy.cdm.model.description.TaxonDescription;
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import eu.etaxonomy.cdm.model.taxon.TaxonNode;
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/**
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* @author a.mueller
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* @since 17.08.2019
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*/
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@Component
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public class FauEu2CdmDescriptionImport
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extends FauEu2CdmImportBase {
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private static final long serialVersionUID = -2111102574346601573L;
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private static final Logger logger = Logger.getLogger(FauEu2CdmDescriptionImport.class);
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@Override
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protected void doInvoke(FauEu2CdmImportState state) {
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setState(state);
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IProgressMonitor monitor = state.getConfig().getProgressMonitor();
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FauEu2CdmImportConfigurator config = state.getConfig();
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ITaxonNodeOutStreamPartitioner partitioner = getPartitioner(state, monitor, config);
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monitor.subTask("Start partitioning");
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doData(state, partitioner);
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}
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private void doData(FauEu2CdmImportState state, ITaxonNodeOutStreamPartitioner partitioner){
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TaxonNode node = partitioner.next();
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int partitionSize = 100;
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int count = 0;
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TransactionStatus tx = startTransaction();
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while (node != null) {
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doSingleNode(state, node);
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count++;
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if (count>=partitionSize){
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clearCache();
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try {
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commitTransaction(tx);
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} catch (Exception e) {
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logger.warn("Exception during commit node " + node.treeIndex());
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e.printStackTrace();
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}
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tx = startTransaction();
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count=0;
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}
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node = partitioner.next();
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}
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commitTransaction(tx);
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partitioner.close();
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}
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private void doSingleNode(FauEu2CdmImportState state, TaxonNode node) {
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Set<TaxonDescription> result = new HashSet<>();
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logger.info(node.treeIndex());
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try {
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for (TaxonDescription desc : node.getTaxon().getDescriptions()){
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result.add(detache(desc));
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}
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} catch (Exception e) {
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logger.warn("Exception during detache node " + node.treeIndex());
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e.printStackTrace();
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}
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try {
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if (!result.isEmpty()){
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getDescriptionService().saveOrUpdate((Set)result);
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getCommonService().saveOrUpdate(toSave);
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toSave.clear();
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}
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} catch (Exception e) {
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logger.warn("Exception during save node " + node.treeIndex());
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e.printStackTrace();
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}
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}
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private ITaxonNodeOutStreamPartitioner getPartitioner(FauEu2CdmImportState state, IProgressMonitor monitor,
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FauEu2CdmImportConfigurator config) {
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ITaxonNodeOutStreamPartitioner partitioner = config.getPartitioner();
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if (partitioner == null){
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if(!config.isConcurrent()){
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partitioner = TaxonNodeOutStreamPartitioner.NewInstance(sourceRepo(state), state,
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state.getConfig().getTaxonNodeFilter(), 100,
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monitor, 1, TaxonNodeOutStreamPartitioner.fullPropertyPaths);
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((TaxonNodeOutStreamPartitioner)partitioner).setLastCommitManually(true);
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}else{
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partitioner = TaxonNodeOutStreamPartitionerConcurrent
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.NewInstance(state.getConfig().getSource(), state.getConfig().getTaxonNodeFilter(),
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1000, monitor, 1, TaxonNodeOutStreamPartitioner.fullPropertyPaths);
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}
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}
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return partitioner;
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}
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@Override
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protected boolean doDescriptions(FauEu2CdmImportState state) {
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return true;
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}
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@Override
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protected boolean doCheck(FauEu2CdmImportState state) {
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return false;
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}
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@Override
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protected boolean isIgnore(FauEu2CdmImportState state) {
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return !state.getConfig().isDoDescriptions();
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}
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}
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